vOTU vOTU-022147

vOTU: vOTU-022147

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-022147
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00118 → vOTU-022147
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → UBA1242 → UBA11490 → ERR7738626_bin.502
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0189710
Biosample ID	SAMN09781755
Genome length (bp)	54,903 bps
CheckV completeness	65.12% (Medium-quality)
CDS count	84
CDS density	91.93%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → UBA1242 → UBA11490 → ERR7738626_bin.502	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → UBA1242 → HGM11372 → HGM11372 sp900767715	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 65.12)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0189710_1	PF14173	N/A	N/A	N/A	N/A
KOfam	UHGV-0189710_8	K03466	168.9	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-0189710_8	phrog_1358	191.2	0	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0189710_8	UniRef90_UPI00139220C6	144.0	8.78e-36	DNA translocase FtsK	N/A
eggNOG-mapper	UHGV-0189710_8	1033810.HLPCO_000289	134.0	2.96e-31	Ftsk_gamma	N/A
PADLOC	UHGV-0189710_8	SspH_00002	98.7	4.8e-29	SspH	SSP
Pfam	UHGV-0189710_8	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-0189710_8	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
Pfam	UHGV-0189710_11	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
Pfam	UHGV-0189710_11	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
KOfam	UHGV-0189710_12	K14060	117.1	1e-34	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0189710_12	phrog_125	108.5	5e-32	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0189710_12	UniRef90_A0A5D0VR83	76.3	0.0000000000000995	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0189710_12	1276756.AUEX01000023_gene2312	58.2	0.0000000767	Resolvase helix-turn-helix domain protein	N/A
Pfam	UHGV-0189710_12	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0189710_12	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0189710_12	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0189710_18	K14060	99.3	1.6e-29	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0189710_18	phrog_125	170.3	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0189710_18	UniRef90_A0A553IH27	218.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0189710_18	441768.ACL_1085	218.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0189710_18	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0189710_18	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
PHROG	UHGV-0189710_19	phrog_1571	80.2	1.3e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0189710_19	UniRef90_A0A1Q9J7B4	98.6	2.15e-24	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0189710_19	1123399.AQVE01000010_gene3222	75.9	0.00000000000000106	HNH endonuclease	N/A
COG	UHGV-0189710_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0189710_23	K17680	102.9	2.6e-30	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0189710_23	phrog_239	102.0	6.2e-30	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0189710_23	UniRef90_UPI000C79E626	96.7	1.6e-18	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0189710_23	1131462.DCF50_p1819	80.1	0.000000000000149	N/A	N/A
Pfam	UHGV-0189710_23	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0189710_23	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0189710_23	PF03796,MF_04154,NF006443,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0189710_24	phrog_16304	48.6	0.000000000000049	N/A	unknown function
Pfam	UHGV-0189710_24	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0189710_26	PF09105,MF_01804,TIGR00738,COG1386	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0189710_28	742733.HMPREF9469_00873	62.8	0.0000000000658	N/A	N/A
structural_annotation	UHGV-0189710_28	PF11506,MF_00984,NF006039,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0189710_30	phrog_10048	117.4	1.9e-39	N/A	unknown function
eggNOG-mapper	UHGV-0189710_30	1111134.HMPREF1253_1200	124.0	1.36e-31	N/A	N/A
structural_annotation	UHGV-0189710_30	PF06420,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0189710_31	phrog_298	72.0	7.3e-21	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0189710_31	UniRef90_A0A2K9V3J9	75.9	0.000000000000166	Exonuclease	N/A
eggNOG-mapper	UHGV-0189710_31	1399942.U3PDT7_9CAUD	60.1	0.0000000182	nuclease activity	N/A
Pfam	UHGV-0189710_31	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
structural_annotation	UHGV-0189710_31	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
Pfam	UHGV-0189710_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0189710_36	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
UniRef90	UHGV-0189710_37	UniRef90_R7I0L3	52.4	0.000000199	N/A	N/A
eggNOG-mapper	UHGV-0189710_37	1235792.C808_05261	49.3	0.000000703	N/A	N/A
structural_annotation	UHGV-0189710_37	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0189710_38	UniRef90_A0A6H3LKI1	66.2	0.0000000000178	XRE family transcriptional regulator	N/A
Pfam	UHGV-0189710_38	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0189710_38	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0189710_39	phrog_8	54.3	0.0000000000000034	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0189710_39	1401067.HMPREF0872_00455	56.6	0.000000256	Peptidase S24-like	N/A
Pfam	UHGV-0189710_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0189710_39	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-0189710_40	K14059	135.1	8.60001e-40	int; integrase	N/A
PHROG	UHGV-0189710_40	phrog_1	133.0	2.7e-39	integrase	integration and excision
UniRef90	UHGV-0189710_40	UniRef90_A0A223MI02	121.0	3.01e-27	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0189710_40	908340.HMPREF9406_3938	125.0	1.48e-29	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0189710_40	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0189710_40	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0189710_40	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0189710_40	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0189710_45	K00986	114.9	9.5e-34	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0189710_45	phrog_1423	207.9	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0189710_45	UniRef90_R6GXU6	298.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0189710_45	665950.HMPREF1025_01556	233.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0189710_45	icity0040	97.5	2.3e-28	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0189710_45	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0189710_45	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
