vOTU vOTU-020933

vOTU: vOTU-020933

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-020933
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00087 → vSUBFAM-03077 → vOTU-020933
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → UBA1685 → UBA1685 sp002320595
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0042426
Biosample ID	SAMEA2042628
Genome length (bp)	28,982 bps
CheckV completeness	76.24% (Medium-quality)
CDS count	44
CDS density	94.99%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → UBA1685 → UBA1685 sp002320595	Total connections	71	Host agreement	98.59
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → UBA1685 → UBA1685 sp002320595	Total connections	27	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 76.24)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0042426_1	1232449.BAHV02000016_gene1815	64.3	0.00000000434	N/A	N/A
PHROG	UHGV-0042426_2	phrog_22978	118.4	4.39994e-41	N/A	unknown function
eggNOG-mapper	UHGV-0042426_2	1408437.JNJN01000039_gene389	532.0	0	heme binding	N/A
COG	UHGV-0042426_2	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
Pfam	UHGV-0042426_3	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
PHROG	UHGV-0042426_5	phrog_3287	187.6	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0042426_5	1232449.BAHV02000016_gene1816	459.0	0	N/A	N/A
structural_annotation	UHGV-0042426_5	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0042426_6	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0042426_7	phrog_422	90.8	1.6e-26	major head protein	head and packaging
UniRef90	UHGV-0042426_7	UniRef90_UPI001D089F97	226.0	0	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0042426_7	1408437.JNJN01000001_gene1710	224.0	0	N/A	N/A
Pfam	UHGV-0042426_7	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0042426_7	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0042426_8	755731.Clo1100_2435	87.8	2.82e-17	N/A	N/A
PHROG	UHGV-0042426_9	phrog_156	115.7	9.5e-36	portal protein	head and packaging
eggNOG-mapper	UHGV-0042426_9	1408437.JNJN01000001_gene1708	404.0	0	N/A	N/A
structural_annotation	UHGV-0042426_9	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0042426_11	K06909	124.3	1.3e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0042426_11	phrog_979	172.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0042426_11	UniRef90_A0A8F2F0S5	537.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0042426_11	1232449.BAHV02000016_gene1824	435.0	0	N/A	N/A
Pfam	UHGV-0042426_11	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0042426_11	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0042426_11	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0042426_12	phrog_309	98.1	7.7e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0042426_12	UniRef90_A0A0K1LMB1	108.0	8.01e-27	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0042426_12	1567014.A0A0A7RTX1_9VIRU	77.8	0.00000000000000141	N/A	N/A
Pfam	UHGV-0042426_12	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
KOfam	UHGV-0042426_13	K07339	45.7	0.0000000000011	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-0042426_13	phrog_353	48.9	0.000000000000089	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0042426_13	UniRef90_R5B4D7	115.0	1.41e-32	YcfA family protein	N/A
eggNOG-mapper	UHGV-0042426_13	1209989.TepiRe1_1141	76.3	6.16e-18	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0042426_13	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
structural_annotation	UHGV-0042426_13	PF07927	N/A	N/A	N/A	N/A
KOfam	UHGV-0042426_14	K18843	54.5	0.0000000000000026	hicB; antitoxin HicB	N/A
PHROG	UHGV-0042426_14	phrog_497	72.3	9.4e-21	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0042426_14	UniRef90_R9L6A1	165.0	0	HicB-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0042426_14	1235835.C814_03459	165.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0042426_14	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0042426_14	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0042426_14	PF15919,COG1598	N/A	N/A	N/A	N/A
PHROG	UHGV-0042426_15	phrog_31049	130.1	1.2e-38	N/A	unknown function
eggNOG-mapper	UHGV-0042426_15	431943.CKL_4074	122.0	1.47e-33	N/A	N/A
structural_annotation	UHGV-0042426_15	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0042426_16	phrog_3584	206.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0042426_16	UniRef90_I2E8X7	135.0	5.26e-35	Gp31	N/A
eggNOG-mapper	UHGV-0042426_16	411468.CLOSCI_00558	129.0	2.94e-32	N/A	N/A
structural_annotation	UHGV-0042426_16	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0042426_22	K19779	43.9	0.0000000000035	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0042426_22	phrog_599	55.9	0.000000000000001	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0042426_22	UniRef90_A0A7X2XHM6	51.6	0.000000251	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0042426_22	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0042426_22	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0042426_22	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0042426_22	PF14354,NF007260	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0042426_25	PF21805	N/A	N/A	N/A	N/A
PHROG	UHGV-0042426_26	phrog_2118	104.7	1e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0042426_26	UniRef90_UPI00030ECFE8	140.0	1.51e-40	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0042426_26	1007096.BAGW01000031_gene126	140.0	2.53999e-41	HNH endonuclease	N/A
Pfam	UHGV-0042426_26	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0042426_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0042426_26	COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0042426_30	phrog_5781	70.3	3.3e-21	N/A	unknown function
UniRef90	UHGV-0042426_30	UniRef90_UPI000C7C87D9	97.1	1.26e-23	N/A	N/A
eggNOG-mapper	UHGV-0042426_30	573061.Clocel_3558	97.4	1.22e-24	N/A	N/A
Pfam	UHGV-0042426_30	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0042426_30	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0042426_30	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0042426_33	phrog_24368	48.2	0.00000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0042426_33	742740.HMPREF9474_04313	54.7	0.00000026	N/A	N/A
PHROG	UHGV-0042426_36	phrog_7566	93.8	1.1e-27	N/A	unknown function
UniRef90	UHGV-0042426_36	UniRef90_UPI001CD6F8EA	64.3	0.0000000000243	phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0042426_36	411459.RUMOBE_00948	74.3	8.64e-16	N/A	N/A
Pfam	UHGV-0042426_37	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0042426_37	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0042426_37	PF05339,TIGR00673,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0042426_43	UniRef90_UPI0012B58364	47.0	0.00000711	Arc family DNA-binding protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0042426	Yes	28,982	54	76	1
UHGV-1442962	No	28,982	54	76	1
UHGV-1407526	No	28,774	54	76	1
UHGV-1377784	No	22,115	55	57	1
UHGV-1801553	No	12,902	53	31	1