vOTU vOTU-021718

vOTU: vOTU-021718

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-021718
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vOTU-021718
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Frisingicoccus → Frisingicoccus caecimuris
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1928029
Biosample ID	N/A
Genome length (bp)	34,493 bps
CheckV completeness	82.18% (Medium-quality)
CDS count	43
CDS density	92.45%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter lactaris	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Frisingicoccus → Frisingicoccus caecimuris	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 82.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1928029_1	phrog_119	60.2	3.1e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1928029_1	UniRef90_A0A414B846	172.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1928029_1	999413.HMPREF1094_02014	166.0	0	HNH nucleases	N/A
COG	UHGV-1928029_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1928029_1	TIGR02646	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_2	phrog_36	58.6	1.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1928029_2	UniRef90_A0A174WV03	166.0	0	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	N/A
eggNOG-mapper	UHGV-1928029_2	97138.C820_00772	109.0	1.01e-28	sigma factor activity	N/A
COG	UHGV-1928029_2	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1928029_2	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_3	phrog_7024	97.1	9e-29	N/A	unknown function
eggNOG-mapper	UHGV-1928029_3	1286171.EAL2_c05240	79.0	2.34e-18	N/A	N/A
AcrCatalog	UHGV-1928029_3	cluster_1398	89.7	2.95e-27	NA	N/A
PHROG	UHGV-1928029_4	phrog_2717	42.9	0.000000000008	N/A	unknown function
eggNOG-mapper	UHGV-1928029_4	476272.RUMHYD_02840	155.0	0	N/A	N/A
structural_annotation	UHGV-1928029_4	PF19962,COG1579	N/A	N/A	N/A	N/A
UniRef90	UHGV-1928029_6	UniRef90_UPI000E4C0B2A	112.0	6.44e-30	N/A	N/A
KOfam	UHGV-1928029_8	K14440	118.6	9.7e-36	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1928029_8	phrog_62	416.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1928029_8	UniRef90_A0A4R2LL80	927.0	0	Helicase-like protein	N/A
eggNOG-mapper	UHGV-1928029_8	1235799.C818_04202	822.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-1928029_8	DpdE_00010	96.2	4.1e-28	DpdE	DPD
Pfam	UHGV-1928029_8	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1928029_8	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1928029_8	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1928029_8	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_9	phrog_93	64.0	2.3e-18	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1928029_9	UniRef90_A0A2V2D4L8	200.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1928029_9	1235799.C818_04201	160.0	0	VRR_NUC	N/A
Pfam	UHGV-1928029_9	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1928029_9	PF01974,MF_01490,NF011269	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_10	phrog_256	1040.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1928029_10	UniRef90_A0A2V2D2X6	1601.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-1928029_10	1235799.C818_04200	1210.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-1928029_10	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-1928029_10	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-1928029_10	PF05272,NF011296,NF040562,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-1928029_11	K02334	842.8	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-1928029_11	phrog_17	378.5	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1928029_11	UniRef90_A0A2V2D359	1269.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-1928029_11	1235799.C818_04199	1011.0	0	DNA polymerase A domain	N/A
Pfam	UHGV-1928029_11	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-1928029_11	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-1928029_11	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_12	phrog_112	197.1	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1928029_12	UniRef90_A0A2V2CXC8	425.0	0	N/A	N/A
eggNOG-mapper	UHGV-1928029_12	1235799.C818_04198	318.0	0	N/A	N/A
Pfam	UHGV-1928029_12	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-1928029_12	PF10991,MF_04153,NF005241	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_13	phrog_69	327.5	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1928029_13	UniRef90_UPI00082E7F29	579.0	0	N/A	N/A
eggNOG-mapper	UHGV-1928029_13	1235799.C818_04197	501.0	0	N/A	N/A
Pfam	UHGV-1928029_13	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-1928029_13	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-1928029_13	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_14	phrog_22695	87.6	1.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-1928029_14	1235799.C818_04196	80.9	1.81e-17	N/A	N/A
PHROG	UHGV-1928029_16	phrog_27197	69.9	3.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-1928029_16	394503.Ccel_3068	73.2	0.00000000000000251	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1928029_16	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
UniRef90	UHGV-1928029_18	UniRef90_UPI001C033D96	63.5	0.0000000000191	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1928029_18	PF13443,MF_00535,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1928029_21	UniRef90_A0A1Y4RCY6	117.0	3.93e-33	N/A	N/A
eggNOG-mapper	UHGV-1928029_21	1121335.Clst_0370	100.0	2.4e-27	N/A	N/A
structural_annotation	UHGV-1928029_21	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1928029_22	K01356	130.1	2.7e-38	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1928029_22	phrog_4	124.1	1.3e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-1928029_22	UniRef90_A0A316PVY5	265.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1928029_22	1121423.JONT01000002_gene2372	187.0	0	Peptidase S24-like	N/A
Pfam	UHGV-1928029_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1928029_22	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1928029_22	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1928029_22	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_23	phrog_34415	147.1	1.20512e-43	N/A	unknown function
UniRef90	UHGV-1928029_23	UniRef90_UPI00195F6C5D	224.0	0	FxLYD domain-containing protein	N/A
eggNOG-mapper	UHGV-1928029_23	1158607.UAU_02468	148.0	9.99995e-41	N/A	N/A
NCBIFam	UHGV-1928029_23	NF038353.1	N/A	N/A	FxLYD domain-containing protein	N/A
KOfam	UHGV-1928029_24	K14059	173.2	0	int; integrase	N/A
PHROG	UHGV-1928029_24	phrog_1	164.3	0	integrase	integration and excision
UniRef90	UHGV-1928029_24	UniRef90_A0A4R2LGG7	692.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1928029_24	1304866.K413DRAFT_3002	358.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1928029_24	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1928029_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1928029_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1928029_24	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1928029_25	K01448	142.3	4.60046e-42	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1928029_25	phrog_435	158.6	0	endolysin	lysis
