vOTU vOTU-020666

vOTU: vOTU-020666

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-020666
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vOTU-020666
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp900317525
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1471792
Biosample ID	N/A
Genome length (bp)	30,484 bps
CheckV completeness	71.51% (Medium-quality)
CDS count	49
CDS density	96.15%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp900317525	Total connections	1	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 71.51)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
dbAPIS	UHGV-1471792_1	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
PHROG	UHGV-1471792_5	phrog_7838	154.5	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1471792_5	UniRef90_A0A8D9UGW3	258.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1471792_5	742767.HMPREF9456_02397	175.0	0	N/A	N/A
structural_annotation	UHGV-1471792_5	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_6	phrog_398	174.1	0	N/A	unknown function
UniRef90	UHGV-1471792_6	UniRef90_UPI00137B6F1E	365.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1471792_6	1485543.JMME01000021_gene802	178.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1471792_6	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1471792_6	PF16784	N/A	N/A	N/A	N/A
UniRef90	UHGV-1471792_8	UniRef90_G9YN41	67.0	0.000000000000158	DNA binding domain, excisionase family	N/A
Pfam	UHGV-1471792_8	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1471792_8	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-1471792_9	K03111	136.8	2.5e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1471792_9	phrog_44	138.6	4.10006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1471792_9	UniRef90_A0A350TKS2	179.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1471792_9	1007096.BAGW01000023_gene151	172.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1471792_9	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1471792_9	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1471792_9	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1471792_9	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1471792_9	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_10	phrog_9474	90.2	2.9e-26	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1471792_10	1122917.KB899659_gene5710	85.1	4.88e-18	Replication initiation and membrane attachment	N/A
COG	UHGV-1471792_10	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1471792_10	PF09681,TIGR01714	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1471792_11	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1471792_12	K01160	40.2	0.000000000083	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1471792_12	phrog_4632	42.5	0.00000000000037	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1471792_12	UniRef90_A0A7X8IB41	99.8	1.41e-24	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1471792_12	556263.FSEG_00477	52.0	0.000000965	N/A	N/A
structural_annotation	UHGV-1471792_12	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1471792_13	K00558	143.4	8.40779e-45	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1471792_13	phrog_363	235.2	0	DNA methyltransferase	other
UniRef90	UHGV-1471792_13	UniRef90_UPI00082E0CBC	401.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1471792_13	742738.HMPREF9460_04053	323.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1471792_13	MTase_II_00058	120.3	2.4e-35	Type II methyltransferase	RM
Pfam	UHGV-1471792_13	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1471792_13	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1471792_13	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1471792_13	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1471792_15	K07319	96.5	2.4e-28	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1471792_15	phrog_16	220.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1471792_15	UniRef90_A0A1Q6JHY3	1385.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-1471792_15	1007096.BAGW01000031_gene119	1311.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-1471792_15	MTase_II_00069	42.0	0.00000000000037	Type II methyltransferase	RM
Pfam	UHGV-1471792_15	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1471792_15	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1471792_15	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1471792_15	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_17	phrog_38832	84.8	7.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-1471792_17	665956.HMPREF1032_00143	85.5	1.29e-18	N/A	N/A
PHROG	UHGV-1471792_18	phrog_25732	62.2	2.9e-18	N/A	unknown function
PHROG	UHGV-1471792_19	phrog_924	53.7	0.0000000000000045	N/A	unknown function
UniRef90	UHGV-1471792_19	UniRef90_UPI0019214AF7	67.0	0.000000000000348	N/A	N/A
eggNOG-mapper	UHGV-1471792_19	1316932.MHH_c17560	48.5	0.00000753	N/A	N/A
Pfam	UHGV-1471792_19	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1471792_19	PF04448	N/A	N/A	N/A	N/A
UniRef90	UHGV-1471792_21	UniRef90_A0A8J6J3G6	88.2	1.55e-21	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1471792_21	1226322.HMPREF1545_00039	86.7	1.24e-21	sequence-specific DNA binding	N/A
Pfam	UHGV-1471792_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1471792_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1471792_21	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_23	phrog_309	150.2	4.2039e-45	terminase small subunit	head and packaging
UniRef90	UHGV-1471792_23	UniRef90_A0A8J6MDX5	177.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1471792_23	1007096.BAGW01000022_gene2658	156.0	0	transposase activity	N/A
COG	UHGV-1471792_23	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
KOfam	UHGV-1471792_24	K06909	385.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1471792_24	phrog_3717	159.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1471792_24	UniRef90_A0A2U1BEH4	711.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1471792_24	33035.JPJF01000106_gene3136	485.0	0	Terminase small subunit	N/A
