vOTU vOTU-020161

vOTU: vOTU-020161

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-020161
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00041 → vSUBFAM-00274 → vGENUS-04587 → vOTU-020161
Host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Intestinibacter
Host range breadth	Genus
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0387359
Biosample ID	N/A
Genome length (bp)	28,872 bps
CheckV completeness	65.98% (Medium-quality)
CDS count	29
CDS density	93.49%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Intestinibacter	Total connections	59	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae	Total connections	4	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 65.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0387359_1	UniRef90_UPI000DD04C40	66.6	0.000000000000655	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0387359_1	1280689.AUJC01000024_gene150	66.6	0.00000000000011	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0387359_1	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
KOfam	UHGV-0387359_2	K06400	348.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0387359_2	phrog_95	398.7	0	integrase	integration and excision
UniRef90	UHGV-0387359_2	UniRef90_UPI00189BD721	585.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0387359_2	1151292.QEW_4366	541.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0387359_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0387359_2	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0387359_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0387359_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0387359_2	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0387359_3	phrog_38798	49.5	0.000000000000048	N/A	unknown function
UniRef90	UHGV-0387359_3	UniRef90_T3D4A8	52.0	0.000000109	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB domain protein	N/A
eggNOG-mapper	UHGV-0387359_3	1292035.H476_0669	54.7	0.0000000527	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	N/A
COG	UHGV-0387359_3	COG0621	N/A	N/A	tRNA A37 methylthiotransferase MiaB	N/A
KOfam	UHGV-0387359_4	K03466	118.1	6.5e-35	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-0387359_4	phrog_1358	147.0	7.42688e-44	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0387359_4	UniRef90_A0A267MQD1	132.0	3.06e-31	FtsK domain-containing protein	N/A
eggNOG-mapper	UHGV-0387359_4	1463900.JOIX01000030_gene4772	99.4	8.65e-20	N/A	N/A
PADLOC	UHGV-0387359_4	SspH_00004	55.6	2.3e-16	SspH	SSP
Pfam	UHGV-0387359_4	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-0387359_4	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
PHROG	UHGV-0387359_5	phrog_9996	66.8	4e-19	N/A	unknown function
UniRef90	UHGV-0387359_5	UniRef90_UPI0011071500	348.0	0	replication-relaxation family protein	N/A
Pfam	UHGV-0387359_5	PF13814	N/A	N/A	Replication-relaxation	Replic_Relax
structural_annotation	UHGV-0387359_5	PF13814,MF_01819,NF041423,COG1733	N/A	N/A	N/A	N/A
KOfam	UHGV-0387359_6	K01448	132.8	2.8e-39	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0387359_6	phrog_435	122.1	5.6e-36	endolysin	lysis
UniRef90	UHGV-0387359_6	UniRef90_UPI0018A97EC2	491.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0387359_6	445973.CLOBAR_01731	429.0	0	Ami_3	N/A
Pfam	UHGV-0387359_6	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0387359_6	PF19087	N/A	N/A	N/A	DUF5776
COG	UHGV-0387359_6	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0387359_6	PF01520,PF19087,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0387359_7	phrog_1129	83.2	1.7e-24	holin	lysis
UniRef90	UHGV-0387359_7	UniRef90_A0A0B3VH17	119.0	1.52e-33	Holin	N/A
eggNOG-mapper	UHGV-0387359_7	702450.CUW_2556	106.0	4.21e-29	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0387359_7	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0387359_7	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0387359_8	phrog_1863	71.3	5.7e-21	N/A	unknown function
UniRef90	UHGV-0387359_8	UniRef90_A0A2K9NYV1	57.4	0.00000000384	Holin	N/A
eggNOG-mapper	UHGV-0387359_8	428125.CLOLEP_01781	59.7	0.0000000000701	N/A	N/A
UniRef90	UHGV-0387359_9	UniRef90_A0A542AKB6	90.1	1.09e-21	Anaerobic ribonucleoside-triphosphate reductase-like protein	N/A
eggNOG-mapper	UHGV-0387359_9	1105031.HMPREF1141_0490	85.9	8.6e-21	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-0387359_9	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-0387359_9	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
KOfam	UHGV-0387359_10	K07485	311.1	0	K07485; transposase	N/A
PHROG	UHGV-0387359_10	phrog_5749	512.9	0	transposase	integration and excision
UniRef90	UHGV-0387359_10	UniRef90_A0A0A8WEF4	527.0	0	Transposase	N/A
eggNOG-mapper	UHGV-0387359_10	1582152.A0A0A8WEF4_9CAUD	527.0	0	Helix-turn-helix domain of transposase family ISL3	N/A
Pfam	UHGV-0387359_10	PF14690	N/A	N/A	zinc-finger of transposase IS204/IS1001/IS1096/IS1165	zf-ISL3
Pfam	UHGV-0387359_10	PF13542	N/A	N/A	Helix-turn-helix domain of transposase family ISL3	HTH_Tnp_ISL3
Pfam	UHGV-0387359_10	PF01610	N/A	N/A	Transposase	DDE_Tnp_ISL3
NCBIFam	UHGV-0387359_10	NF033550.5	N/A	N/A	ISL3 family transposase	N/A
structural_annotation	UHGV-0387359_10	PF01610,PF20020,NF033550,COG3464	N/A	N/A	N/A	N/A
PHROG	UHGV-0387359_12	phrog_1048	166.3	0	N/A	unknown function
UniRef90	UHGV-0387359_12	UniRef90_A0A374AMV7	290.0	0	N/A	N/A
eggNOG-mapper	UHGV-0387359_12	457412.RSAG_01107	257.0	0	N/A	N/A
Pfam	UHGV-0387359_12	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0387359_12	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0387359_12	PF11195	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0387359_14	1444310.JANV01000096_gene3278	84.0	2.86e-20	N/A	N/A
PHROG	UHGV-0387359_15	phrog_16573	43.1	0.0000000000065	N/A	unknown function
