vOTU vOTU-022345

vOTU: vOTU-022345

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-022345
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00296 → vGENUS-23809 → vOTU-022345
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0167059
Biosample ID	SAMN06164969
Genome length (bp)	30,776 bps
CheckV completeness	82.38% (Medium-quality)
CDS count	43
CDS density	93.86%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus	Total connections	273	Host agreement	94.87
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus	Total connections	26	Host agreement	84.62

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 82.38)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0167059_1	K01448	97.4	1.7e-28	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0167059_1	phrog_435	157.3	0	endolysin	lysis
UniRef90	UHGV-0167059_1	UniRef90_A0A2N5NRG3	350.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0167059_1	411470.RUMGNA_02814	363.0	0	Ami_3	N/A
Pfam	UHGV-0167059_1	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0167059_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0167059_1	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_2	phrog_10091	99.3	3.6e-29	holin	lysis
UniRef90	UHGV-0167059_2	UniRef90_A0A2N5P008	137.0	6.89999e-41	Phage holin	N/A
eggNOG-mapper	UHGV-0167059_2	428127.EUBDOL_01206	115.0	1.59e-32	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0167059_2	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0167059_2	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0167059_2	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0167059_2	COG5546	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0167059_3	608534.GCWU000341_02271	53.1	0.0000000862	N/A	N/A
KOfam	UHGV-0167059_4	K16628	89.2	2.9e-28	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0167059_4	phrog_588	661.3	0	tail fiber protein and host specificity	tail
UniRef90	UHGV-0167059_4	UniRef90_UPI0004634EC1	1276.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0167059_4	411470.RUMGNA_02230	943.0	0	N/A	N/A
Pfam	UHGV-0167059_4	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0167059_4	PF21470	N/A	N/A	Minor structural protein 5-like, C-terminal domain	BppU-like_C
structural_annotation	UHGV-0167059_4	PF14594,PF08931,PF13895,TIGR01665,TIGR04488,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_5	phrog_202	334.0	0	distal tail protein Dit	tail
UniRef90	UHGV-0167059_5	UniRef90_UPI001186A0C2	934.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0167059_5	411470.RUMGNA_02229	754.0	0	N/A	N/A
Pfam	UHGV-0167059_5	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0167059_5	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0167059_5	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0167059_5	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
KOfam	UHGV-0167059_6	K10421	40.0	0.000000000022	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0167059_6	phrog_167	379.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0167059_6	UniRef90_A0A3E4V829	1714.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0167059_6	1232453.BAIF02000028_gene2732	813.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0167059_6	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
Pfam	UHGV-0167059_6	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
NCBIFam	UHGV-0167059_6	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0167059_6	COG3953	N/A	N/A	SLT domain protein	N/A
structural_annotation	UHGV-0167059_6	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_7	phrog_709	141.0	4.1002e-42	N/A	unknown function
UniRef90	UHGV-0167059_7	UniRef90_A0A0D6DV15	128.0	4.29e-36	Prophage pi2 protein 40	N/A
eggNOG-mapper	UHGV-0167059_7	1232453.BAIF02000028_gene2730	177.0	0	N/A	N/A
structural_annotation	UHGV-0167059_7	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_8	phrog_88	152.9	1.4013e-45	major tail protein	tail
UniRef90	UHGV-0167059_8	UniRef90_A0A3E4V8A6	356.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0167059_8	1232453.BAIF02000028_gene2729	268.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0167059_8	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0167059_8	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_9	phrog_78	54.6	0.0000000000000023	tail terminator	connector
UniRef90	UHGV-0167059_9	UniRef90_A0A0D6DV47	107.0	2.32e-27	Prophage pi2 protein 38	N/A
eggNOG-mapper	UHGV-0167059_9	272623.L59277	112.0	9.23e-31	N/A	N/A
structural_annotation	UHGV-0167059_9	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_10	phrog_5	41.4	0.000000000039	tail completion or Neck1 protein	connector
UniRef90	UHGV-0167059_10	UniRef90_UPI000465037A	201.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0167059_10	1158604.I591_01763	100.0	8.62e-26	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0167059_10	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0167059_10	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_11	phrog_1951	105.8	2.1e-31	head-tail adaptor	connector
UniRef90	UHGV-0167059_11	UniRef90_UPI001D057432	203.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0167059_11	1232453.BAIF02000028_gene2726	136.0	1.64e-40	N/A	N/A
NCBIFam	UHGV-0167059_11	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0167059_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_12	phrog_2550	86.4	1.7e-25	N/A	unknown function
UniRef90	UHGV-0167059_12	UniRef90_A0A3E3JYI5	114.0	3.05e-31	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0167059_12	1232453.BAIF02000028_gene2725	112.0	3.13e-31	N/A	N/A
structural_annotation	UHGV-0167059_12	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_13	phrog_366	40.1	0.000000000055	tail fiber protein	tail
UniRef90	UHGV-0167059_13	UniRef90_UPI001D05A857	144.0	9.66896e-43	head fiber protein	N/A
eggNOG-mapper	UHGV-0167059_13	1232443.BAIA02000078_gene28	63.2	0.0000000000316	domain, Protein	N/A
Pfam	UHGV-0167059_13	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
COG	UHGV-0167059_13	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0167059_14	phrog_10	177.7	0	major head protein	head and packaging
UniRef90	UHGV-0167059_14	UniRef90_UPI000466EB68	567.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0167059_14	1232453.BAIF02000028_gene2723	428.0	0	capsid protein	N/A
Pfam	UHGV-0167059_14	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0167059_14	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0167059_14	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0167059_14	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0167059_15	K06904	161.3	0	N/A	N/A
