vOTU vOTU-020588

vOTU: vOTU-020588

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-020588
Number of genomes	7
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00027 → vGENUS-23636 → vOTU-020588
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1458176
Biosample ID	N/A
Genome length (bp)	34,451 bps
CheckV completeness	75.20% (Medium-quality)
CDS count	52
CDS density	92.79%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1208	Host agreement	85.26
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	369	Host agreement	94.58

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 75.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1458176_1	K14059	156.8	0	int; integrase	N/A
PHROG	UHGV-1458176_1	phrog_1	173.5	0	integrase	integration and excision
UniRef90	UHGV-1458176_1	UniRef90_A0A412L7T7	696.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1458176_1	1540257.JQMW01000011_gene2033	323.0	0	Phage integrase family	N/A
Pfam	UHGV-1458176_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1458176_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1458176_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1458176_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1458176_2	K22299	57.4	3.5e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1458176_2	phrog_8	62.0	1.3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1458176_2	UniRef90_A0A374NFM5	128.0	9e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1458176_2	1567011.A0A0A7RUJ5_9VIRU	68.9	0.0000000000000138	protein disulfide oxidoreductase activity	N/A
PADLOC	UHGV-1458176_2	retron_type_VI_hth_cluster2_1	45.7	0.0000000000018	N/A	Retron
Pfam	UHGV-1458176_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1458176_2	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458176_3	PF15968	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458176_4	PF20505,MF_00194,NF001462,COG2974	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_5	phrog_87	62.4	5.4e-18	metallo-protease	other
UniRef90	UHGV-1458176_5	UniRef90_A7VVX5	102.0	3.73e-25	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1458176_5	428125.CLOLEP_02739	102.0	6.26e-26	N/A	N/A
COG	UHGV-1458176_5	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1458176_5	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_6	phrog_8	42.9	0.0000000000096	transcriptional regulator	transcription regulation
UniRef90	UHGV-1458176_6	UniRef90_A0A413K864	250.0	0	XRE family transcriptional regulator	N/A
COG	UHGV-1458176_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1458176_6	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1458176_7	97138.C820_00203	49.7	0.0000023	Transcriptional	N/A
COG	UHGV-1458176_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1458176_8	phrog_3882	42.5	0.0000000000071	N/A	unknown function
PHROG	UHGV-1458176_9	phrog_1305	80.9	1.4e-23	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1458176_9	UniRef90_A0A413K8G3	300.0	0	N/A	N/A
eggNOG-mapper	UHGV-1458176_9	666686.B1NLA3E_01305	112.0	1.41e-28	N/A	N/A
KOfam	UHGV-1458176_10	K15773	52.0	0.000000000000014	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-1458176_10	phrog_3	49.4	0.00000000000019	transcriptional repressor	transcription regulation
UniRef90	UHGV-1458176_10	UniRef90_A0A374N3U7	128.0	1.27e-37	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1458176_10	866536.Belba_0874	47.0	0.00000422	transcriptional regulator	N/A
Pfam	UHGV-1458176_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1458176_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1458176_10	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1458176_12	1235835.C814_03153	46.6	0.00000999	N/A	N/A
structural_annotation	UHGV-1458176_12	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-1458176_16	K03546	55.7	3.9e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1458176_16	phrog_1499	479.8	0	N/A	unknown function
UniRef90	UHGV-1458176_16	UniRef90_A0A2N0UXU2	751.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-1458176_16	645991.Sgly_0320	503.0	0	domain protein	N/A
Pfam	UHGV-1458176_16	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1458176_16	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1458176_16	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_18	phrog_124	265.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1458176_18	UniRef90_A0A2N0UXR5	687.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-1458176_18	411462.DORLON_00811	428.0	0	AAA domain	N/A
Pfam	UHGV-1458176_18	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1458176_18	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_19	phrog_2698	176.6	0	N/A	unknown function
UniRef90	UHGV-1458176_19	UniRef90_UPI000F54335B	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-1458176_19	742723.HMPREF9477_00927	139.0	7.44e-40	N/A	N/A
structural_annotation	UHGV-1458176_19	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-1458176_20	K17677	360.9	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1458176_20	phrog_16	297.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1458176_20	UniRef90_A0A412ULZ3	1046.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-1458176_20	1235798.C817_03499	835.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1458176_20	mREase_IV_00005	132.2	4.4e-39	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1458176_20	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1458176_20	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1458176_20	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1458176_20	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-1458176_21	K07505	408.7	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1458176_21	phrog_2597	1174.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1458176_21	UniRef90_A0A2N0UXP7	1439.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-1458176_21	394503.Ccel_3304	966.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1458176_21	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1458176_21	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1458176_21	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1458176_21	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_22	phrog_140	89.6	3.6e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1458176_22	UniRef90_A0A2N0UXU6	258.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1458176_22	411462.DORLON_00806	208.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1458176_22	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1458176_22	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1458176_22	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458176_23	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_27	phrog_301	75.0	9.2e-22	secreted protein	other
