vOTU vOTU-022157

vOTU: vOTU-022157

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-022157
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-15996 → vOTU-022157
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0157913
Biosample ID	SAMN06112064
Genome length (bp)	30,498 bps
CheckV completeness	86.68% (Medium-quality)
CDS count	44
CDS density	91.28%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1599	Host agreement	92.25
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	10	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 86.68)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0157913_1	phrog_1914	144.3	7.59504e-43	N/A	unknown function
UniRef90	UHGV-0157913_1	UniRef90_UPI000E543E50	357.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0157913_1	1160721.RBI_I01604	176.0	0	N/A	N/A
Pfam	UHGV-0157913_1	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0157913_1	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0157913_1	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0157913_2	phrog_8	46.4	0.00000000000081	transcriptional regulator	transcription regulation
UniRef90	UHGV-0157913_2	UniRef90_UPI0015F3DE1D	281.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0157913_2	663278.Ethha_2423	73.2	0.0000000000000185	sequence-specific DNA binding	N/A
Pfam	UHGV-0157913_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0157913_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0157913_2	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157913_3	UniRef90_UPI000E51362F	130.0	1.26e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0157913_3	411461.DORFOR_00030	51.2	0.0000000865	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0157913_3	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0157913_3	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0157913_6	phrog_19458	296.3	0	primase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0157913_6	411459.RUMOBE_01108	264.0	0	N/A	N/A
COG	UHGV-0157913_6	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
PHROG	UHGV-0157913_7	phrog_8684	103.6	8e-31	N/A	unknown function
UniRef90	UHGV-0157913_7	UniRef90_UPI000E48855B	144.0	9.38029e-42	YopX family protein	N/A
eggNOG-mapper	UHGV-0157913_7	1235799.C818_02660	80.9	8.82e-18	YopX protein	N/A
Pfam	UHGV-0157913_7	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0157913_7	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0157913_7	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0157913_8	phrog_6058	42.4	0.0000000000082	N/A	unknown function
structural_annotation	UHGV-0157913_8	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-0157913_11	K03497	156.8	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0157913_11	phrog_6218	242.9	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157913_11	UniRef90_A0A3D3D7T1	714.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0157913_11	394503.Ccel_3306	263.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0157913_11	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0157913_11	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0157913_11	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0157913_11	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0157913_13	phrog_323	81.5	4.1e-27	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157913_13	UniRef90_UPI001C01CFF8	267.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-0157913_13	394503.Ccel_3305	300.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
Pfam	UHGV-0157913_13	PF00249	N/A	N/A	Myb-like DNA-binding domain	Myb_DNA-binding
dbAPIS	UHGV-0157913_13	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0157913_13	PF11112,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-0157913_14	phrog_824	145.9	1.30321e-43	N/A	unknown function
UniRef90	UHGV-0157913_14	UniRef90_A0A3D3D6C6	247.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0157913_14	397288.C806_00096	157.0	0	VRR_NUC	N/A
Pfam	UHGV-0157913_14	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0157913_14	PF08774	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157913_18	UniRef90_UPI000E4DC4DA	137.0	1.32e-38	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0157913_18	PF15597	N/A	N/A	N/A	N/A
PHROG	UHGV-0157913_19	phrog_2999	42.0	0.000000000021	N/A	unknown function
PHROG	UHGV-0157913_21	phrog_3584	140.8	1.10002e-41	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0157913_21	1235800.C819_00515	67.4	0.000000000169	N/A	N/A
structural_annotation	UHGV-0157913_21	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0157913_22	phrog_31049	40.8	0.00000000000027	N/A	unknown function
eggNOG-mapper	UHGV-0157913_22	394503.Ccel_3053	53.5	0.0000004	N/A	N/A
structural_annotation	UHGV-0157913_22	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0157913_23	phrog_119	70.7	2.3e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157913_23	UniRef90_A0A412ULY9	220.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0157913_23	1405.DJ92_863	86.3	1.32e-20	HNH endonuclease	N/A
Pfam	UHGV-0157913_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0157913_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0157913_24	phrog_5110	83.0	2.5e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0157913_24	UniRef90_A0A1M5U1D5	113.0	1.2e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0157913_24	1211817.CCAT010000053_gene2128	100.0	3.14e-26	N/A	N/A
Pfam	UHGV-0157913_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0157913_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157913_25	UniRef90_A0A358Q126	161.0	0	Terminase (Fragment)	N/A
eggNOG-mapper	UHGV-0157913_25	86416.Clopa_0337	205.0	0	Phage Terminase	N/A
COG	UHGV-0157913_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
PHROG	UHGV-0157913_26	phrog_9	244.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0157913_26	UniRef90_A0A412UM03	742.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0157913_26	86416.Clopa_0337	429.0	0	Phage Terminase	N/A
Pfam	UHGV-0157913_26	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0157913_26	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0157913_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0157913_26	PF20441,MF_04147,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0157913_27	phrog_12	95.6	4.1e-28	portal protein	head and packaging