PHROG	UHGV-0167059_15	phrog_80	184.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0167059_15	UniRef90_A0A3E4V855	356.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0167059_15	1232453.BAIF02000028_gene2722	302.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0167059_15	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0167059_15	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0167059_15	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0167059_15	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_16	phrog_12	165.9	0	portal protein	head and packaging
UniRef90	UHGV-0167059_16	UniRef90_A0A3E4V862	782.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0167059_16	1232453.BAIF02000028_gene2721	627.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0167059_16	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0167059_16	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0167059_16	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0167059_16	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_18	phrog_9	295.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0167059_18	UniRef90_A0A3E4V817	1125.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0167059_18	1232453.BAIF02000028_gene2720	1063.0	0	Phage Terminase	N/A
Pfam	UHGV-0167059_18	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0167059_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0167059_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0167059_18	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_19	phrog_361	97.6	1.1e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0167059_19	UniRef90_UPI001D0DE0A6	181.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0167059_19	1158604.I591_01771	185.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0167059_19	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0167059_19	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0167059_19	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0167059_20	PF04320,MF_00360,NF008333,COG3171	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_21	phrog_119	83.4	3.2e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0167059_21	UniRef90_A0A3E4V813	201.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0167059_21	1232453.BAIF02000028_gene2717	139.0	3.14998e-41	HNH nucleases	N/A
COG	UHGV-0167059_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0167059_22	phrog_36	50.9	0.000000000000031	transcriptional regulator	transcription regulation
UniRef90	UHGV-0167059_22	UniRef90_A0A7X4ZQ48	134.0	7.49e-38	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0167059_22	1235792.C808_05360	124.0	7.79e-35	N/A	N/A
structural_annotation	UHGV-0167059_22	PF02996	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0167059_24	411470.RUMGNA_02203	243.0	0	N/A	N/A
PHROG	UHGV-0167059_26	phrog_15198	41.5	2.2e-21	N/A	unknown function
UniRef90	UHGV-0167059_26	UniRef90_UPI001D04EA1D	255.0	0	N/A	N/A
eggNOG-mapper	UHGV-0167059_26	658655.HMPREF0988_00863	52.4	0.00000378	N/A	N/A
Pfam	UHGV-0167059_26	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0167059_26	PF04448	N/A	N/A	N/A	N/A
KOfam	UHGV-0167059_31	K00390	97.0	7.9e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0167059_31	phrog_424	124.7	6.3e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0167059_31	UniRef90_A0A6N3DEG0	547.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0167059_31	1232452.BAIB02000007_gene1640	455.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0167059_31	BrxP_00001	62.6	6.9e-20	BrxP	BREX
Pfam	UHGV-0167059_31	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0167059_31	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0167059_31	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0167059_32	NF041290	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_33	phrog_23374	61.3	1.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0167059_33	1256908.HMPREF0373_00664	74.3	6.69e-17	N/A	N/A
PHROG	UHGV-0167059_35	phrog_8841	622.8	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0167059_35	UniRef90_UPI00156EF603	1129.0	0	N/A	N/A
eggNOG-mapper	UHGV-0167059_35	476272.RUMHYD_01742	838.0	0	N/A	N/A
Pfam	UHGV-0167059_35	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0167059_35	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0167059_35	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0167059_35	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0167059_36	K02316	70.0	3.9e-20	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0167059_36	phrog_11992	173.3	0	N/A	unknown function
UniRef90	UHGV-0167059_36	UniRef90_UPI00156FEB22	332.0	0	CHC2 zinc finger domain-containing protein	N/A
eggNOG-mapper	UHGV-0167059_36	1304866.K413DRAFT_0824	209.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0167059_36	drt-UG29	56.8	2.4e-16	DRT	DRT
Pfam	UHGV-0167059_36	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0167059_36	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0167059_36	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_37	phrog_3490	143.6	1.00053e-42	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0167059_37	UniRef90_A0A1C5UKT4	270.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0167059_37	658655.HMPREF0988_02583	254.0	0	ERCC4 domain	N/A
Pfam	UHGV-0167059_37	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0167059_37	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0167059_38	K03111	127.0	2.5e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0167059_38	phrog_44	142.5	2.59941e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0167059_38	UniRef90_A0A1C5QS41	192.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0167059_38	411460.RUMTOR_02067	182.0	0	N/A	N/A
Pfam	UHGV-0167059_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0167059_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0167059_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0167059_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0167059_38	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_39	phrog_155	89.5	4.3e-26	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0167059_39	UniRef90_A0A6N2RMY2	295.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0167059_39	1484479.DI14_04910	91.3	1.38e-19	ERF superfamily	N/A
Pfam	UHGV-0167059_39	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0167059_39	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0167059_41	phrog_30234	94.2	7.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-0167059_41	411461.DORFOR_00021	55.5	0.00000000215	N/A	N/A
PHROG	UHGV-0167059_43	phrog_7964	197.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0167059_43	411470.RUMGNA_02189	152.0	3.92364e-44	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0167059_43	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0167059_43	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0167059_43	NF007499	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0167059	Yes	30,776	43	82	1
UHGV-1474318	No	30,776	43	82	1
UHGV-1444784	No	24,817	43	66	1
UHGV-0315153	No	24,737	43	66	1