eggNOG-mapper	UHGV-0387359_15	411462.DORLON_00771	61.6	0.000000918	N/A	N/A
Pfam	UHGV-0387359_15	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
KOfam	UHGV-0387359_16	K11062	90.5	1.8e-26	entD; probable enterotoxin D	N/A
PHROG	UHGV-0387359_16	phrog_7043	390.4	0	tail protein	tail
UniRef90	UHGV-0387359_16	UniRef90_UPI0018AA7BAA	2236.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0387359_16	1292035.H476_1004	447.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0387359_16	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0387359_16	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
Pfam	UHGV-0387359_16	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
NCBIFam	UHGV-0387359_16	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0387359_16	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0387359_16	PF14594,PF08239,PF19081,PF13229,TIGR01665,NF040678,COG4926,COG4991,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0387359_17	phrog_33	69.0	1.2e-19	distal tail protein Dit	tail
UniRef90	UHGV-0387359_17	UniRef90_A0A1C5VG03	204.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0387359_17	573061.Clocel_3532	150.0	3.03942e-42	tail component	N/A
COG	UHGV-0387359_17	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0387359_17	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0387359_18	K06240	58.0	1.7e-17	LAMA3_5; laminin, alpha 3/5	N/A
PHROG	UHGV-0387359_18	phrog_1272	346.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0387359_18	UniRef90_UPI0011074901	1142.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0387359_18	1536774.H70357_10670	235.0	0	minor tail protein	N/A
Pfam	UHGV-0387359_18	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0387359_18	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0387359_18	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0387359_19	1121866.AUGK01000006_gene886	64.3	0.0000000000125	N/A	N/A
UniRef90	UHGV-0387359_20	UniRef90_A0A316S919	230.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0387359_20	1384484.AEQU_1175	162.0	0	N/A	N/A
structural_annotation	UHGV-0387359_20	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0387359_21	phrog_5509	117.5	6.3e-35	neck protein	connector
eggNOG-mapper	UHGV-0387359_21	1123315.AUIP01000014_gene1956	70.9	0.0000000000000827	N/A	N/A
structural_annotation	UHGV-0387359_21	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387359_22	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0387359_23	phrog_5635	60.5	3.2e-17	head-tail adaptor	connector
UniRef90	UHGV-0387359_23	UniRef90_UPI0011070497	206.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0387359_23	1220589.CD32_01710	62.8	0.000000000049	N/A	N/A
NCBIFam	UHGV-0387359_23	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0387359_23	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0387359_24	phrog_749	59.1	6.7e-17	N/A	unknown function
UniRef90	UHGV-0387359_24	UniRef90_A0A1I3QJG6	120.0	1.17e-33	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0387359_24	1121866.AUGK01000006_gene881	65.1	0.00000000000241	N/A	N/A
PHROG	UHGV-0387359_25	phrog_10	91.3	1.1e-26	major head protein	head and packaging
UniRef90	UHGV-0387359_25	UniRef90_UPI001107332E	789.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0387359_25	349161.Dred_2604	313.0	0	Phage capsid family	N/A
Pfam	UHGV-0387359_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0387359_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0387359_25	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0387359_25	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0387359_26	K01358	149.5	2.94273e-44	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0387359_26	phrog_94	228.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0387359_26	UniRef90_UPI00110724D9	400.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0387359_26	1232452.BAIB02000007_gene1626	238.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0387359_26	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0387359_26	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0387359_26	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0387359_27	phrog_12	124.9	5.2e-37	portal protein	head and packaging
UniRef90	UHGV-0387359_27	UniRef90_UPI00148519DF	600.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0387359_27	349161.Dred_2606	287.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0387359_27	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0387359_27	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0387359_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0387359_27	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0387359_28	phrog_9	321.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0387359_28	UniRef90_UPI0011061D03	1075.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0387359_28	1211817.CCAT010000053_gene2129	649.0	0	Phage Terminase	N/A
Pfam	UHGV-0387359_28	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0387359_28	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0387359_28	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0387359_28	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0387359_29	phrog_5110	121.3	3.2e-36	terminase small subunit	head and packaging
UniRef90	UHGV-0387359_29	UniRef90_UPI001E64C17F	131.0	1.88e-37	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0387359_29	349161.Dred_2608	137.0	8.41003e-41	N/A	N/A
Pfam	UHGV-0387359_29	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0387359_29	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0387359	Yes	28,872	30	66	1
UHGV-0200676	No	27,023	30	62	1
UHGV-0317759	No	27,023	30	62	1
UHGV-0295720	No	19,891	31	45	1
UHGV-1709084	No	19,891	31	45	1