vOTU vOTU-022363

vOTU: vOTU-022363

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-022363
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Duodenibacillus → Duodenibacillus massiliensis
Taxonomy (UHGV)	vFAM-00045 → vSUBFAM-00741 → vGENUS-00694 → vOTU-022363
Host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Duodenibacillus → Duodenibacillus massiliensis
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0282059
Biosample ID	N/A
Genome length (bp)	35,714 bps
CheckV completeness	85.16% (Medium-quality)
CDS count	54
CDS density	94.10%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Duodenibacillus → Duodenibacillus massiliensis	Total connections	46	Host agreement	95.65
PHIST-predicted host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Duodenibacillus → Duodenibacillus massiliensis	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 85.16)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0282059_1	phrog_253	45.2	0.0000000000018	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0282059_1	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
KOfam	UHGV-0282059_2	K03111	151.8	5.60519e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0282059_2	phrog_44	130.9	9.5e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0282059_2	UniRef90_UPI001903C501	107.0	5.26e-27	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0282059_2	75379.Tint_0071	100.0	1.1e-24	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0282059_2	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0282059_2	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0282059_2	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0282059_2	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0282059_2	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_3	phrog_2324	145.9	1.49939e-43	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0282059_3	UniRef90_A0A6J5SIA8	127.0	2.3e-33	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-0282059_3	1209989.TepiRe1_1126	105.0	4.49e-25	ERF superfamily	N/A
Pfam	UHGV-0282059_3	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0282059_3	PF04404,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_7	phrog_270	44.9	0.0000000000025	replication initiation protein	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0282059_7	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
PHROG	UHGV-0282059_8	phrog_270	45.3	0.0000000000013	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0282059_8	1203554.HMPREF1476_00237	105.0	1.35e-23	Helix-turn-helix domain	N/A
Pfam	UHGV-0282059_8	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0282059_8	COG0640	N/A	N/A	DNA-binding transcriptional regulator, ArsR family	N/A
structural_annotation	UHGV-0282059_8	PF10007,MF_01909,NF040939,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-0282059_10	K17680	139.2	2.59997e-41	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0282059_10	phrog_5482	168.7	0	N/A	unknown function
UniRef90	UHGV-0282059_10	UniRef90_A0A643FF24	193.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0282059_10	398578.Daci_1933	179.0	0	DnaB-like helicase C terminal domain	N/A
Pfam	UHGV-0282059_10	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0282059_10	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0282059_10	PF03796,MF_04154,NF004109,COG0305	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0282059_13	COG3201	N/A	N/A	N/A	N/A
KOfam	UHGV-0282059_16	K01160	45.4	0.0000000000021	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0282059_16	phrog_140	122.7	2.3e-36	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0282059_16	UniRef90_A0A3B9Q6M1	106.0	1.24e-26	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0282059_16	279238.Saro_3008	95.5	2.79e-23	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0282059_16	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0282059_16	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0282059_16	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0282059_17	PF06530,NF008895,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-0282059_18	K03497	53.4	0.0000000000000059	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0282059_18	phrog_498	218.6	0	DNA methyltransferase	other
UniRef90	UHGV-0282059_18	UniRef90_K1JXY7	261.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0282059_18	742823.HMPREF9465_00951	261.0	0	ParB-like nuclease domain	N/A
PADLOC	UHGV-0282059_18	MTase_II_00015	173.5	0	Type II methyltransferase	RM
Pfam	UHGV-0282059_18	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0282059_18	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-0282059_19	phrog_309	53.5	0.0000000000000013	terminase small subunit	head and packaging
