vOTU vOTU-020753

vOTU: vOTU-020753

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-020753
Number of genomes	6
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Intestinimonas → Intestinimonas massiliensis
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-03646 → vOTU-020753
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Intestinimonas → Intestinimonas massiliensis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0456546
Biosample ID	N/A
Genome length (bp)	29,528 bps
CheckV completeness	69.13% (Medium-quality)
CDS count	45
CDS density	91.26%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Intestinimonas → Intestinimonas massiliensis	Total connections	77	Host agreement	97.4
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Intestinimonas → Intestinimonas massiliensis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 69.13)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0456546_2	PF19070	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0456546_3	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_4	phrog_2412	78.7	7.5e-23	N/A	unknown function
UniRef90	UHGV-0456546_4	UniRef90_UPI0011CC13F5	67.8	0.00000000000618	stress-induced protein	N/A
eggNOG-mapper	UHGV-0456546_4	742738.HMPREF9460_02504	83.6	5.19e-19	N/A	N/A
KOfam	UHGV-0456546_5	K06909	116.2	3.9e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0456546_5	phrog_2	118.8	8.7e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0456546_5	UniRef90_A0A3D3FC70	593.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0456546_5	936375.HMPREF1152_1069	291.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0456546_5	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0456546_5	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0456546_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0456546_5	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_6	phrog_533	328.7	0	portal protein	head and packaging
UniRef90	UHGV-0456546_6	UniRef90_A0A858BRS2	553.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0456546_6	645991.Sgly_0336	616.0	0	N/A	N/A
Pfam	UHGV-0456546_6	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0456546_6	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_7	phrog_581	357.8	0	minor head protein	head and packaging
UniRef90	UHGV-0456546_7	UniRef90_A0A2V2FIV7	487.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0456546_7	645991.Sgly_0338	467.0	0	N/A	N/A
Pfam	UHGV-0456546_7	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0456546_7	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0456546_7	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_9	phrog_194	107.4	1.6e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-0456546_9	UniRef90_UPI001F379BB0	216.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0456546_9	411471.SUBVAR_06994	169.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0456546_9	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0456546_9	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_10	phrog_283	311.3	0	major head protein	head and packaging
UniRef90	UHGV-0456546_10	UniRef90_A0A1C6I0L7	458.0	0	p22 coat protein-gene protein 5	N/A
eggNOG-mapper	UHGV-0456546_10	1499683.CCFF01000014_gene3908	451.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-0456546_10	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0456546_10	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_11	phrog_541	80.1	2.3e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-0456546_11	1120998.AUFC01000030_gene2237	74.3	0.000000000000001	N/A	N/A
PHROG	UHGV-0456546_12	phrog_3366	116.3	2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0456546_12	645991.Sgly_0343	141.0	1.04004e-41	N/A	N/A
Pfam	UHGV-0456546_12	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0456546_12	PF20536,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_13	phrog_556	67.5	1.9e-19	minor head protein	head and packaging
UniRef90	UHGV-0456546_13	UniRef90_UPI0011781EF8	120.0	1.38e-32	minor capsid protein	N/A
eggNOG-mapper	UHGV-0456546_13	411902.CLOBOL_00131	94.0	9.67e-23	Minor capsid protein	N/A
Pfam	UHGV-0456546_13	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0456546_13	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_14	phrog_3266	95.5	4.3e-28	tail completion	connector
eggNOG-mapper	UHGV-0456546_14	411490.ANACAC_00773	64.3	0.0000000000421	N/A	N/A
structural_annotation	UHGV-0456546_14	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_15	phrog_3099	86.4	3.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0456546_15	693746.OBV_18150	299.0	0	N/A	N/A
structural_annotation	UHGV-0456546_15	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_16	phrog_2657	166.5	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0456546_16	UniRef90_A0A0V8QIT3	298.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0456546_16	411490.ANACAC_00702	263.0	0	phage regulatory protein, rha family	N/A
Pfam	UHGV-0456546_16	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0456546_16	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0456546_16	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0456546_16	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_17	phrog_11299	77.7	1.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0456546_17	693746.OBV_18160	228.0	0	N/A	N/A
structural_annotation	UHGV-0456546_17	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_18	phrog_706	127.8	7.1e-38	N/A	unknown function
