vOTU vOTU-022269

vOTU: vOTU-022269

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-022269
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00146 → vGENUS-13889 → vOTU-022269
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0163457
Biosample ID	SAMN06164861
Genome length (bp)	29,113 bps
CheckV completeness	82.52% (Medium-quality)
CDS count	43
CDS density	91.52%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	248	Host agreement	72.98
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	20	Host agreement	90

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 82.52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0163457_1	phrog_13589	200.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0163457_1	742733.HMPREF9469_05009	276.0	0	N/A	N/A
PHROG	UHGV-0163457_2	phrog_31538	75.9	5.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0163457_2	428125.CLOLEP_01433	52.8	0.000000114	N/A	N/A
PHROG	UHGV-0163457_3	phrog_15594	100.9	7.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0163457_3	862969.SCI_1223	63.9	0.00000000000591	N/A	N/A
structural_annotation	UHGV-0163457_3	PF16640,TIGR04488	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163457_4	UniRef90_A0A2V2D4A1	55.5	0.00000000294	XkdX family protein	N/A
eggNOG-mapper	UHGV-0163457_4	411468.CLOSCI_01507	48.5	0.000000269	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0163457_4	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0163457_4	PF09693,TIGR01669	N/A	N/A	N/A	N/A
KOfam	UHGV-0163457_6	K00986	74.9	1.2e-21	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0163457_6	phrog_1423	154.2	1.4013e-45	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163457_6	UniRef90_A0A1C5N0E2	603.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
eggNOG-mapper	UHGV-0163457_6	478749.BRYFOR_08556	245.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0163457_6	icity0040	53.2	0.0000000000000018	RT (reverse transcriptase)	CRISPR-CAS
COG	UHGV-0163457_6	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0163457_6	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0163457_7	phrog_17147	222.2	0	N/A	unknown function
UniRef90	UHGV-0163457_7	UniRef90_A0A1M6MWL0	171.0	2.92031e-42	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	N/A
eggNOG-mapper	UHGV-0163457_7	33035.JPJF01000043_gene1001	178.0	0	N/A	N/A
PHROG	UHGV-0163457_8	phrog_16164	166.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0163457_8	742733.HMPREF9469_01804	58.5	0.000000174	N/A	N/A
eggNOG-mapper	UHGV-0163457_9	1235798.C817_04596	56.6	0.00000461	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0163457_9	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0163457_10	phrog_14030	133.3	1.2e-39	N/A	unknown function
UniRef90	UHGV-0163457_10	UniRef90_A0A1Q6K9M8	555.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0163457_10	33035.JPJF01000093_gene2240	329.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0163457_10	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0163457_10	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-0163457_10	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0163457_10	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0163457_11	phrog_13289	416.6	0	tail protein	tail
UniRef90	UHGV-0163457_11	UniRef90_A0A1Q6KA70	1142.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0163457_11	1232446.BAIE02000002_gene836	471.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0163457_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0163457_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0163457_11	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0163457_11	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0163457_12	phrog_33	70.8	3.1e-20	distal tail protein Dit	tail
UniRef90	UHGV-0163457_12	UniRef90_UPI001570C170	365.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0163457_12	1235798.C817_02569	214.0	0	tail component	N/A
NCBIFam	UHGV-0163457_12	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0163457_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0163457_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0163457_13	phrog_1272	217.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0163457_13	UniRef90_A0A373N7M8	1113.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0163457_13	1035184.HMPREF1042_1328	306.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0163457_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0163457_13	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0163457_13	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0163457_15	phrog_88	97.3	1.7e-28	major tail protein	tail
UniRef90	UHGV-0163457_15	UniRef90_D4M596	387.0	0	Phage major tail protein, phi13 family	N/A
Pfam	UHGV-0163457_15	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0163457_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0163457_15	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0163457_16	phrog_5	47.8	0.00000000000035	tail completion or Neck1 protein	connector
UniRef90	UHGV-0163457_16	UniRef90_D4M595	244.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0163457_16	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0163457_16	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163457_17	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163457_18	UniRef90_D4M593	231.0	0	Phage head-tail adaptor, putative, SPP1 family	N/A
NCBIFam	UHGV-0163457_18	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0163457_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0163457_19	phrog_749	40.2	0.00000000006	N/A	unknown function
PHROG	UHGV-0163457_20	phrog_10	92.3	4.5e-27	major head protein	head and packaging