UniRef90	UHGV-0282059_19	UniRef90_UPI001F4FD8EF	127.0	8.71e-36	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0282059_19	742823.HMPREF9465_00949	137.0	6.01e-40	N/A	N/A
KOfam	UHGV-0282059_20	K06909	367.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0282059_20	phrog_3717	247.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0282059_20	UniRef90_A0A139K4Q1	570.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0282059_20	556268.OFAG_00321	468.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-0282059_20	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0282059_20	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0282059_20	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0282059_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
KOfam	UHGV-0282059_21	K09961	336.4	0	N/A	N/A
PHROG	UHGV-0282059_21	phrog_146	275.9	0	portal protein	head and packaging
UniRef90	UHGV-0282059_21	UniRef90_UPI001D0BAEDD	331.0	0	N/A	N/A
eggNOG-mapper	UHGV-0282059_21	1408428.JNJP01000012_gene1113	330.0	0	N/A	N/A
Pfam	UHGV-0282059_21	PF06381	N/A	N/A	Anti-CBASS protein Acb1-like	Abc1-like
COG	UHGV-0282059_21	COG3567	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0282059_21	PF06381,MF_04135,TIGR01555,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_22	phrog_324	172.5	0	head morphogenesis	head and packaging
UniRef90	UHGV-0282059_22	UniRef90_A0A1Y4CYL3	198.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0282059_22	1408428.JNJP01000012_gene1114	221.0	0	protein homolog of phage Mu protein gp30	N/A
Pfam	UHGV-0282059_22	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0282059_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0282059_22	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-0282059_23	K09960	274.3	0	N/A	N/A
PHROG	UHGV-0282059_23	phrog_2229	313.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0282059_23	UniRef90_UPI001E52763D	235.0	0	N/A	N/A
eggNOG-mapper	UHGV-0282059_23	1408428.JNJP01000012_gene1115	216.0	0	N/A	N/A
Pfam	UHGV-0282059_23	PF09979	N/A	N/A	N/A	DUF2213
COG	UHGV-0282059_23	COG3566	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0282059_23	PF09979,TIGR01543,COG3566	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_24	phrog_2122	72.3	6e-21	minor head protein	head and packaging
eggNOG-mapper	UHGV-0282059_24	1408428.JNJP01000012_gene1116	62.0	0.00000000214	N/A	N/A
PHROG	UHGV-0282059_25	phrog_264	161.5	0	major head protein	head and packaging
UniRef90	UHGV-0282059_25	UniRef90_UPI0010350299	265.0	0	N/A	N/A
eggNOG-mapper	UHGV-0282059_25	1205683.CAKR01000013_gene1189	268.0	0	Protein conserved in bacteria	N/A
Pfam	UHGV-0282059_25	PF09950	N/A	N/A	N/A	DUF2184
COG	UHGV-0282059_25	COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0282059_25	PF09950,MF_04119,NF041155,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_27	phrog_302	73.7	2.2e-21	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0282059_27	469610.HMPREF0189_01191	99.4	1.05e-24	N/A	N/A
Pfam	UHGV-0282059_27	PF13262	N/A	N/A	N/A	DUF4054
structural_annotation	UHGV-0282059_27	PF13262	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_28	phrog_222	102.5	4.1e-30	tail protein	tail
UniRef90	UHGV-0282059_28	UniRef90_A0A6J5RNL9	59.7	0.0000000229	Bacteriophage HK97-gp10, putative tail-component	N/A
eggNOG-mapper	UHGV-0282059_28	1205683.CAKR01000013_gene1186	71.6	0.000000000000127	N/A	N/A
PHROG	UHGV-0282059_29	phrog_1912	46.6	0.00000000000052	head protein	head and packaging
eggNOG-mapper	UHGV-0282059_29	762966.HMPREF9439_01040	103.0	4.16e-26	N/A	N/A
structural_annotation	UHGV-0282059_29	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_30	phrog_1876	78.7	6.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0282059_30	762966.HMPREF9439_01041	106.0	1.42e-26	N/A	N/A
structural_annotation	UHGV-0282059_30	PF16807	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_31	phrog_205	161.8	0	virion structural protein	head and packaging
UniRef90	UHGV-0282059_31	UniRef90_UPI0013F5A4D1	510.0	0	N/A	N/A
eggNOG-mapper	UHGV-0282059_31	742823.HMPREF9465_00935	496.0	0	N/A	N/A
Pfam	UHGV-0282059_31	PF11863	N/A	N/A	N/A	DUF3383
structural_annotation	UHGV-0282059_31	PF11863,COG4386	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_32	phrog_1964	101.8	5.8e-30	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0282059_32	762966.HMPREF9439_01045	101.0	1.82e-25	N/A	N/A
structural_annotation	UHGV-0282059_32	PF11681,TIGR01603,COG3157	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_33	phrog_1932	52.6	0.000000000000005	tail assembly chaperone	tail
eggNOG-mapper	UHGV-0282059_33	742823.HMPREF9465_00933	90.5	2.24e-21	N/A	N/A
Pfam	UHGV-0282059_33	PF21822	N/A	N/A	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