UniRef90	UHGV-0456546_18	UniRef90_UPI000682A80B	276.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0456546_18	693746.OBV_18170	286.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0456546_18	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0456546_18	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_20	phrog_1535	97.6	2.1e-38	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0456546_20	693746.OBV_18190	387.0	0	domain protein	N/A
COG	UHGV-0456546_20	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0456546_20	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_21	phrog_1194	51.0	0.000000000000022	N/A	unknown function
eggNOG-mapper	UHGV-0456546_21	1226322.HMPREF1545_00060	174.0	0	N/A	N/A
structural_annotation	UHGV-0456546_21	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_22	phrog_13879	320.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0456546_22	693746.OBV_18210	642.0	0	N/A	N/A
structural_annotation	UHGV-0456546_22	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_23	phrog_18725	104.5	8.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-0456546_23	1226322.HMPREF1545_00062	144.0	1.38e-41	N/A	N/A
UniRef90	UHGV-0456546_25	UniRef90_UPI001D07CA50	108.0	2.36e-26	acyl carrier protein	N/A
eggNOG-mapper	UHGV-0456546_25	1297617.JPJD01000014_gene875	224.0	0	N/A	N/A
structural_annotation	UHGV-0456546_25	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_26	phrog_20274	148.2	2.94273e-44	N/A	unknown function
UniRef90	UHGV-0456546_26	UniRef90_UPI001C3F12B9	185.0	0	putative ABC transporter permease	N/A
eggNOG-mapper	UHGV-0456546_26	657322.FPR_21900	175.0	0	N/A	N/A
Pfam	UHGV-0456546_26	PF06541	N/A	N/A	Putative ABC-transporter type IV	ABC_trans_CmpB
COG	UHGV-0456546_26	COG4905	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0456546_26	PF06541,COG4905	N/A	N/A	N/A	N/A
KOfam	UHGV-0456546_27	K19721	128.0	3e-38	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0456546_27	phrog_819	122.5	4.2e-37	tail protein	tail
Pfam	UHGV-0456546_27	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-0456546_28	K01448	162.5	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0456546_28	phrog_435	162.6	0	endolysin	lysis
UniRef90	UHGV-0456546_28	UniRef90_A0A6A8VJA4	480.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0456546_28	1121344.JHZO01000003_gene744	235.0	0	Ami_3	N/A
Pfam	UHGV-0456546_28	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0456546_28	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0456546_28	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0456546_28	PF01520,PF09992,MF_00417,TIGR02883,COG0860,COG4632	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_29	phrog_263	96.7	1.2e-28	holin	lysis
UniRef90	UHGV-0456546_29	UniRef90_UPI00067ED4AA	155.0	0	phage holin	N/A
eggNOG-mapper	UHGV-0456546_29	1297617.JPJD01000099_gene2175	122.0	2.16e-35	SPP1 phage holin	N/A
Pfam	UHGV-0456546_29	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0456546_29	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0456546_29	PF04688	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_30	phrog_937	57.6	2.7e-16	hemolysin	other
eggNOG-mapper	UHGV-0456546_30	1297617.JPJD01000099_gene2176	103.0	9.09e-28	N/A	N/A
KOfam	UHGV-0456546_31	K03071	46.7	0.00000000000048	secB; preprotein translocase subunit SecB	N/A
PHROG	UHGV-0456546_31	phrog_21664	43.8	0.0000000000054	N/A	unknown function
UniRef90	UHGV-0456546_31	UniRef90_A0A6N3A9W6	103.0	1.35e-25	Preprotein translocase subunit SecB	N/A
eggNOG-mapper	UHGV-0456546_31	1280689.AUJC01000016_gene85	76.3	6.92e-16	protein tetramerization	N/A
Pfam	UHGV-0456546_31	PF02556	N/A	N/A	Preprotein translocase subunit SecB	SecB
COG	UHGV-0456546_31	COG1952	N/A	N/A	Preprotein translocase subunit SecB	N/A
structural_annotation	UHGV-0456546_31	PF02556,MF_00821,NF004391,COG1952	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_33	phrog_14664	51.1	0.000000000000022	N/A	unknown function
structural_annotation	UHGV-0456546_33	PF00644,COG5654	N/A	N/A	N/A	N/A
KOfam	UHGV-0456546_34	K14059	199.9	0	int; integrase	N/A
PHROG	UHGV-0456546_34	phrog_1	177.6	0	integrase	integration and excision
UniRef90	UHGV-0456546_34	UniRef90_UPI001EDEB0AD	682.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0456546_34	1226322.HMPREF1545_00144	334.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0456546_34	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0456546_34	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0456546_34	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0456546_35	phrog_33872	71.5	1.9e-25	N/A	unknown function
KOfam	UHGV-0456546_37	K18830	79.0	7.7e-23	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0456546_37	phrog_8	61.4	1.8e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0456546_37	UniRef90_A0A2U1BEG8	214.0	0	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0456546_37	445972.ANACOL_03315	156.0	0	N/A	N/A
Pfam	UHGV-0456546_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0456546_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0456546_37	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0456546_39	PF09639,TIGR04176	N/A	N/A	N/A	N/A
KOfam	UHGV-0456546_44	K08309	48.0	0.0000000000001	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
UniRef90	UHGV-0456546_44	UniRef90_A0A1C6J857	159.0	1.4013e-45	Transglycosylase SLT domain	N/A
eggNOG-mapper	UHGV-0456546_44	1121413.JMKT01000012_gene610	61.2	0.00000000569	PFAM Lytic transglycosylase catalytic	N/A
Pfam	UHGV-0456546_44	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0456546_44	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0456546	Yes	29,528	55	69	1
UHGV-1675925	No	17,816	53	43	1
UHGV-1344418	No	16,894	53	41	1
UHGV-1647791	No	16,226	53	39	1
UHGV-0137534	No	16,189	53	39	1
UHGV-1657722	No	10,306	55	25	1