UniRef90	UHGV-0163457_20	UniRef90_D4M591	703.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-0163457_20	1232452.BAIB02000007_gene1625	478.0	0	Phage capsid family	N/A
Pfam	UHGV-0163457_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0163457_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0163457_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0163457_20	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0163457_21	K01358	154.5	1.4013e-45	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0163457_21	phrog_94	229.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0163457_21	UniRef90_UPI00156EEE56	363.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0163457_21	1232452.BAIB02000007_gene1626	268.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0163457_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0163457_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0163457_21	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0163457_22	phrog_12	67.6	9.6e-20	portal protein	head and packaging
UniRef90	UHGV-0163457_22	UniRef90_UPI00156D5DC9	601.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0163457_22	1232452.BAIB02000007_gene1627	284.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0163457_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0163457_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0163457_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0163457_23	phrog_9	261.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0163457_23	UniRef90_D4M588	1109.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0163457_23	1232452.BAIB02000007_gene1629	531.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0163457_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0163457_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0163457_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0163457_23	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0163457_24	phrog_5110	102.0	3.5e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0163457_24	UniRef90_A0A1C5LZF0	100.0	3.44e-25	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0163457_24	1211817.CCAT010000008_gene938	79.3	3.96e-17	Phage terminase, small subunit	N/A
Pfam	UHGV-0163457_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0163457_24	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163457_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0163457_25	K07451	50.7	0.000000000000034	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0163457_25	phrog_119	80.1	2.9e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163457_25	UniRef90_A0A373MPW5	226.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0163457_25	1232452.BAIB02000007_gene1631	97.8	5.38e-25	HNH nucleases	N/A
Pfam	UHGV-0163457_25	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0163457_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0163457_26	phrog_36	84.7	1.2e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-0163457_26	UniRef90_UPI001899709D	214.0	0	N/A	N/A
eggNOG-mapper	UHGV-0163457_26	658655.HMPREF0988_02569	211.0	0	sigma factor activity	N/A
Pfam	UHGV-0163457_26	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0163457_26	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0163457_26	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0163457_29	K18830	45.5	0.0000000000017	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0163457_29	phrog_8	42.8	0.000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0163457_29	UniRef90_A0A844KFT8	142.0	4.69435e-43	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0163457_29	1048834.TC41_2515	47.0	0.00000742	sequence-specific DNA binding	N/A
Pfam	UHGV-0163457_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0163457_29	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0163457_30	phrog_8684	84.3	2.3e-25	N/A	unknown function
UniRef90	UHGV-0163457_30	UniRef90_A0A373MXN9	307.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0163457_30	457412.RSAG_01162	167.0	0	YopX protein	N/A
Pfam	UHGV-0163457_30	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0163457_30	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0163457_32	phrog_7566	113.5	6.7e-34	N/A	unknown function
eggNOG-mapper	UHGV-0163457_32	97139.C824_00037	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-0163457_33	1196322.A370_05726	65.5	0.000000000000825	N/A	N/A
eggNOG-mapper	UHGV-0163457_36	1235792.C808_00065	247.0	0	N/A	N/A
KOfam	UHGV-0163457_37	K03469	53.5	0.000000000000005	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0163457_37	phrog_531	58.0	1.9e-16	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163457_37	UniRef90_A0A373MPV2	288.0	0	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-0163457_37	665950.HMPREF1025_02551	158.0	0	RNase H	N/A
Pfam	UHGV-0163457_37	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0163457_37	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0163457_37	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0163457_38	phrog_3584	152.8	1.4013e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0163457_38	665950.HMPREF1025_02552	313.0	0	N/A	N/A
structural_annotation	UHGV-0163457_38	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0163457_41	phrog_9607	79.1	6.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0163457_41	1304866.K413DRAFT_4639	90.5	3.88e-20	N/A	N/A
structural_annotation	UHGV-0163457_41	PF02883,MF_00791,NF012200,COG3354	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0163457	Yes	29,113	43	83	1
UHGV-0020694	No	23,780	43	67	1
UHGV-0199239	No	12,765	43	36	1