Pfam	UHGV-1471792_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1471792_24	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1471792_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1471792_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1471792_24	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_25	phrog_533	386.2	0	portal protein	head and packaging
UniRef90	UHGV-1471792_25	UniRef90_A0A1C5N775	634.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1471792_25	1226322.HMPREF1545_00044	589.0	0	N/A	N/A
Pfam	UHGV-1471792_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1471792_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_26	phrog_581	284.4	0	minor head protein	head and packaging
UniRef90	UHGV-1471792_26	UniRef90_A0A1C5N7V1	532.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1471792_26	1226322.HMPREF1545_00046	373.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1471792_26	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1471792_26	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1471792_26	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_28	phrog_2303	61.3	1.5e-17	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1471792_28	1226322.HMPREF1545_00049	155.0	0	N/A	N/A
AcrCatalog	UHGV-1471792_28	cluster_74817	64.7	0.0000000000000024	NA	N/A
PHROG	UHGV-1471792_29	phrog_10	180.9	0	major head protein	head and packaging
UniRef90	UHGV-1471792_29	UniRef90_UPI00137B7B46	507.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1471792_29	1226322.HMPREF1545_00050	422.0	0	Phage capsid family	N/A
Pfam	UHGV-1471792_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1471792_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1471792_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1471792_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_30	phrog_541	102.4	2.8e-30	head-tail adaptor	connector
eggNOG-mapper	UHGV-1471792_30	642492.Clole_0822	66.2	0.00000000000591	N/A	N/A
PHROG	UHGV-1471792_31	phrog_3366	106.6	1.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-1471792_31	1226322.HMPREF1545_00053	205.0	0	N/A	N/A
structural_annotation	UHGV-1471792_31	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_32	phrog_556	61.4	1.4e-17	minor head protein	head and packaging
UniRef90	UHGV-1471792_32	UniRef90_A0A2U1BEM0	181.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1471792_32	1226322.HMPREF1545_00054	155.0	0	Minor capsid protein	N/A
Pfam	UHGV-1471792_32	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1471792_32	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_33	phrog_3266	52.8	0.0000000000000064	tail completion	connector
eggNOG-mapper	UHGV-1471792_33	1232443.BAIA02000078_gene24	227.0	0	N/A	N/A
structural_annotation	UHGV-1471792_33	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_34	phrog_3099	88.8	7.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-1471792_34	1232443.BAIA02000078_gene23	235.0	0	N/A	N/A
structural_annotation	UHGV-1471792_34	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_35	phrog_11299	70.6	2.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-1471792_35	693746.OBV_18160	208.0	0	N/A	N/A
structural_annotation	UHGV-1471792_35	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_36	phrog_706	118.2	6.2e-35	N/A	unknown function
UniRef90	UHGV-1471792_36	UniRef90_UPI000682A80B	253.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1471792_36	693746.OBV_18170	250.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1471792_36	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1471792_36	PF06854	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1471792_38	411473.RUMCAL_03485	60.5	0.0000000000953	TM2 domain	N/A
COG	UHGV-1471792_38	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1471792_38	PF05154,COG2314	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_39	phrog_1535	204.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1471792_39	UniRef90_A0A1C5N853	338.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1471792_39	1235797.C816_04182	194.0	0	SLT domain	N/A
COG	UHGV-1471792_39	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_40	phrog_1194	90.5	1.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-1471792_40	1232443.BAIA02000078_gene17	145.0	1.02295e-43	N/A	N/A
Pfam	UHGV-1471792_40	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1471792_40	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_41	phrog_6616	46.6	0.0000000000002	tail protein	tail
UniRef90	UHGV-1471792_41	UniRef90_A0A2Z4QA17	278.0	0	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-1471792_41	1235797.C816_04180	344.0	0	N/A	N/A
structural_annotation	UHGV-1471792_41	PF21683,TIGR02126,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_42	phrog_1899	46.8	0.00000000000013	N/A	unknown function
UniRef90	UHGV-1471792_42	UniRef90_A0A7X5DZH6	231.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1471792_42	1235797.C816_04179	259.0	0	Chaperone of endosialidase	N/A
eggNOG-mapper	UHGV-1471792_44	1519439.JPJG01000060_gene1892	101.0	8.63e-22	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-1471792_44	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1471792_44	PF20622,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_45	phrog_13589	48.9	1.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-1471792_45	411471.SUBVAR_06929	347.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-1471792_45	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-1471792_46	NF012201	N/A	N/A	N/A	N/A
PHROG	UHGV-1471792_48	phrog_4105	66.4	4e-19	N/A	unknown function
eggNOG-mapper	UHGV-1471792_48	411460.RUMTOR_01326	57.0	0.00000000275	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1471792	Yes	30,484	56	72	1
UHGV-0064559	No	10,837	56	26	1
UHGV-0063110	No	10,970	55	25	1
UHGV-0361726	No	10,953	55	25	1