vOTU vOTU-020171

vOTU: vOTU-020171

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-020171
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00027 → vSUBFAM-00430 → vGENUS-02630 → vOTU-020171
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Coprobacillaceae → Catenibacterium
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0142301
Biosample ID	SAMN05414978
Genome length (bp)	31,956 bps
CheckV completeness	64.37% (Medium-quality)
CDS count	41
CDS density	92.35%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Coprobacillaceae → Catenibacterium	Total connections	168	Host agreement	98.81
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 64.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0142301_1	phrog_159	42.5	0.0000000000073	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0142301_1	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0142301_3	phrog_1706	54.3	0.0000000000000021	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0142301_3	1499968.TCA2_4616	56.2	0.00000275	DNA catabolic process, exonucleolytic	N/A
COG	UHGV-0142301_3	COG1468	N/A	N/A	CRISPR/Cas system-associated exonuclease Cas4, RecB family	N/A
structural_annotation	UHGV-0142301_3	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0142301_5	K03553	176.1	0	recA; recombination protein RecA	N/A
PHROG	UHGV-0142301_5	phrog_97	167.0	0	UvsX-like recombinase	other
UniRef90	UHGV-0142301_5	UniRef90_A0A843GSV7	385.0	0	RECA_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0142301_5	469616.FMAG_01147	140.0	7.35e-36	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0142301_5	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-0142301_5	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0142301_5	PF00154,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0142301_7	K02337	734.8	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-0142301_7	phrog_405	696.3	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142301_7	UniRef90_A0A843GPT9	1097.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0142301_7	1158345.JNLL01000001_gene729	409.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-0142301_7	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-0142301_7	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-0142301_7	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-0142301_7	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
NCBIFam	UHGV-0142301_7	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-0142301_7	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-0142301_7	PF07733,PF02811,PF17657,PF14579,MF_01902,TIGR00594,COG0587	N/A	N/A	N/A	N/A
PHROG	UHGV-0142301_8	phrog_236	90.4	3.9e-26	nucleotide kinase	other
UniRef90	UHGV-0142301_8	UniRef90_UPI001D04CE99	123.0	2e-35	N/A	N/A
eggNOG-mapper	UHGV-0142301_8	1123263.AUKY01000015_gene1590	84.0	1.75e-20	N/A	N/A
Pfam	UHGV-0142301_8	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0142301_8	PF11753	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0142301_10	PF08804	N/A	N/A	N/A	N/A
KOfam	UHGV-0142301_11	K02316	143.6	1.69978e-42	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0142301_11	phrog_47	136.2	3e-40	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142301_11	UniRef90_A0A843GN62	348.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0142301_11	573061.Clocel_1457	89.0	1.36e-16	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
PADLOC	UHGV-0142301_11	drt-UG29	45.0	4.4e-23	DRT	DRT
Pfam	UHGV-0142301_11	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0142301_11	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-0142301_11	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0142301_11	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
PHROG	UHGV-0142301_14	phrog_937	64.8	1.4e-18	hemolysin	other
eggNOG-mapper	UHGV-0142301_14	742740.HMPREF9474_03172	115.0	4.75e-32	N/A	N/A
PHROG	UHGV-0142301_15	phrog_1220	220.5	0	head protein	head and packaging
UniRef90	UHGV-0142301_15	UniRef90_A0A6B3YJZ4	150.0	2.18e-39	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0142301_15	1033737.CAEV01000028_gene283	157.0	5.15678e-43	N/A	N/A
structural_annotation	UHGV-0142301_15	PF08931,PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0142301_16	phrog_538	249.5	0	minor tail protein	tail
UniRef90	UHGV-0142301_16	UniRef90_UPI000717641B	188.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0142301_16	768704.Desmer_4453	167.0	2.8026e-45	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0142301_16	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0142301_16	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0142301_17	phrog_36410	108.5	5e-32	N/A	unknown function
UniRef90	UHGV-0142301_17	UniRef90_A0A7X9C3E1	345.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0142301_17	536232.CLM_2045	138.0	3.54e-36	Phage tail protein	N/A
Pfam	UHGV-0142301_17	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0142301_17	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0142301_17	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0142301_18	phrog_1533	489.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0142301_18	UniRef90_A0A351TJS6	364.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0142301_18	1410670.JHXF01000015_gene2302	362.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0142301_18	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0142301_18	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0142301_18	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0142301_18	PF10145,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0142301_19	phrog_6280	112.4	1.4e-33	N/A	unknown function
UniRef90	UHGV-0142301_19	UniRef90_A0A8J6PH67	111.0	4.68e-28	Esterase	N/A
eggNOG-mapper	UHGV-0142301_19	445335.CBN_3078	100.0	2.3e-24	N/A	N/A
PHROG	UHGV-0142301_20	phrog_6686	140.2	1.19993e-41	tail tube protein	tail
UniRef90	UHGV-0142301_20	UniRef90_A0A1C6KI12	163.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0142301_20	871584.D9ZNE2_9CAUD	116.0	5.73e-30	N/A	N/A
