vOTU vOTU-022115

vOTU: vOTU-022115

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-022115
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00025 → vSUBFAM-00671 → vGENUS-02710 → vOTU-022115
Host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508 → CAG-273
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0156433
Biosample ID	SAMN06111965
Genome length (bp)	24,272 bps
CheckV completeness	62.70% (Medium-quality)
CDS count	51
CDS density	89.68%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508 → CAG-273	Total connections	37	Host agreement	78.38
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508 → CAG-273 → CAG-273 sp000437855	Total connections	17	Host agreement	82.35

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 62.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0156433_1	K03086	552.5	0	rpoD; RNA polymerase primary sigma factor	N/A
PHROG	UHGV-0156433_1	phrog_351	342.1	0	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-0156433_1	UniRef90_R6BEP9	614.0	0	RNA polymerase sigma factor SigA	N/A
eggNOG-mapper	UHGV-0156433_1	555079.Toce_0933	464.0	0	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth	N/A
PADLOC	UHGV-0156433_1	MzaA_00001	234.0	0	NA	mzaABCDE
Pfam	UHGV-0156433_1	PF03979	N/A	N/A	Sigma-70 factor, region 1.1	Sigma70_r1_1
Pfam	UHGV-0156433_1	PF00140	N/A	N/A	Sigma-70 factor, region 1.2	Sigma70_r1_2
Pfam	UHGV-0156433_1	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0156433_1	PF04539	N/A	N/A	Sigma-70 region 3	Sigma70_r3
Pfam	UHGV-0156433_1	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-0156433_1	NF006666.0	N/A	N/A	RNA polymerase sigma factor RpoD	N/A
COG	UHGV-0156433_1	COG0568	N/A	N/A	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	N/A
HAMAP	UHGV-0156433_1	MF_00963	N/A	N/A	RNA polymerase sigma factor RpoD [rpoD]	N/A
KOfam	UHGV-0156433_3	K06400	383.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0156433_3	phrog_95	367.4	0	integrase	integration and excision
UniRef90	UHGV-0156433_3	UniRef90_R6Y141	482.0	0	Site-specific recombinase DNA invertase Pin	N/A
eggNOG-mapper	UHGV-0156433_3	580327.Tthe_0270	300.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0156433_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0156433_3	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0156433_3	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0156433_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0156433_3	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0156433_4	phrog_87	80.7	1.6e-23	metallo-protease	other
UniRef90	UHGV-0156433_4	UniRef90_A0A7X9HW64	87.8	1.81e-19	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0156433_4	698758.AXY_01820	76.6	0.00000000000000113	Zn peptidase	N/A
Pfam	UHGV-0156433_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0156433_4	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0156433_4	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0156433_5	UniRef90_A0A7W2A7S3	141.0	1.16e-37	N/A	N/A
Pfam	UHGV-0156433_5	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-0156433_5	PF01351,MF_00052_A,TIGR00729,COG1039	N/A	N/A	N/A	N/A
UniRef90	UHGV-0156433_6	UniRef90_A0A8A3VI41	50.8	0.00000183	Zinc ribbon domain-containing protein	N/A
Pfam	UHGV-0156433_6	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
KOfam	UHGV-0156433_7	K07729	43.2	0.000000000009	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0156433_7	phrog_8	51.0	0.000000000000037	transcriptional regulator	transcription regulation
UniRef90	UHGV-0156433_7	UniRef90_A0A1Q6LHM3	111.0	2.37e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0156433_7	697281.Mahau_2933	61.2	0.000000000187	transcriptional regulator, XRE family	N/A
Pfam	UHGV-0156433_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0156433_7	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0156433_7	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0156433_8	K07729	42.4	0.000000000015	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0156433_8	UniRef90_A0A2T0BQ53	68.2	0.000000000000174	HTH-type transcriptional regulator Xre	N/A
eggNOG-mapper	UHGV-0156433_8	697281.Mahau_2932	54.7	0.00000000728	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0156433_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0156433_8	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0156433_8	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0156433_13	PF09943,COG3461	N/A	N/A	N/A	N/A
PHROG	UHGV-0156433_15	phrog_14970	255.4	0	N/A	unknown function
UniRef90	UHGV-0156433_15	UniRef90_A0A3P6JH63	197.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-0156433_15	469604.HMPREF0946_00830	205.0	0	DNA recombination	N/A
