vOTU vOTU-021808

vOTU: vOTU-021808

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-021808
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-05885 → vGENUS-13760 → vOTU-021808
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus → Ruminococcus sp900540005
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2073934
Biosample ID	SAMN05971693
Genome length (bp)	29,659 bps
CheckV completeness	83.76% (Medium-quality)
CDS count	45
CDS density	93.35%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus → Ruminococcus sp900540005	Total connections	22	Host agreement	90.91
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus → Ruminococcus sp900540005	Total connections	23	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 83.76)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2073934_2	phrog_1194	47.3	0.00000000000033	N/A	unknown function
structural_annotation	UHGV-2073934_2	PF20458,TIGR01633,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_3	phrog_1535	582.3	0	tail length tape measure protein	tail
UniRef90	UHGV-2073934_3	UniRef90_W0U887	561.0	0	Putative minor tail protein	N/A
eggNOG-mapper	UHGV-2073934_3	1160721.RBI_II00528	561.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-2073934_3	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-2073934_3	PF20155,TIGR01760,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_4	phrog_706	118.2	6.4e-35	N/A	unknown function
UniRef90	UHGV-2073934_4	UniRef90_UPI000F54B7AC	184.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2073934_4	1160721.RBI_II00530	172.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2073934_4	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2073934_4	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_5	phrog_11299	104.8	7.4e-31	N/A	unknown function
structural_annotation	UHGV-2073934_5	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_6	phrog_3099	127.5	8.8e-38	N/A	unknown function
eggNOG-mapper	UHGV-2073934_6	1160721.RBI_II00532	202.0	0	N/A	N/A
PHROG	UHGV-2073934_7	phrog_3266	103.3	1.7e-30	tail completion	connector
eggNOG-mapper	UHGV-2073934_7	1449050.JNLE01000003_gene3885	118.0	4.98e-32	N/A	N/A
structural_annotation	UHGV-2073934_7	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_8	phrog_556	58.7	9.9e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-2073934_8	883114.HMPREF9709_01190	60.1	0.000000000652	Minor capsid protein	N/A
structural_annotation	UHGV-2073934_8	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2073934_9	873448.STRPO_0288	67.0	0.00000000000828	N/A	N/A
PHROG	UHGV-2073934_10	phrog_137	60.1	3.1e-17	head-tail adaptor Ad1	connector
UniRef90	UHGV-2073934_10	UniRef90_R6C7E8	136.0	6.5e-39	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-2073934_10	157924.Q7Y4I2_9CAUD	90.9	1e-21	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-2073934_10	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-2073934_10	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_11	phrog_267	64.5	1.4e-18	major head protein	head and packaging
UniRef90	UHGV-2073934_11	UniRef90_A0A1C6GMA6	424.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-2073934_11	718252.FP2_06660	271.0	0	N/A	N/A
structural_annotation	UHGV-2073934_11	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_12	phrog_233	81.3	2e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-2073934_12	UniRef90_UPI001BAB5DF5	85.1	3.91e-18	N/A	N/A
eggNOG-mapper	UHGV-2073934_12	1423775.BAMN01000011_gene605	78.2	3.39e-16	N/A	N/A
Pfam	UHGV-2073934_12	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-2073934_12	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_13	phrog_17688	344.1	0	N/A	unknown function
UniRef90	UHGV-2073934_13	UniRef90_A0A011V4Z3	734.0	0	Terminase	N/A
eggNOG-mapper	UHGV-2073934_13	1280698.AUJS01000007_gene1036	538.0	0	phage terminase, large subunit	N/A
COG	UHGV-2073934_13	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2073934_13	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_14	phrog_338	94.3	1.6e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2073934_14	UniRef90_A0A011WMC8	196.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2073934_14	936375.HMPREF1152_0672	171.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-2073934_14	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2073934_14	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-2073934_14	PF01844,COG1403	N/A	N/A	N/A	N/A
UniRef90	UHGV-2073934_15	UniRef90_UPI0019572D92	68.6	0.000000000000139	N/A	N/A
eggNOG-mapper	UHGV-2073934_15	1256908.HMPREF0373_00479	68.2	0.0000000000000331	N/A	N/A
UniRef90	UHGV-2073934_16	UniRef90_F7V703	59.3	0.000000000228	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit	N/A
eggNOG-mapper	UHGV-2073934_17	1384065.JAGS01000001_gene524	92.8	1.59e-20	N/A	N/A
COG	UHGV-2073934_17	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
PHROG	UHGV-2073934_18	phrog_104	256.9	0	portal protein	head and packaging
UniRef90	UHGV-2073934_18	UniRef90_A0A373V3S0	476.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2073934_18	665950.HMPREF1025_02537	430.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-2073934_18	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_19	phrog_36	56.3	6e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-2073934_19	UniRef90_UPI0005D1DECF	63.5	0.000000000451	N/A	N/A
eggNOG-mapper	UHGV-2073934_19	1410624.JNKK01000017_gene1964	54.7	0.000000198	sigma factor activity	N/A
COG	UHGV-2073934_19	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-2073934_19	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_23	phrog_599	41.1	0.000000000035	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2073934_23	UniRef90_A0A3A6JJS1	145.0	9.52883e-44	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-2073934_23	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-2073934_23	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-2073934_23	TIGR03655	N/A	N/A	N/A	N/A