UniRef90	UHGV-1928029_25	UniRef90_A0A4R2LL56	691.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1928029_25	483218.BACPEC_01123	146.0	1.97e-38	Sporulation related domain	N/A
Pfam	UHGV-1928029_25	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1928029_25	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1928029_25	PF01520,MF_00562,TIGR02883,COG0860,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_26	phrog_199	63.9	2.1e-18	holin	lysis
UniRef90	UHGV-1928029_26	UniRef90_A0A7M2RJZ1	217.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-1928029_26	428126.CLOSPI_02191	166.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1928029_26	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1928029_26	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1928029_26	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_27	phrog_7121	112.5	2.8e-33	tail fiber protein	tail
UniRef90	UHGV-1928029_27	UniRef90_A0A0M2NHB1	145.0	1.78e-36	Neck appendage protein	N/A
eggNOG-mapper	UHGV-1928029_27	428125.CLOLEP_00172	138.0	1.49e-33	COG COG5295 Autotransporter adhesin	N/A
Pfam	UHGV-1928029_27	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
PHROG	UHGV-1928029_28	phrog_21765	40.5	0.000000000019	N/A	unknown function
eggNOG-mapper	UHGV-1928029_28	1235798.C817_04596	120.0	5.37e-28	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-1928029_28	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-1928029_29	phrog_11037	103.0	4.1e-30	N/A	unknown function
UniRef90	UHGV-1928029_29	UniRef90_UPI0018A8CA3B	99.4	6.88e-20	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-1928029_29	1235796.C815_01287	114.0	8.55e-26	pathogenesis	N/A
Pfam	UHGV-1928029_29	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-1928029_29	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1928029_29	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-1928029_29	PF18013,PF00877,NF006360,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_30	phrog_13289	424.1	0	tail protein	tail
UniRef90	UHGV-1928029_30	UniRef90_A0A844KBR1	685.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1928029_30	1235798.C817_02568	480.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1928029_30	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1928029_30	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1928029_30	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-1928029_30	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_31	phrog_33	89.9	4.8e-26	distal tail protein Dit	tail
UniRef90	UHGV-1928029_31	UniRef90_A0A3R6C171	258.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1928029_31	1235798.C817_04593	240.0	0	phage tail	N/A
NCBIFam	UHGV-1928029_31	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1928029_31	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1928029_31	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_32	phrog_23464	245.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1928029_32	1232446.BAIE02000002_gene834	291.0	0	tape measure	N/A
COG	UHGV-1928029_32	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
eggNOG-mapper	UHGV-1928029_33	1235798.C817_04591	155.0	0	N/A	N/A
structural_annotation	UHGV-1928029_33	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_34	phrog_88	76.2	4.7e-22	major tail protein	tail
UniRef90	UHGV-1928029_34	UniRef90_A0A3R6A072	228.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1928029_34	33035.JPJF01000039_gene278	170.0	0	N/A	N/A
structural_annotation	UHGV-1928029_34	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_35	phrog_5	43.5	0.0000000000067	tail completion or Neck1 protein	connector
UniRef90	UHGV-1928029_35	UniRef90_R6FMT8	171.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1928029_35	1235798.C817_04589	202.0	0	N/A	N/A
structural_annotation	UHGV-1928029_35	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1928029_36	1235798.C817_04588	127.0	4.04e-37	N/A	N/A
structural_annotation	UHGV-1928029_36	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_37	phrog_19734	111.8	4.6e-33	N/A	unknown function
UniRef90	UHGV-1928029_37	UniRef90_A0A3R6AW46	176.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1928029_37	1235798.C817_04587	171.0	0	N/A	N/A
structural_annotation	UHGV-1928029_37	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_38	phrog_2550	74.3	9.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-1928029_38	1235798.C817_04586	114.0	8e-32	N/A	N/A
structural_annotation	UHGV-1928029_38	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_39	phrog_10	192.9	0	major head protein	head and packaging
UniRef90	UHGV-1928029_39	UniRef90_A0A143XZI6	499.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-1928029_39	1235798.C817_04585	395.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1928029_39	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1928029_39	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1928029_39	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1928029_39	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1928029_40	K06904	159.1	0	N/A	N/A
PHROG	UHGV-1928029_40	phrog_80	178.3	0	head maturation protease	head and packaging
UniRef90	UHGV-1928029_40	UniRef90_R9MV12	284.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1928029_40	1235798.C817_04584	284.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1928029_40	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1928029_40	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1928029_40	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1928029_40	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_41	phrog_12	170.8	0	portal protein	head and packaging
UniRef90	UHGV-1928029_41	UniRef90_A0A412UTF1	622.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1928029_41	1235798.C817_04583	617.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1928029_41	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1928029_41	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1928029_41	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1928029_41	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_42	phrog_9	285.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1928029_42	UniRef90_A0A3R6E565	897.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1928029_42	1235798.C817_04582	936.0	0	Phage Terminase	N/A
Pfam	UHGV-1928029_42	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1928029_42	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1928029_42	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1928029_42	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1928029_43	phrog_361	96.4	2.4e-28	terminase small subunit	head and packaging
UniRef90	UHGV-1928029_43	UniRef90_A0A1Y4FAU6	187.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1928029_43	1235798.C817_04581	205.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-1928029_43	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1928029_43	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1928029	Yes	34,493	44	82	1
UHGV-0203179	No	34,466	44	82	1
UHGV-2215796	No	22,736	42	64	1
UHGV-0062493	No	14,961	46	33	1
UHGV-2238211	No	11,633	48	26	1