UniRef90	UHGV-0157913_27	UniRef90_A0A412ULV9	736.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0157913_27	349161.Dred_2606	260.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0157913_27	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0157913_27	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0157913_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0157913_27	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0157913_28	K01358	144.2	1.3004e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0157913_28	phrog_94	210.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0157913_28	UniRef90_A0A412ULU1	442.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0157913_28	86416.Clopa_0340	172.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0157913_28	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0157913_28	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0157913_28	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0157913_29	phrog_10	124.9	7.9e-37	major head protein	head and packaging
UniRef90	UHGV-0157913_29	UniRef90_A0A412ULW9	736.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0157913_29	1211817.CCAT010000053_gene2132	319.0	0	Phage capsid family	N/A
Pfam	UHGV-0157913_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0157913_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0157913_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0157913_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0157913_30	phrog_749	56.2	5.9e-16	N/A	unknown function
UniRef90	UHGV-0157913_30	UniRef90_A0A1G5CMX8	107.0	3.03e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0157913_30	1211817.CCAT010000053_gene2133	59.7	0.000000000292	N/A	N/A
PHROG	UHGV-0157913_31	phrog_19734	73.5	2.7e-21	N/A	unknown function
UniRef90	UHGV-0157913_31	UniRef90_UPI00057FE645	61.6	0.000000000557	phage head closure protein	N/A
eggNOG-mapper	UHGV-0157913_31	86416.Clopa_0343	65.5	0.00000000000358	N/A	N/A
structural_annotation	UHGV-0157913_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157913_32	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157913_33	UniRef90_UPI000E5564A4	265.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0157913_33	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0157913_33	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0157913_34	phrog_88	75.9	5.7e-22	major tail protein	tail
UniRef90	UHGV-0157913_34	UniRef90_A0A1G5CNS8	151.0	5.5071e-43	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0157913_34	1321782.HMPREF1986_01362	65.5	0.000000000139	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0157913_34	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0157913_34	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157913_35	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0157913_36	K20478	74.2	1.7e-22	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0157913_36	phrog_1272	241.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0157913_36	UniRef90_A0A412ULX0	1749.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0157913_36	588581.Cpap_1264	236.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0157913_36	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0157913_36	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0157913_36	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0157913_37	phrog_33	73.8	4.1e-21	distal tail protein Dit	tail
UniRef90	UHGV-0157913_37	UniRef90_A0A1G5CPA2	134.0	1.2e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-0157913_37	1160721.RBI_I01575	88.6	3.57e-18	Phage tail protein	N/A
COG	UHGV-0157913_37	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0157913_37	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0157913_38	phrog_1067	98.0	3.8e-29	minor head protein	head and packaging
UniRef90	UHGV-0157913_38	UniRef90_A0A1G5CPD2	146.0	1.47e-36	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0157913_38	1462527.CCDM010000003_gene3730	62.0	0.000000201	gp58-like protein	N/A
Pfam	UHGV-0157913_38	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0157913_38	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0157913_38	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157913_38	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0157913_39	phrog_5302	285.5	0	tail protein	tail
UniRef90	UHGV-0157913_39	UniRef90_A0A373XLZ6	975.0	0	N/A	N/A
eggNOG-mapper	UHGV-0157913_39	742740.HMPREF9474_02337	332.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0157913_39	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0157913_39	PF10651,NF040788	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157913_41	UniRef90_A0A373XMY3	172.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0157913_41	742765.HMPREF9457_03364	85.1	1.64e-20	N/A	N/A
PHROG	UHGV-0157913_42	phrog_881	79.9	2e-23	holin	lysis
UniRef90	UHGV-0157913_42	UniRef90_R7EEV6	101.0	7.71e-27	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0157913_42	742740.HMPREF9474_02251	103.0	1.27e-28	Putative phage holin Dp-1	N/A
Pfam	UHGV-0157913_42	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0157913_42	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-0157913_43	K01447	57.5	3.1e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0157913_43	phrog_20388	303.7	0	endolysin	lysis
UniRef90	UHGV-0157913_43	UniRef90_A0A374N1L8	548.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0157913_43	1203606.HMPREF1526_00253	313.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0157913_43	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0157913_43	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0157913_43	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0157913_43	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0157913_44	411483.FAEPRAA2165_03404	80.5	1.41e-17	Belongs to the N(4) N(6)-methyltransferase family	N/A
COG	UHGV-0157913_44	COG0863	N/A	N/A	DNA modification methylase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0157913	Yes	30,498	40	87	1
UHGV-1471665	No	30,498	40	87	1
UHGV-0194511	No	22,113	39	63	1
UHGV-1692695	No	17,330	41	49	1