KOfam	UHGV-2073934_28	K06919	105.5	5e-31	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-2073934_28	phrog_1829	817.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2073934_28	UniRef90_A0A348ZC79	932.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-2073934_28	1410670.JHXF01000015_gene2274	882.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-2073934_28	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-2073934_28	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-2073934_28	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-2073934_28	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-2073934_28	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-2073934_28	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_29	phrog_378	118.9	4.1e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2073934_29	UniRef90_UPI0006852132	221.0	0	N/A	N/A
eggNOG-mapper	UHGV-2073934_29	1410670.JHXF01000015_gene2272	221.0	0	N/A	N/A
Pfam	UHGV-2073934_29	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-2073934_29	PF05037,NF004948	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_30	phrog_5702	79.6	1.6e-23	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2073934_30	UniRef90_UPI000A4B1865	163.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-2073934_30	1410670.JHXF01000015_gene2271	163.0	0	VRR_NUC	N/A
Pfam	UHGV-2073934_30	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-2073934_30	PF01870,MF_00130,NF002581,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-2073934_31	K19789	316.6	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-2073934_31	phrog_16	273.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2073934_31	UniRef90_A0A356CZA9	580.0	0	Helicase	N/A
eggNOG-mapper	UHGV-2073934_31	1410670.JHXF01000015_gene2270	554.0	0	helicase	N/A
PADLOC	UHGV-2073934_31	mREase_IV_00005	114.3	7.3e-35	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-2073934_31	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2073934_31	PF18766	N/A	N/A	SWI2/SNF2 ATPase	SWI2_SNF2
Pfam	UHGV-2073934_31	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2073934_31	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-2073934_31	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_32	phrog_2872	256.5	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2073934_32	UniRef90_UPI001A9B3ECC	365.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-2073934_32	754027.HMPREF9554_00709	219.0	0	N/A	N/A
Pfam	UHGV-2073934_32	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-2073934_32	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_33	phrog_253	111.2	1.7e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2073934_33	UniRef90_UPI0019171ADA	159.0	1.4013e-45	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-2073934_33	632292.Calhy_0748	66.6	0.0000000000306	Siphovirus Gp157	N/A
Pfam	UHGV-2073934_33	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-2073934_33	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_34	phrog_15609	93.0	1.8e-27	N/A	unknown function
UniRef90	UHGV-2073934_34	UniRef90_A0A373VML2	272.0	0	N/A	N/A
eggNOG-mapper	UHGV-2073934_34	641112.ACOK01000073_gene2872	92.8	3.84e-19	N/A	N/A
Pfam	UHGV-2073934_34	PF11300	N/A	N/A	N/A	DUF3102
structural_annotation	UHGV-2073934_34	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_36	phrog_8470	239.6	0	N/A	unknown function
UniRef90	UHGV-2073934_36	UniRef90_UPI0019175B9C	322.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-2073934_36	641112.ACOK01000073_gene2870	438.0	0	PcfJ-like protein	N/A
Pfam	UHGV-2073934_36	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-2073934_36	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_37	phrog_38338	56.7	4.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-2073934_37	1514668.JOOA01000001_gene227	90.1	1.7e-21	N/A	N/A
structural_annotation	UHGV-2073934_40	PF10743	N/A	N/A	N/A	N/A
PHROG	UHGV-2073934_41	phrog_4583	40.9	0.000000000022	transcriptional repressor	transcription regulation
UniRef90	UHGV-2073934_41	UniRef90_R6R5I8	90.5	2.28e-22	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2073934_41	1033744.CAEL01000029_gene1308	47.4	0.00000411	N/A	N/A
Pfam	UHGV-2073934_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2073934_41	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2073934_42	K01356	126.7	2.3e-37	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-2073934_42	phrog_4	145.2	4.80645e-43	transcriptional repressor	transcription regulation
UniRef90	UHGV-2073934_42	UniRef90_E9SCJ6	172.0	0	Peptidase S24-like protein	N/A
eggNOG-mapper	UHGV-2073934_42	246199.CUS_5911	172.0	0	N/A	N/A
Pfam	UHGV-2073934_42	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-2073934_42	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-2073934_42	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2073934_42	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2073934_44	1410670.JHXF01000019_gene65	238.0	0	N/A	N/A
KOfam	UHGV-2073934_45	K14059	261.3	0	int; integrase	N/A
PHROG	UHGV-2073934_45	phrog_1	233.1	0	integrase	integration and excision
UniRef90	UHGV-2073934_45	UniRef90_A0A1C6EL66	438.0	0	Integrase	N/A
eggNOG-mapper	UHGV-2073934_45	1203606.HMPREF1526_02099	251.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2073934_45	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-2073934_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2073934_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2073934_45	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2073934	Yes	29,659	45	84	1
UHGV-0139993	No	20,114	45	57	1
UHGV-2077414	No	11,672	44	31	1
UHGV-2071725	No	10,999	44	29	1