vOTU vOTU-020813

vOTU: vOTU-020813

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-020813
Number of genomes	4
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vOTU-020813
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1278863
Biosample ID	SAMN02044695
Genome length (bp)	35,284 bps
CheckV completeness	87.41% (Medium-quality)
CDS count	64
CDS density	88.78%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	Total connections	5	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.41)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
COG	UHGV-1278863_1	COG2771	N/A	N/A	DNA-binding transcriptional regulator, CsgD family	N/A
PHROG	UHGV-1278863_2	phrog_5765	55.5	3.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-1278863_2	1095750.HMPREF9970_1008	64.7	0.00000000000248	N/A	N/A
NCBIFam	UHGV-1278863_2	NF033495.1	N/A	N/A	BC1881 family protein	N/A
KOfam	UHGV-1278863_5	K22300	50.6	0.000000000000044	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1278863_5	phrog_8	64.7	2.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1278863_5	UniRef90_A0A4D7AHN1	124.0	2e-35	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1278863_5	1226322.HMPREF1545_00039	75.1	6.55e-17	sequence-specific DNA binding	N/A
PADLOC	UHGV-1278863_5	retron_type_VI_hth_cluster2_1	40.5	0.000000000069	N/A	Retron
Pfam	UHGV-1278863_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1278863_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1278863_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1278863_9	phrog_3154	43.2	0.0000000000083	N/A	unknown function
UniRef90	UHGV-1278863_10	UniRef90_UPI0009523D83	211.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-1278863_10	1226322.HMPREF1545_00042	179.0	0	N/A	N/A
structural_annotation	UHGV-1278863_10	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-1278863_12	K06909	141.7	7.10038e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1278863_12	phrog_10250	189.6	0	N/A	unknown function
UniRef90	UHGV-1278863_12	UniRef90_UPI000462EB3C	602.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1278863_12	1226322.HMPREF1545_00043	547.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1278863_12	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1278863_12	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1278863_12	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1278863_12	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1278863_13	phrog_64	135.4	1.8e-40	portal protein	head and packaging
UniRef90	UHGV-1278863_13	UniRef90_UPI001AA0B7FF	487.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1278863_13	673376.F2VHW1_9CAUD	203.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1278863_13	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
PHROG	UHGV-1278863_15	phrog_595	135.3	7.2e-40	head maturation protease	head and packaging
UniRef90	UHGV-1278863_15	UniRef90_A0A810PSD3	443.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1278863_15	1504822.CCNO01000013_gene286	172.0	0	cell adhesion	N/A
Pfam	UHGV-1278863_15	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1278863_15	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1278863_15	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1278863_15	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1278863_16	phrog_5	78.3	1.3e-22	tail completion or Neck1 protein	connector
UniRef90	UHGV-1278863_16	UniRef90_UPI001411BC8C	205.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1278863_16	1280685.AUKC01000004_gene1630	117.0	4.71e-32	N/A	N/A
Pfam	UHGV-1278863_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1278863_16	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1278863_16	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1278863_18	phrog_194	54.5	0.0000000000000025	head scaffolding protein	head and packaging
UniRef90	UHGV-1278863_18	UniRef90_A0A6B9SU02	123.0	1.16e-31	Fibronectin autolysin	N/A
structural_annotation	UHGV-1278863_18	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1278863_19	phrog_544	116.0	3.7e-34	major head protein	head and packaging
UniRef90	UHGV-1278863_19	UniRef90_A0A1C6B5R0	338.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1278863_19	476272.RUMHYD_01776	310.0	0	N/A	N/A
structural_annotation	UHGV-1278863_19	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
UniRef90	UHGV-1278863_20	UniRef90_A0A544UKK8	53.1	0.0000000257	Rho_N domain-containing protein	N/A
PHROG	UHGV-1278863_22	phrog_17977	69.5	4.1e-20	N/A	unknown function
UniRef90	UHGV-1278863_22	UniRef90_UPI00141211AB	105.0	3.09e-27	head-tail adaptor protein	N/A
structural_annotation	UHGV-1278863_22	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1278863_23	UniRef90_A0A415JI88	126.0	3.12e-35	N/A	N/A
structural_annotation	UHGV-1278863_23	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1278863_24	phrog_885	84.7	8.8e-25	major tail protein	tail
UniRef90	UHGV-1278863_24	UniRef90_A0A843J9F0	167.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1278863_24	1111121.HMPREF1247_0789	184.0	0	N/A	N/A
structural_annotation	UHGV-1278863_24	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1278863_27	phrog_6900	264.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1278863_27	1499683.CCFF01000017_gene2565	312.0	0	tape measure	N/A
COG	UHGV-1278863_27	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1278863_28	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1278863_29	1232443.BAIA02000078_gene16	135.0	2.27e-36	N/A	N/A
