vOTU vOTU-020819

vOTU: vOTU-020819

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-020819
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vOTU-020819
Host lineage
Host range breadth
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1289510
Biosample ID	N/A
Genome length (bp)	29,263 bps
CheckV completeness	67.99% (Medium-quality)
CDS count	52
CDS density	86.61%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 67.99)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1289510_2	UniRef90_UPI00096A7D52	65.1	0.0000000000018	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1289510_2	195103.CPF_0929	49.3	0.000000605	Helix-turn-helix	N/A
Pfam	UHGV-1289510_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1289510_2	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_4	phrog_585	73.3	3.8e-21	N/A	unknown function
UniRef90	UHGV-1289510_4	UniRef90_A0A413B154	70.5	0.000000000000774	N/A	N/A
eggNOG-mapper	UHGV-1289510_4	1033744.CAEL01000029_gene1306	60.8	0.0000000015	N/A	N/A
Pfam	UHGV-1289510_4	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1289510_4	PF10711,TIGR04176,COG1695	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1289510_10	1158614.I592_00581	45.4	0.00000528	N/A	N/A
UniRef90	UHGV-1289510_11	UniRef90_A0A1E3AYL2	103.0	1.14e-27	Arc-like DNA binding domain protein	N/A
eggNOG-mapper	UHGV-1289510_11	1235797.C816_00233	67.0	0.0000000000000368	Arc-like DNA binding domain	N/A
Pfam	UHGV-1289510_11	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc
UniRef90	UHGV-1289510_12	UniRef90_A0A1R2F8U8	51.6	0.0000000965	Arc family DNA-binding protein	N/A
Pfam	UHGV-1289510_12	PF12441	N/A	N/A	CopG antitoxin of type II toxin-antitoxin system	CopG_antitoxin
structural_annotation	UHGV-1289510_12	PF07878,NF041793,COG4877	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_13	phrog_31229	121.7	3.6e-36	N/A	unknown function
UniRef90	UHGV-1289510_13	UniRef90_A0A0A7G1F3	124.0	1.64e-34	Putative membrane protein	N/A
eggNOG-mapper	UHGV-1289510_13	1280692.AUJL01000009_gene2925	130.0	1.11e-37	N/A	N/A
structural_annotation	UHGV-1289510_15	PF21291,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1289510_16	K01356	151.9	5.60519e-45	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1289510_16	phrog_4	114.9	9.3e-34	transcriptional repressor	transcription regulation
UniRef90	UHGV-1289510_16	UniRef90_UPI00164C6CD0	233.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1289510_16	718252.FP2_06870	188.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1289510_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1289510_16	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1289510_16	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1289510_16	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1289510_18	UniRef90_A0A328UBY0	602.0	0	Cell filamentation protein Fic	N/A
eggNOG-mapper	UHGV-1289510_18	1035196.HMPREF9998_00638	508.0	0	Virulence protein RhuM family	N/A
Pfam	UHGV-1289510_18	PF13310	N/A	N/A	Virulence protein RhuM family	Virulence_RhuM
COG	UHGV-1289510_18	COG3943	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1289510_18	PF13310,TIGR02681,COG3943	N/A	N/A	N/A	N/A
KOfam	UHGV-1289510_19	K18843	78.5	1.3e-22	hicB; antitoxin HicB	N/A
PHROG	UHGV-1289510_19	phrog_497	79.9	4.8e-23	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1289510_19	UniRef90_A0A6G3M3A2	187.0	0	Type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-1289510_19	657322.FPR_23750	181.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-1289510_19	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-1289510_19	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-1289510_19	PF15919,COG1598	N/A	N/A	N/A	N/A
KOfam	UHGV-1289510_20	K07339	63.4	3.5e-18	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-1289510_20	phrog_353	87.8	6.7e-26	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1289510_20	UniRef90_A0A3E2U499	112.0	2.08e-31	Type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-1289510_20	478749.BRYFOR_07601	87.4	2.83e-22	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-1289510_20	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-1289510_20	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-1289510_20	PF07927,COG1724	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_21	phrog_30113	285.0	0	N/A	unknown function
UniRef90	UHGV-1289510_21	UniRef90_UPI00189A389B	285.0	0	N/A	N/A
eggNOG-mapper	UHGV-1289510_21	585501.HMPREF6123_0869	234.0	0	N/A	N/A
Pfam	UHGV-1289510_21	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-1289510_21	PF01351,MF_00052_A,TIGR00729,COG1039	N/A	N/A	N/A	N/A
KOfam	UHGV-1289510_22	K06400	304.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1289510_22	phrog_95	344.8	0	integrase	integration and excision
UniRef90	UHGV-1289510_22	UniRef90_A0A3A9ED02	526.0	0	Site-specific recombinase	N/A
eggNOG-mapper	UHGV-1289510_22	1378168.N510_03180	328.0	0	resolvase	N/A
Pfam	UHGV-1289510_22	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1289510_22	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1289510_22	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1289510_22	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1289510_22	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1289510_23	1226322.HMPREF1545_00079	135.0	5.9e-40	N/A	N/A
PHROG	UHGV-1289510_25	phrog_20016	221.2	0	N/A	unknown function
UniRef90	UHGV-1289510_25	UniRef90_A0A285PT46	182.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1289510_25	1226322.HMPREF1545_00077	228.0	0	N/A	N/A
structural_annotation	UHGV-1289510_25	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_26	phrog_16490	150.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1289510_26	1226322.HMPREF1545_00076	204.0	0	N/A	N/A
