vOTU vOTU-021929

vOTU: vOTU-021929

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-021929
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00040 → vGENUS-00013 → vOTU-021929
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1383069
Biosample ID	SAMN05194733
Genome length (bp)	41,040 bps
CheckV completeness	71.17% (Medium-quality)
CDS count	68
CDS density	93.80%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis	Total connections	1465	Host agreement	74.81
PHIST-predicted host lineage	Bacteria → Firmicutes_A	Total connections	43	Host agreement	69.77

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 71.17)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1383069_1	phrog_38	145.3	3.9937e-43	terminase large subunit	head and packaging
UniRef90	UHGV-1383069_1	UniRef90_A0A8D9PG33	715.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1383069_1	1232453.BAIF02000058_gene1623	424.0	0	TIGRFAM Phage	N/A
COG	UHGV-1383069_1	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1383069_1	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1383069_2	phrog_36	67.5	2.6e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1383069_2	UniRef90_A0A410QFZ6	86.7	5.36e-19	N/A	N/A
eggNOG-mapper	UHGV-1383069_2	1121289.JHVL01000007_gene2767	79.7	4.59e-17	sigma factor activity	N/A
COG	UHGV-1383069_2	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1383069_2	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1383069_3	phrog_64	172.9	0	portal protein	head and packaging
UniRef90	UHGV-1383069_3	UniRef90_A0A173UGW9	959.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-1383069_3	1298920.KI911353_gene2663	453.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1383069_3	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1383069_3	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1383069_4	UniRef90_R6C0B6	174.0	0	Phage capsid scaffolding protein	N/A
PHROG	UHGV-1383069_5	phrog_909	51.2	0.00000000000002	major head protein	head and packaging
eggNOG-mapper	UHGV-1383069_5	1298920.KI911353_gene2661	124.0	1.62e-35	N/A	N/A
PHROG	UHGV-1383069_6	phrog_29	162.9	0	major head protein	head and packaging
UniRef90	UHGV-1383069_6	UniRef90_UPI001D02C54B	691.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1383069_6	1298920.KI911353_gene2660	343.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1383069_6	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1383069_6	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1383069_7	UniRef90_A0A416G2T8	62.4	0.0000000000435	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-1383069_7	PF21169	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1383069_8	397290.C810_01402	63.5	0.0000000000255	N/A	N/A
PHROG	UHGV-1383069_9	phrog_1048	125.5	6.1e-38	N/A	unknown function
UniRef90	UHGV-1383069_9	UniRef90_A0A352P8A0	268.0	0	N/A	N/A
eggNOG-mapper	UHGV-1383069_9	457412.RSAG_01107	215.0	0	N/A	N/A
Pfam	UHGV-1383069_9	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1383069_9	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1383069_9	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1383069_10	phrog_4105	83.6	1.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-1383069_10	411459.RUMOBE_00911	156.0	0	N/A	N/A
PHROG	UHGV-1383069_11	phrog_443	54.8	0.0000000000000028	holin	lysis
UniRef90	UHGV-1383069_11	UniRef90_UPI000BA3B743	98.6	9.63e-26	holin	N/A
eggNOG-mapper	UHGV-1383069_11	411490.ANACAC_00704	87.8	2.78e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1383069_11	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1383069_11	PF16945	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1383069_12	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1383069_13	1298920.KI911353_gene2654	172.0	0	N/A	N/A
AcrCatalog	UHGV-1383069_13	cluster_24841	93.2	7.4e-26	NA	N/A
structural_annotation	UHGV-1383069_14	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-1383069_15	UniRef90_A0A8D9PGN2	182.0	0	Major tail protein	N/A
structural_annotation	UHGV-1383069_15	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1383069_18	phrog_14030	132.6	2.5e-39	N/A	unknown function
UniRef90	UHGV-1383069_18	UniRef90_A0A3R6ARM6	207.0	0	Peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-1383069_18	1235793.C809_02691	169.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-1383069_18	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
PHROG	UHGV-1383069_19	phrog_1535	258.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1383069_19	UniRef90_A0A173UHS1	1067.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1383069_19	1232443.BAIA02000078_gene18	208.0	0	phage tail tape measure protein	N/A
COG	UHGV-1383069_19	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1383069_19	PF20155,MF_04138	N/A	N/A	N/A	N/A
UniRef90	UHGV-1383069_20	UniRef90_A0A173UG14	575.0	0	BIG2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1383069_20	1410624.JNKK01000088_gene2110	68.9	0.000000000113	Bacterial Ig-like domain (group 2)	N/A
structural_annotation	UHGV-1383069_20	PF02368,PF07233,NF038353,NF005261	N/A	N/A	N/A	N/A
PHROG	UHGV-1383069_21	phrog_130	145.7	2.10195e-43	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1383069_21	UniRef90_A0A1I0BKG6	295.0	0	BRO family, N-terminal domain	N/A
eggNOG-mapper	UHGV-1383069_21	1443125.Z962_p0009	203.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1383069_21	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1383069_21	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1383069_21	PF02498,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1383069_22	phrog_1194	46.1	0.0000000000007	N/A	unknown function
Pfam	UHGV-1383069_22	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1383069_22	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1383069_23	phrog_18190	482.9	0	N/A	unknown function
UniRef90	UHGV-1383069_23	UniRef90_A0A173UFM3	943.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1383069_23	397290.C810_05239	298.0	0	N/A	N/A
Pfam	UHGV-1383069_23	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1383069_23	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1383069_24	phrog_17196	137.4	7.79963e-42	kinase	other
eggNOG-mapper	UHGV-1383069_24	483218.BACPEC_01141	191.0	0	N/A	N/A