structural_annotation	UHGV-1278863_29	PF21683,TIGR02126,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1278863_30	phrog_7121	57.0	5.5e-17	tail fiber protein	tail
UniRef90	UHGV-1278863_30	UniRef90_A0A856HZ25	257.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1278863_30	1235797.C816_04179	139.0	4.16e-33	Chaperone of endosialidase	N/A
Pfam	UHGV-1278863_30	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1278863_30	PF07902,NF041249	N/A	N/A	N/A	N/A
PHROG	UHGV-1278863_32	phrog_32779	75.7	4.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-1278863_32	1235797.C816_04177	88.6	1.57e-16	alginic acid biosynthetic process	N/A
COG	UHGV-1278863_32	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1278863_35	phrog_10898	271.3	0	N/A	unknown function
UniRef90	UHGV-1278863_35	UniRef90_A0A7U3NJT3	197.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1278863_35	717606.PaecuDRAFT_2136	79.0	0.0000000000000428	S-layer homology domain	N/A
COG	UHGV-1278863_35	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-1278863_35	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1278863_36	PF16408,NF033510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1278863_37	1232443.BAIA02000078_gene14	88.6	8.48e-16	nuclear chromosome segregation	N/A
COG	UHGV-1278863_37	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-1278863_38	phrog_3904	48.9	0.000000000000038	tail fiber protein	tail
eggNOG-mapper	UHGV-1278863_38	1203606.HMPREF1526_02029	61.2	0.0000000122	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1278863_38	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1278863_38	COG1409	N/A	N/A	3',5'-cyclic AMP phosphodiesterase CpdA	N/A
PHROG	UHGV-1278863_42	phrog_19111	127.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1278863_42	756499.Desde_3162	77.0	0.000000000000859	nuclear chromosome segregation	N/A
COG	UHGV-1278863_42	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
eggNOG-mapper	UHGV-1278863_43	1007096.BAGW01000017_gene815	102.0	3.66e-27	N/A	N/A
UniRef90	UHGV-1278863_44	UniRef90_A0A1C6FDZ1	333.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1278863_44	397291.C804_01109	198.0	0	Phage lysozyme	N/A
Pfam	UHGV-1278863_44	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
COG	UHGV-1278863_44	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1278863_44	PF03412,COG4990	N/A	N/A	N/A	N/A
PHROG	UHGV-1278863_45	phrog_1863	68.3	6.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-1278863_45	693746.OBV_18260	63.2	0.00000000000449	N/A	N/A
UniRef90	UHGV-1278863_46	UniRef90_A0A1C6JAI6	81.6	1.25e-18	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-1278863_46	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1278863_48	phrog_3754	110.7	1.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-1278863_48	476272.RUMHYD_01764	186.0	0	N/A	N/A
PHROG	UHGV-1278863_49	phrog_21718	120.0	1.7e-35	N/A	unknown function
eggNOG-mapper	UHGV-1278863_49	397290.C810_05210	109.0	4.26e-28	N/A	N/A
PHROG	UHGV-1278863_50	phrog_22984	77.8	9.7e-23	N/A	unknown function
PHROG	UHGV-1278863_51	phrog_16490	174.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1278863_51	1408437.JNJN01000043_gene803	165.0	0	N/A	N/A
PHROG	UHGV-1278863_52	phrog_20016	201.7	0	N/A	unknown function
UniRef90	UHGV-1278863_52	UniRef90_A0A2Z4QB67	187.0	0	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-1278863_52	1226322.HMPREF1545_00077	187.0	0	N/A	N/A
structural_annotation	UHGV-1278863_52	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1278863_54	1226322.HMPREF1545_00079	102.0	8.84e-27	N/A	N/A
KOfam	UHGV-1278863_55	K14059	155.4	0	int; integrase	N/A
PHROG	UHGV-1278863_55	phrog_1	164.3	0	integrase	integration and excision
UniRef90	UHGV-1278863_55	UniRef90_A0A1C5W824	513.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1278863_55	693746.OBV_41260	298.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1278863_55	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1278863_55	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1278863_55	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1278863_56	1384066.JAGT01000001_gene1516	62.0	0.000000000911	N/A	N/A
structural_annotation	UHGV-1278863_56	PF13560,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1278863_57	UniRef90_A0A212KHQ5	236.0	0	Cu_amine_oxidN1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1278863_57	1203606.HMPREF1526_00218	196.0	0	Copper amine oxidase N-terminal domain	N/A
Pfam	UHGV-1278863_57	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
COG	UHGV-1278863_57	COG1555	N/A	N/A	DNA uptake protein ComE or related DNA-binding protein	N/A
PHROG	UHGV-1278863_60	phrog_750	44.3	0.000000000000035	N/A	unknown function
eggNOG-mapper	UHGV-1278863_60	742723.HMPREF9477_00931	51.2	0.000000489	N/A	N/A
structural_annotation	UHGV-1278863_60	COG1321	N/A	N/A	N/A	N/A
UniRef90	UHGV-1278863_63	UniRef90_A0A1C7FQD9	94.4	1.14e-23	Transcriptional regulator	N/A
Pfam	UHGV-1278863_63	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
UniRef90	UHGV-1278863_64	UniRef90_A0A8D9PDM8	72.4	0.00000000000000237	Pyocin activator protein	N/A
structural_annotation	UHGV-1278863_64	PF11112,COG3311	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1278863	Yes	35,284	50	87	1
UHGV-1306915	No	15,104	53	37	1
UHGV-1316811	No	12,537	51	31	1
UHGV-1280939	No	10,200	49	25	1