vOTU vOTU-022268

vOTU: vOTU-022268

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-022268
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vGENUS-00408 → vOTU-022268
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0163399
Biosample ID	SAMN06233224
Genome length (bp)	21,189 bps
CheckV completeness	50.61% (Medium-quality)
CDS count	25
CDS density	83.79%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	118	Host agreement	98.31
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	2561	Host agreement	99.8

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 50.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0163399_6	K22300	57.6	3.1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0163399_6	phrog_8	49.5	0.000000000000093	transcriptional regulator	transcription regulation
UniRef90	UHGV-0163399_6	UniRef90_E2ZI88	103.0	2.82e-25	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0163399_6	748224.HMPREF9436_01379	103.0	4.73e-26	N/A	N/A
Pfam	UHGV-0163399_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0163399_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0163399_7	phrog_22683	148.5	9.80909e-45	N/A	unknown function
UniRef90	UHGV-0163399_7	UniRef90_A0A3E2U205	146.0	4.62428e-44	N/A	N/A
eggNOG-mapper	UHGV-0163399_7	482234.SCAZ3_03515	133.0	8.42e-40	N/A	N/A
AcrCatalog	UHGV-0163399_7	cluster_3962	123.0	3.21e-40	NA	N/A
Pfam	UHGV-0163399_7	PF13783	N/A	N/A	N/A	DUF4177
structural_annotation	UHGV-0163399_7	PF13783,NF008362,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0163399_8	K06400	388.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0163399_8	phrog_95	370.5	0	integrase	integration and excision
UniRef90	UHGV-0163399_8	UniRef90_A0A2V2F5B5	672.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0163399_8	1121468.AUBR01000008_gene2069	300.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0163399_8	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0163399_8	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0163399_8	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0163399_8	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0163399_8	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0163399_9	phrog_1129	62.3	6e-18	holin	lysis
UniRef90	UHGV-0163399_9	UniRef90_A0A367FT42	163.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0163399_9	693746.OBV_13280	110.0	9.4e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0163399_9	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0163399_9	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0163399_10	phrog_4105	103.0	1.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-0163399_10	657322.FPR_27220	152.0	0	N/A	N/A
KOfam	UHGV-0163399_11	K07273	185.8	0	acm; lysozyme	N/A
PHROG	UHGV-0163399_11	phrog_291	160.1	0	endolysin	lysis
UniRef90	UHGV-0163399_11	UniRef90_A0A367G061	524.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0163399_11	411471.SUBVAR_06927	317.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0163399_11	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0163399_11	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0163399_11	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0163399_11	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0163399_12	phrog_24267	57.5	3.2e-16	N/A	unknown function
UniRef90	UHGV-0163399_12	UniRef90_G4Q8U0	69.7	0.000000000128	Side tail fiber protein from lambdoid prophage Rac	N/A
eggNOG-mapper	UHGV-0163399_12	508419.F8J176_9CAUD	114.0	7.28e-26	peptidoglycan catabolic process	N/A
Pfam	UHGV-0163399_12	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
Pfam	UHGV-0163399_12	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
PHROG	UHGV-0163399_13	phrog_19111	48.9	1.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0163399_13	756499.Desde_3162	108.0	1.26e-23	nuclear chromosome segregation	N/A
COG	UHGV-0163399_13	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0163399_15	phrog_13589	183.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0163399_15	742733.HMPREF9469_05009	229.0	0	N/A	N/A
PHROG	UHGV-0163399_16	phrog_31538	42.0	0.000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0163399_16	428125.CLOLEP_01433	53.5	0.0000000518	N/A	N/A
structural_annotation	UHGV-0163399_17	PF12245	N/A	N/A	N/A	N/A
PHROG	UHGV-0163399_19	phrog_18444	79.1	3.6e-23	N/A	unknown function
UniRef90	UHGV-0163399_19	UniRef90_UPI00156E9A45	59.3	0.000000000251	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0163399_19	1294142.CINTURNW_1707	55.8	0.000000000987	N/A	N/A
PHROG	UHGV-0163399_20	phrog_18190	108.1	2.4e-32	N/A	unknown function
eggNOG-mapper	UHGV-0163399_20	411471.SUBVAR_06932	318.0	0	N/A	N/A
structural_annotation	UHGV-0163399_20	PF05954,PF00629,PF03424,NF033848,NF033675,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0163399_21	phrog_1194	58.2	1.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-0163399_21	411471.SUBVAR_06933	201.0	0	N/A	N/A
structural_annotation	UHGV-0163399_21	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0163399_22	phrog_1535	76.7	1.2e-31	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0163399_22	411471.SUBVAR_06934	129.0	3.65e-29	tape measure	N/A
COG	UHGV-0163399_22	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0163399_23	phrog_706	110.5	1.5e-32	N/A	unknown function
UniRef90	UHGV-0163399_23	UniRef90_UPI0019671E36	229.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0163399_23	1226322.HMPREF1545_00058	169.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0163399_23	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0163399_23	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0163399_24	phrog_11299	89.0	5.4e-26	N/A	unknown function
UniRef90	UHGV-0163399_24	UniRef90_UPI001C03A209	117.0	5.63e-31	V-type proton ATPase subunit E	N/A
eggNOG-mapper	UHGV-0163399_24	1226322.HMPREF1545_00057	120.0	4.11e-33	N/A	N/A
KOfam	UHGV-0163399_25	K01887	409.8	0	RARS, argS; arginyl-tRNA synthetase [EC:6.1.1.19]	N/A
PHROG	UHGV-0163399_25	phrog_15344	124.7	0	N/A	unknown function
UniRef90	UHGV-0163399_25	UniRef90_A0A367G8N2	1048.0	0	Arginine--tRNA ligase	N/A
eggNOG-mapper	UHGV-0163399_25	411471.SUBVAR_06446	902.0	0	Arginyl-tRNA synthetase	N/A
Pfam	UHGV-0163399_25	PF03485	N/A	N/A	Arginyl tRNA synthetase N terminal domain	Arg_tRNA_synt_N
Pfam	UHGV-0163399_25	PF00750	N/A	N/A	tRNA synthetases class I (R)	tRNA-synt_1d
Pfam	UHGV-0163399_25	PF05746	N/A	N/A	DALR anticodon binding domain	DALR_1
NCBIFam	UHGV-0163399_25	TIGR00456.1	N/A	N/A	arginine--tRNA ligase	N/A
COG	UHGV-0163399_25	COG0018	N/A	N/A	Arginyl-tRNA synthetase	N/A
HAMAP	UHGV-0163399_25	MF_00123	N/A	N/A	Arginine--tRNA ligase [argS]	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0163399	Yes	21,189	56	51	1
UHGV-0170755	No	12,427	55	29	1
UHGV-1875369	No	11,196	55	28	1