Pfam	UHGV-0189710_47	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0189710_47	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0189710_47	PF07210,PF19789,TIGR04183,COG2033	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0189710_49	1280689.AUJC01000011_gene1534	54.3	0.00000645	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0189710_49	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
eggNOG-mapper	UHGV-0189710_52	1265845.PWEIH_02474	55.5	0.00000406	COG4886 Leucine-rich repeat (LRR) protein	N/A
COG	UHGV-0189710_52	COG4886	N/A	N/A	Leucine-rich repeat (LRR) protein	N/A
structural_annotation	UHGV-0189710_52	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0189710_56	469596.HMPREF9488_01310	75.5	0.00000000000000834	N/A	N/A
structural_annotation	UHGV-0189710_56	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0189710_57	PF06141	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0189710_59	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0189710_62	phrog_29	234.0	0	major head protein	head and packaging
UniRef90	UHGV-0189710_62	UniRef90_UPI00082C04A5	314.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0189710_62	1158612.I580_01912	312.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0189710_62	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0189710_62	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0189710_63	phrog_909	75.5	5.4e-22	major head protein	head and packaging
UniRef90	UHGV-0189710_63	UniRef90_A0A512PLH0	79.7	1.4e-16	Putative structural protein-phage associated	N/A
eggNOG-mapper	UHGV-0189710_63	1158607.UAU_01759	87.4	2.84e-20	N/A	N/A
structural_annotation	UHGV-0189710_63	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0189710_65	phrog_64	129.5	1.7e-38	portal protein	head and packaging
UniRef90	UHGV-0189710_65	UniRef90_A0A7X7EMS9	358.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0189710_65	428127.EUBDOL_01552	187.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0189710_65	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0189710_65	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0189710_67	phrog_38	115.9	3e-34	terminase large subunit	head and packaging
eggNOG-mapper	UHGV-0189710_67	428127.EUBDOL_01551	151.0	3.1e-38	chromosome segregation	N/A
NCBIFam	UHGV-0189710_67	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0189710_67	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0189710_67	PF17289,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
UniRef90	UHGV-0189710_69	UniRef90_A0A843H876	310.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0189710_69	573061.Clocel_3554	77.4	0.0000000000000984	GIY-YIG catalytic domain	N/A
Pfam	UHGV-0189710_69	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
structural_annotation	UHGV-0189710_69	PF19835,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0189710_70	K00558	151.7	4.2039e-45	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0189710_70	phrog_116	167.3	0	DNA methyltransferase	other
UniRef90	UHGV-0189710_70	UniRef90_A0A7K3ZH92	443.0	0	DNA (Cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0189710_70	449673.BACSTE_02181	313.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0189710_70	MTase_II_00164	158.5	0	Type II methyltransferase	RM
Pfam	UHGV-0189710_70	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0189710_70	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0189710_70	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0189710_70	PF00145,MF_02237,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0189710_71	K00571	119.3	4.6e-35	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0189710_71	phrog_23224	85.2	4.6e-25	DNA methyltransferase	other
UniRef90	UHGV-0189710_71	UniRef90_A0A1V5WLT3	188.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0189710_71	981335.G4W934_9CAUD	169.0	0	N-methyltransferase activity	N/A
PADLOC	UHGV-0189710_71	MTase_II_00172	87.1	3e-25	Type II methyltransferase	RM
Pfam	UHGV-0189710_71	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0189710_71	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0189710_73	phrog_3136	108.4	4e-32	N/A	unknown function
UniRef90	UHGV-0189710_73	UniRef90_UPI001C26B029	90.5	6.17e-19	ASCH domain-containing protein	N/A
COG	UHGV-0189710_73	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0189710_73	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0189710_74	phrog_37900	47.6	0.000000000000003	N/A	unknown function
UniRef90	UHGV-0189710_74	UniRef90_H1CBW4	95.9	5.96e-20	N/A	N/A
eggNOG-mapper	UHGV-0189710_74	931626.Awo_c11420	117.0	8.85e-27	Listeria-Bacteroides repeat domain (List_Bact_rpt)	N/A
Pfam	UHGV-0189710_74	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0189710_74	COG3209	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0189710_74	PF19789	N/A	N/A	N/A	N/A
UniRef90	UHGV-0189710_75	UniRef90_UPI000BA11EF5	88.6	7.09e-19	N/A	N/A
eggNOG-mapper	UHGV-0189710_75	1235792.C808_00626	77.0	0.00000000000000391	N/A	N/A
PHROG	UHGV-0189710_77	phrog_478	77.3	1.5e-22	site-specific recombination directionality factor RDF	integration and excision
eggNOG-mapper	UHGV-0189710_77	1123302.KB904167_gene507	67.4	0.00000000000166	N/A	N/A
eggNOG-mapper	UHGV-0189710_79	1410622.JNKY01000013_gene1458	147.0	1.9e-34	stress, protein	N/A
COG	UHGV-0189710_79	COG2310	N/A	N/A	Stress response protein SCP2	N/A
structural_annotation	UHGV-0189710_79	PF02342,NF041916,COG2310	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0189710_82	PF11717	N/A	N/A	N/A	N/A
PHROG	UHGV-0189710_83	phrog_7711	138.5	2.4e-41	N/A	unknown function
UniRef90	UHGV-0189710_83	UniRef90_UPI001C38CAD2	117.0	1.13e-30	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0189710_83	1226322.HMPREF1545_00031	125.0	1.75e-35	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0189710	Yes	54,903	34	65	1
UHGV-0194218	No	37,558	33	81	1
UHGV-0015189	No	43,663	33	54	1