UniRef90	UHGV-1458176_27	UniRef90_UPI00112B19FF	95.1	6.39e-23	N/A	N/A
eggNOG-mapper	UHGV-1458176_27	397290.C810_05192	106.0	6.25e-28	N/A	N/A
structural_annotation	UHGV-1458176_27	PF07509,MF_00720,NF038397,COG3390	N/A	N/A	N/A	N/A
UniRef90	UHGV-1458176_30	UniRef90_UPI000E4DC4DA	133.0	3.99e-37	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1458176_30	PF15597	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_32	phrog_36	86.7	2.9e-25	transcriptional regulator	transcription regulation
UniRef90	UHGV-1458176_32	UniRef90_A0A2N0UXQ6	261.0	0	N/A	N/A
eggNOG-mapper	UHGV-1458176_32	1401067.HMPREF0872_06835	97.1	6.45e-24	N/A	N/A
Pfam	UHGV-1458176_32	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1458176_32	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-1458176_33	K06909	398.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1458176_33	phrog_3717	146.6	4.2039e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1458176_33	UniRef90_A0A2N0ULW5	1036.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1458176_33	411461.DORFOR_01162	618.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1458176_33	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1458176_33	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1458176_33	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1458176_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1458176_33	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_34	phrog_533	325.2	0	portal protein	head and packaging
UniRef90	UHGV-1458176_34	UniRef90_A0A2N0ULU9	824.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1458176_34	1304866.K413DRAFT_3035	464.0	0	N/A	N/A
structural_annotation	UHGV-1458176_34	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_35	phrog_581	318.8	0	minor head protein	head and packaging
UniRef90	UHGV-1458176_35	UniRef90_A0A2N0ULU5	745.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-1458176_35	1449050.JNLE01000003_gene3892	369.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1458176_35	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1458176_35	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458176_35	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_37	phrog_478	129.5	1.1e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1458176_37	UniRef90_A0A285PT53	147.0	2.56438e-43	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-1458176_37	478749.BRYFOR_08526	149.0	1.54143e-44	N/A	N/A
PHROG	UHGV-1458176_38	phrog_2616	45.6	0.0000000000014	N/A	unknown function
structural_annotation	UHGV-1458176_38	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_39	phrog_194	101.8	7.5e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-1458176_39	UniRef90_A0A2N0ULW9	330.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1458176_39	742765.HMPREF9457_02126	176.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1458176_39	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1458176_39	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_40	phrog_422	226.5	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1458176_40	693746.OBV_18090	395.0	0	N/A	N/A
structural_annotation	UHGV-1458176_40	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_41	phrog_541	80.4	1.8e-23	head-tail adaptor	connector
UniRef90	UHGV-1458176_41	UniRef90_A0A371AQT0	109.0	1.94e-28	N/A	N/A
eggNOG-mapper	UHGV-1458176_41	1449050.JNLE01000003_gene3888	82.0	1.7e-18	N/A	N/A
PHROG	UHGV-1458176_42	phrog_3366	71.0	1.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-1458176_42	1449050.JNLE01000003_gene3887	86.3	7.14e-20	N/A	N/A
Pfam	UHGV-1458176_42	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1458176_42	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_43	phrog_556	118.8	1.5e-35	minor head protein	head and packaging
UniRef90	UHGV-1458176_43	UniRef90_UPI00189BC4F9	184.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1458176_43	1449050.JNLE01000003_gene3886	177.0	0	N/A	N/A
Pfam	UHGV-1458176_43	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1458176_43	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_44	phrog_3266	102.8	2.1e-30	tail completion	connector
eggNOG-mapper	UHGV-1458176_44	1449050.JNLE01000003_gene3885	144.0	1.86933e-42	N/A	N/A
structural_annotation	UHGV-1458176_44	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_45	phrog_3099	149.7	1.12104e-44	N/A	unknown function
eggNOG-mapper	UHGV-1458176_45	1160721.RBI_II00532	237.0	0	N/A	N/A
structural_annotation	UHGV-1458176_45	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_46	phrog_11299	135.3	2.8e-40	N/A	unknown function
eggNOG-mapper	UHGV-1458176_46	1449050.JNLE01000003_gene3883	96.7	1.22e-23	N/A	N/A
structural_annotation	UHGV-1458176_46	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_47	phrog_706	140.9	6.69961e-42	N/A	unknown function
UniRef90	UHGV-1458176_47	UniRef90_A0A2N0ULW2	369.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1458176_47	1160721.RBI_II00530	212.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1458176_47	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1458176_47	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_49	phrog_1535	465.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1458176_49	UniRef90_A0A2N0ULX3	1497.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1458176_49	33035.JPJF01000093_gene2243	348.0	0	phage tail tape measure protein	N/A
COG	UHGV-1458176_49	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1458176_49	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1458176_50	phrog_1194	57.7	1.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-1458176_50	397290.C810_05238	92.8	2.89e-22	N/A	N/A
Pfam	UHGV-1458176_50	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1458176_50	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458176_51	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1458176	Yes	34,451	41	75	1
UHGV-0081480	No	34,363	41	75	1
UHGV-1426457	No	34,363	41	75	1
UHGV-0111255	No	34,042	42	74	1
UHGV-1421385	No	34,042	42	74	1
UHGV-0325792	No	33,656	41	73	1
UHGV-0098822	No	33,202	42	72	1