structural_annotation	UHGV-0142301_20	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0142301_21	phrog_7585	65.9	6.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0142301_21	1196322.A370_04060	63.2	0.0000000000783	N/A	N/A
eggNOG-mapper	UHGV-0142301_22	632292.Calhy_0769	78.2	3.81e-17	Phage virion morphogenesis	N/A
COG	UHGV-0142301_22	COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0142301_22	PF04883,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0142301_23	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0142301_24	phrog_4020	62.1	8.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0142301_24	1121342.AUCO01000012_gene1692	51.6	0.000000186	N/A	N/A
PHROG	UHGV-0142301_26	phrog_29	266.0	0	major head protein	head and packaging
UniRef90	UHGV-0142301_26	UniRef90_UPI00082C04A5	382.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0142301_26	1158612.I580_01912	327.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0142301_26	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0142301_26	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0142301_27	1158612.I580_01911	52.0	0.000000925	N/A	N/A
structural_annotation	UHGV-0142301_27	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0142301_28	phrog_2303	70.8	1.4e-20	head scaffolding protein	head and packaging
structural_annotation	UHGV-0142301_28	PF10788,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0142301_29	phrog_1315	41.9	0.000000000013	N/A	unknown function
structural_annotation	UHGV-0142301_30	PF06133	N/A	N/A	N/A	N/A
KOfam	UHGV-0142301_32	K11044	51.8	0.0000000000000011	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-0142301_32	phrog_3895	47.0	0.00000000000041	ADP-ribosyltransferase exoenzyme toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0142301_32	UniRef90_A0A2A8H7K5	57.0	0.0000008	ADPrib_exo_Tox domain-containing protein	N/A
eggNOG-mapper	UHGV-0142301_32	711393.AYRX01000022_gene753	57.0	0.000000241	nuclear chromosome segregation	N/A
Pfam	UHGV-0142301_32	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0142301_32	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
PHROG	UHGV-0142301_33	phrog_1657	160.9	0	head morphogenesis	head and packaging
UniRef90	UHGV-0142301_33	UniRef90_A0A349YJR5	558.0	0	ADPrib_exo_Tox domain-containing protein	N/A
eggNOG-mapper	UHGV-0142301_33	1567015.A0A0A7RUI1_9VIRU	144.0	1.18e-34	Phage Mu protein F like protein	N/A
PHROG	UHGV-0142301_34	phrog_64	111.6	5e-33	portal protein	head and packaging
UniRef90	UHGV-0142301_34	UniRef90_A0A843GSM3	405.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0142301_34	1121342.AUCO01000012_gene1700	149.0	1.18e-36	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0142301_34	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0142301_34	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0142301_35	K01448	131.1	1.2e-38	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0142301_35	phrog_435	193.2	0	endolysin	lysis
UniRef90	UHGV-0142301_35	UniRef90_UPI001EE924D3	261.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0142301_35	411461.DORFOR_01187	248.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0142301_35	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0142301_35	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0142301_35	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0142301_35	PF01520,PF01471,MF_00562,TIGR02883,NF038080,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0142301_36	phrog_774	58.3	1.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0142301_36	397290.C810_05225	74.3	2.67e-16	N/A	N/A
PHROG	UHGV-0142301_37	phrog_355	51.9	0.0000000000000096	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142301_37	UniRef90_A0A385Q0Q2	103.0	7.54e-27	N/A	N/A
eggNOG-mapper	UHGV-0142301_37	1256908.HMPREF0373_00479	99.8	4.2e-26	N/A	N/A
Pfam	UHGV-0142301_37	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0142301_37	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-0142301_38	phrog_443	54.8	0.0000000000000027	holin	lysis
UniRef90	UHGV-0142301_38	UniRef90_UPI000C75746C	107.0	6.77e-29	holin	N/A
eggNOG-mapper	UHGV-0142301_38	626523.GCWU000342_01012	87.4	1.04e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0142301_38	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0142301_38	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0142301_39	phrog_959	81.6	7.7e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142301_39	UniRef90_UPI000773ECC9	171.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0142301_39	1229751.R9QM99_9CAUD	68.9	0.0000000000185	HNH endonuclease	N/A
PADLOC	UHGV-0142301_39	HEase_00016	69.1	1.6e-19	homing endonuclease	RM
Pfam	UHGV-0142301_39	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0142301_39	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
structural_annotation	UHGV-0142301_39	PF13392,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0142301_40	K06909	275.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0142301_40	phrog_2	118.6	8.8e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0142301_40	UniRef90_A0A349YI29	618.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0142301_40	666686.B1NLA3E_01190	437.0	0	phage terminase, large subunit	N/A
Pfam	UHGV-0142301_40	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0142301_40	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0142301_40	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0142301_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0142301_40	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0142301_41	phrog_309	120.6	1.1e-35	terminase small subunit	head and packaging
UniRef90	UHGV-0142301_41	UniRef90_A0A843GSL4	130.0	1.21e-34	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0142301_41	742733.HMPREF9469_01828	102.0	7.03e-25	transposase activity	N/A
Pfam	UHGV-0142301_41	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0142301_41	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0142301	Yes	31,956	35	64	1
UHGV-1479696	No	29,681	35	60	1
UHGV-1576776	No	22,384	35	45	1
UHGV-0201487	No	21,152	35	42	1