COG	UHGV-0156433_15	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0156433_15	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0156433_16	K03111	143.1	2.90069e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0156433_16	phrog_44	145.4	2.99878e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0156433_16	UniRef90_R6YHT0	191.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0156433_16	1291050.JAGE01000001_gene1719	164.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0156433_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0156433_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0156433_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0156433_16	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0156433_16	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0156433_17	phrog_72	65.1	1.2e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0156433_17	UniRef90_A0A285PU94	63.9	0.00000000102	Recombinase NinB	N/A
eggNOG-mapper	UHGV-0156433_17	411468.CLOSCI_00314	72.4	0.0000000000000942	N/A	N/A
structural_annotation	UHGV-0156433_17	NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0156433_19	phrog_9327	84.6	1.2e-24	primosomal protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0156433_19	UniRef90_UPI001297E3E8	73.2	0.00000000000912	N/A	N/A
eggNOG-mapper	UHGV-0156433_19	927704.SELR_18440	84.0	2.91e-16	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
COG	UHGV-0156433_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0156433_20	phrog_9804	109.2	3.8e-32	N/A	unknown function
UniRef90	UHGV-0156433_20	UniRef90_A0A3P6JF27	189.0	0	Loader and inhibitor of phage G40P	N/A
eggNOG-mapper	UHGV-0156433_20	1499683.CCFF01000013_gene503	186.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0156433_20	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0156433_20	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0156433_21	phrog_1123	55.3	0.0000000000000011	N/A	unknown function
UniRef90	UHGV-0156433_21	UniRef90_A0A7X6P6Q9	65.9	0.00000000000736	DNA gyrase	N/A
eggNOG-mapper	UHGV-0156433_21	445972.ANACOL_03346	63.9	0.00000000000666	N/A	N/A
structural_annotation	UHGV-0156433_21	PF03551,TIGR02719,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-0156433_24	phrog_190	135.8	2.69999e-40	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0156433_24	UniRef90_A0A7C9LJY9	135.0	5.88e-39	N/A	N/A
eggNOG-mapper	UHGV-0156433_24	293826.Amet_2598	117.0	1.01e-32	N/A	N/A
Pfam	UHGV-0156433_24	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0156433_24	PF06356	N/A	N/A	N/A	N/A
UniRef90	UHGV-0156433_25	UniRef90_A0A1Q6L7Q8	143.0	3.29305e-43	NOB1_Zn_bind domain-containing protein	N/A
Pfam	UHGV-0156433_25	PF08772	N/A	N/A	Nin one binding (NOB1) Zn-ribbon like	NOB1_Zn_bind
structural_annotation	UHGV-0156433_25	PF09947	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0156433_26	PF09871,TIGR00739	N/A	N/A	N/A	N/A
PHROG	UHGV-0156433_30	phrog_17260	40.5	0.000000000043	N/A	unknown function
eggNOG-mapper	UHGV-0156433_30	1232449.BAHV02000018_gene1537	144.0	1.62971e-42	N/A	N/A
PHROG	UHGV-0156433_39	phrog_36	44.6	0.0000000000029	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0156433_39	394503.Ccel_3300	52.0	0.00000173	N/A	N/A
structural_annotation	UHGV-0156433_39	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0156433_40	phrog_355	57.3	3e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0156433_40	UniRef90_UPI000934E5E6	94.0	4.64e-23	N/A	N/A
eggNOG-mapper	UHGV-0156433_40	999411.HMPREF1092_00897	96.7	6.71e-25	N/A	N/A
Pfam	UHGV-0156433_40	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0156433_40	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0156433_41	phrog_918	127.3	3.9e-38	N/A	unknown function
UniRef90	UHGV-0156433_41	UniRef90_UPI000F4ECE86	137.0	1.79e-40	N/A	N/A
eggNOG-mapper	UHGV-0156433_41	1504823.CCMM01000008_gene1021	144.0	2.94273e-44	N/A	N/A
Pfam	UHGV-0156433_41	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0156433_41	PF19791	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0156433_43	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-0156433_44	K06909	133.1	3e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0156433_44	phrog_979	151.5	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0156433_44	UniRef90_A0A0M2NDA4	532.0	0	Phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0156433_44	1232449.BAHV02000016_gene1824	533.0	0	N/A	N/A
Pfam	UHGV-0156433_44	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0156433_44	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0156433_44	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0156433_46	phrog_156	142.6	2.20004e-42	portal protein	head and packaging
UniRef90	UHGV-0156433_46	UniRef90_A0A8D9UHD1	361.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0156433_46	1121091.AUMP01000003_gene2583	311.0	0	N/A	N/A
structural_annotation	UHGV-0156433_46	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0156433_48	phrog_1357	230.7	0	major head protein	head and packaging
UniRef90	UHGV-0156433_48	UniRef90_A0A8D9UHB3	286.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0156433_48	696281.Desru_1092	244.0	0	N/A	N/A
NCBIFam	UHGV-0156433_48	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0156433_48	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0156433_50	1232449.BAHV02000016_gene1817	60.8	0.00000000228	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0156433	Yes	24,272	29	63	1
UHGV-1521596	No	22,740	29	59	1
UHGV-1837681	No	12,389	29	33	1