structural_annotation	UHGV-1383069_24	PF19537,PF13619,COG3536	N/A	N/A	N/A	N/A
COG	UHGV-1383069_25	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-1383069_25	PF02839	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1383069_27	1232452.BAIB02000007_gene1607	78.2	1.02e-16	N/A	N/A
NCBIFam	UHGV-1383069_28	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1383069_28	NF040910	N/A	N/A	N/A	N/A
KOfam	UHGV-1383069_30	K18830	53.9	0.0000000000000037	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1383069_30	phrog_2967	53.9	0.0000000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-1383069_30	UniRef90_A0A173RCH7	235.0	0	Putative zinc finger/helix-turn-helix protein, YgiT family	N/A
eggNOG-mapper	UHGV-1383069_30	1235790.C805_00012	112.0	1.4e-30	Helix-turn-helix domain	N/A
Pfam	UHGV-1383069_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1383069_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1383069_30	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1383069_31	phrog_32192	43.8	0.0000000000035	N/A	unknown function
UniRef90	UHGV-1383069_31	UniRef90_UPI001D0221FF	142.0	6.75986e-42	alanine-zipper protein	N/A
PHROG	UHGV-1383069_36	phrog_26861	88.0	2.1e-26	N/A	unknown function
UniRef90	UHGV-1383069_36	UniRef90_A0A173RCS5	334.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1383069_36	483218.BACPEC_01931	107.0	3.01e-26	Single-strand binding protein family	N/A
Pfam	UHGV-1383069_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1383069_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1383069_36	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1383069_38	K03546	49.7	0.000000000000016	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1383069_38	phrog_77	138.3	5.90003e-41	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1383069_38	UniRef90_A0A174JMG0	466.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-1383069_38	1232453.BAIF02000057_gene1134	503.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1383069_38	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1383069_38	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1383069_39	phrog_19610	98.4	5.8e-29	N/A	unknown function
eggNOG-mapper	UHGV-1383069_41	1232453.BAIF02000057_gene1135	75.5	0.00000000000000263	N/A	N/A
PHROG	UHGV-1383069_43	phrog_2185	322.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1383069_43	UniRef90_UPI00189B4EB8	420.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1383069_43	658655.HMPREF0988_00886	477.0	0	N/A	N/A
Pfam	UHGV-1383069_43	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-1383069_43	NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1383069_44	phrog_25456	85.5	3.5e-25	N/A	unknown function
KOfam	UHGV-1383069_46	K06167	71.5	1.2e-20	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1383069_46	phrog_392	199.0	0	metal-dependent hydrolase	other
UniRef90	UHGV-1383069_46	UniRef90_A0A173REW9	497.0	0	Beta-lactamase superfamily domain	N/A
eggNOG-mapper	UHGV-1383069_46	1144313.PMI10_00501	179.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1383069_46	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1383069_46	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1383069_46	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1383069_48	phrog_19106	308.6	0	N/A	unknown function
UniRef90	UHGV-1383069_48	UniRef90_A0A173RDE6	348.0	0	Group I intron endonuclease	N/A
eggNOG-mapper	UHGV-1383069_48	658655.HMPREF0988_00875	263.0	0	N/A	N/A
Pfam	UHGV-1383069_48	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
structural_annotation	UHGV-1383069_48	TIGR01453	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1383069_52	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-1383069_53	phrog_11769	193.4	0	N/A	unknown function
UniRef90	UHGV-1383069_53	UniRef90_A0A173RDT0	494.0	0	Phage replisome organizer, putative, N-terminal region	N/A
eggNOG-mapper	UHGV-1383069_53	536232.CLM_1634	188.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-1383069_53	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1383069_53	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-1383069_53	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-1383069_54	K02314	307.8	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1383069_54	phrog_19	288.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1383069_54	UniRef90_A0A173RD23	838.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1383069_54	1298920.KI911353_gene2061	364.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1383069_54	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1383069_54	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1383069_54	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1383069_54	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1383069_58	phrog_21026	53.8	0.0000000000000031	N/A	unknown function
eggNOG-mapper	UHGV-1383069_61	397290.C810_01492	52.8	0.00000298	N/A	N/A
PHROG	UHGV-1383069_63	phrog_8684	86.4	2.1e-26	N/A	unknown function
UniRef90	UHGV-1383069_63	UniRef90_A0A173RDP8	290.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-1383069_63	742735.HMPREF9467_00920	78.6	1.11e-16	YopX protein	N/A
Pfam	UHGV-1383069_63	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1383069_63	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1383069_63	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1383069_64	397290.C810_05186	101.0	2.92e-26	N/A	N/A
PHROG	UHGV-1383069_66	phrog_20593	52.2	0.0000000000000068	N/A	unknown function
PHROG	UHGV-1383069_67	phrog_2118	103.9	1.8e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1383069_67	UniRef90_A0A173RDU7	258.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1383069_67	1235799.C818_02668	174.0	0	endonuclease activity	N/A
Pfam	UHGV-1383069_67	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1383069_67	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1383069_67	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1383069_68	phrog_874	156.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1383069_68	411468.CLOSCI_00298	171.0	0	N/A	N/A
structural_annotation	UHGV-1383069_68	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1383069	Yes	41,040	40	71	1
UHGV-0149223	No	41,040	40	71	1
UHGV-1628799	No	25,228	41	44	1
UHGV-1660609	No	18,387	41	32	1