PHROG	UHGV-1289510_27	phrog_22984	106.3	1.6e-31	N/A	unknown function
PHROG	UHGV-1289510_28	phrog_21718	66.1	6.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-1289510_28	397290.C810_05210	60.8	0.000000000357	N/A	N/A
PHROG	UHGV-1289510_29	phrog_3754	110.9	1.1e-32	N/A	unknown function
eggNOG-mapper	UHGV-1289510_29	476272.RUMHYD_01764	176.0	0	N/A	N/A
structural_annotation	UHGV-1289510_31	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_33	phrog_1129	82.3	3.7e-24	holin	lysis
UniRef90	UHGV-1289510_33	UniRef90_A0A3D0M3S7	109.0	1.49e-29	Holin	N/A
eggNOG-mapper	UHGV-1289510_33	1216932.CM240_1835	100.0	7.97e-27	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1289510_33	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1289510_33	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_34	phrog_937	57.9	1.1e-16	hemolysin	other
eggNOG-mapper	UHGV-1289510_34	428125.CLOLEP_00170	97.8	6.02e-25	N/A	N/A
KOfam	UHGV-1289510_35	K21472	55.6	0.0000000000000013	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	N/A
PHROG	UHGV-1289510_35	phrog_7767	49.0	0.00000000000007	metallo-endopeptidase	other
eggNOG-mapper	UHGV-1289510_35	1192759.AKIB01000011_gene2658	63.2	0.00000000465	COG0739 Membrane proteins related to metalloendopeptidases	N/A
Pfam	UHGV-1289510_35	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-1289510_35	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
eggNOG-mapper	UHGV-1289510_37	2754.EH55_00535	94.4	1.99e-19	N/A	N/A
structural_annotation	UHGV-1289510_37	PF03426,TIGR04362	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_39	phrog_5555	118.2	6.8e-36	tail protein	tail
eggNOG-mapper	UHGV-1289510_39	1235797.C816_04179	172.0	1.4013e-45	Chaperone of endosialidase	N/A
structural_annotation	UHGV-1289510_39	NF041249,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_40	phrog_6616	67.1	1.4e-19	tail protein	tail
UniRef90	UHGV-1289510_40	UniRef90_A0A2Z4QA17	268.0	0	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-1289510_40	1235797.C816_04180	289.0	0	N/A	N/A
structural_annotation	UHGV-1289510_40	PF21683,TIGR02126,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_41	phrog_1194	87.7	1.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-1289510_41	1232443.BAIA02000078_gene17	149.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-1289510_41	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_42	phrog_1535	125.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1289510_42	UniRef90_A0A810PX76	108.0	1.38e-20	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1289510_42	1235797.C816_04182	206.0	0	SLT domain	N/A
COG	UHGV-1289510_42	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1289510_42	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_43	phrog_806	79.9	4.1e-23	N/A	unknown function
UniRef90	UHGV-1289510_43	UniRef90_A0A6N9P7A4	226.0	0	N/A	N/A
eggNOG-mapper	UHGV-1289510_43	397290.C810_05150	143.0	2.56e-40	N/A	N/A
Pfam	UHGV-1289510_43	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1289510_43	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-1289510_43	PF11611,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_44	phrog_706	113.3	2.2e-33	N/A	unknown function
UniRef90	UHGV-1289510_44	UniRef90_A0A2U1BEN4	290.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1289510_44	693746.OBV_18170	185.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1289510_44	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1289510_44	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_45	phrog_11299	83.6	2.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-1289510_45	693746.OBV_18160	179.0	0	N/A	N/A
structural_annotation	UHGV-1289510_45	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_46	phrog_3099	107.1	1.8e-31	N/A	unknown function
eggNOG-mapper	UHGV-1289510_46	1232443.BAIA02000078_gene23	267.0	0	N/A	N/A
structural_annotation	UHGV-1289510_46	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-1289510_47	K07741	116.1	7.6e-34	antB; anti-repressor protein	N/A
PHROG	UHGV-1289510_47	phrog_5817	125.5	4.9e-37	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1289510_47	UniRef90_A0A1C6J9I6	422.0	0	Phage anti-repressor protein	N/A
eggNOG-mapper	UHGV-1289510_47	1347392.CCEZ01000060_gene3263	154.0	4.90454e-44	AntA/AntB antirepressor	N/A
Pfam	UHGV-1289510_47	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-1289510_47	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1289510_47	PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_48	phrog_3266	59.8	4.5e-17	tail completion	connector
eggNOG-mapper	UHGV-1289510_48	1232443.BAIA02000078_gene24	238.0	0	N/A	N/A
structural_annotation	UHGV-1289510_48	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-1289510_49	UniRef90_A0A2U1BEM0	152.0	2.8026e-45	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1289510_49	1226322.HMPREF1545_00054	135.0	4.03e-39	Minor capsid protein	N/A
Pfam	UHGV-1289510_49	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1289510_49	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_50	phrog_3366	102.0	4.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-1289510_50	1226322.HMPREF1545_00053	209.0	0	N/A	N/A
structural_annotation	UHGV-1289510_50	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1289510_51	phrog_541	94.1	1.1e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-1289510_51	1120998.AUFC01000030_gene2237	66.6	0.00000000000253	N/A	N/A
eggNOG-mapper	UHGV-1289510_52	1232443.BAIA02000078_gene29	105.0	4.01e-26	Phage major capsid protein E	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1289510	Yes	29,263	43	68	1
UHGV-1311920	No	28,543	44	66	1
UHGV-1311079	No	16,622	41	40	1
UHGV-1321421	No	15,137	41	37	1