structural_annotation	UHGV-0282059_33	PF21822	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_34	phrog_58	58.3	8.9e-17	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0282059_34	742823.HMPREF9465_00932	135.0	7.08e-31	domain protein	N/A
COG	UHGV-0282059_34	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_35	phrog_1830	65.9	5.3e-19	N/A	unknown function
UniRef90	UHGV-0282059_35	UniRef90_F3QJE7	85.9	6.34e-18	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0282059_35	469610.HMPREF0189_01201	90.5	1.76e-20	N/A	N/A
structural_annotation	UHGV-0282059_35	PF21821,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_36	phrog_349	40.1	0.000000000055	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0282059_36	1236501.BAJU01000020_gene2009	49.3	0.00000317	N/A	N/A
PHROG	UHGV-0282059_37	phrog_196	106.0	4.7e-31	virion structural protein	head and packaging
UniRef90	UHGV-0282059_37	UniRef90_F3QJE9	230.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0282059_37	469610.HMPREF0189_01203	244.0	0	N/A	N/A
structural_annotation	UHGV-0282059_37	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_38	phrog_3216	53.2	0.000000000000005	baseplate assembly protein	tail
UniRef90	UHGV-0282059_38	UniRef90_K1JIF5	219.0	0	Phage_spike domain-containing protein	N/A
eggNOG-mapper	UHGV-0282059_38	742823.HMPREF9465_00928	219.0	0	Baseplate assembly protein	N/A
Pfam	UHGV-0282059_38	PF18715	N/A	N/A	Phage spike trimer	Phage_spike
COG	UHGV-0282059_38	COG4540	N/A	N/A	Phage P2 baseplate assembly protein gpV	N/A
structural_annotation	UHGV-0282059_38	PF18352,TIGR01644,COG4384	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_39	phrog_120	61.2	1.6e-17	baseplate protein	tail
eggNOG-mapper	UHGV-0282059_39	1203554.HMPREF1476_01519	74.3	0.00000000000000154	N/A	N/A
structural_annotation	UHGV-0282059_39	PF10761,TIGR03357,COG3628	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_40	phrog_6	159.8	0	baseplate protein	tail
UniRef90	UHGV-0282059_40	UniRef90_K1KI67	539.0	0	Baseplate_J domain-containing protein	N/A
eggNOG-mapper	UHGV-0282059_40	742823.HMPREF9465_00927	539.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0282059_40	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0282059_40	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0282059_40	PF04865,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_41	phrog_587	92.4	3.8e-28	structural protein	head and packaging
UniRef90	UHGV-0282059_41	UniRef90_UPI0013F5E2B1	250.0	0	N/A	N/A
eggNOG-mapper	UHGV-0282059_41	742823.HMPREF9465_00926	250.0	0	N/A	N/A
Pfam	UHGV-0282059_41	PF11041	N/A	N/A	N/A	DUF2612
structural_annotation	UHGV-0282059_41	PF11041,TIGR02242,COG3948	N/A	N/A	N/A	N/A
UniRef90	UHGV-0282059_42	UniRef90_UPI0013F616D1	413.0	0	short-chain fatty acid transporter	N/A
eggNOG-mapper	UHGV-0282059_42	762966.HMPREF9439_01055	320.0	0	tail collar domain protein	N/A
COG	UHGV-0282059_42	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0282059_42	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_43	phrog_1419	57.4	1.5e-16	tail protein	tail
eggNOG-mapper	UHGV-0282059_43	742823.HMPREF9465_00923	127.0	2.86e-28	Membrane	N/A
COG	UHGV-0282059_43	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0282059_44	phrog_19618	88.2	3.1e-26	tail collar protein	tail
UniRef90	UHGV-0282059_44	UniRef90_UPI000DEA0D44	129.0	1.17e-34	phage tail protein	N/A
eggNOG-mapper	UHGV-0282059_44	556269.ACDQ01000009_gene1944	117.0	2.15e-28	Phage Tail Collar Domain	N/A
Pfam	UHGV-0282059_44	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-0282059_44	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0282059_44	PF07484,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0282059_45	phrog_2143	108.9	4.3e-32	N/A	unknown function
eggNOG-mapper	UHGV-0282059_45	742823.HMPREF9465_00917	157.0	0	N/A	N/A
PHROG	UHGV-0282059_46	phrog_199	69.4	4e-20	holin	lysis
UniRef90	UHGV-0282059_46	UniRef90_UPI000A02732D	288.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0282059_46	742821.HMPREF9464_01076	105.0	2.13e-26	Bacteriophage holin family	N/A
Pfam	UHGV-0282059_46	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0282059_46	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0282059_46	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0282059_46	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0282059_47	K08640	89.5	6e-26	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0282059_47	phrog_894	83.8	2.6e-24	endolysin	lysis
UniRef90	UHGV-0282059_47	UniRef90_A0A3B9QA10	249.0	0	Peptidase_M15_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0282059_47	641832.C3VVT1_9CAUD	90.9	9.53e-22	Peptidase M15	N/A
Pfam	UHGV-0282059_47	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
structural_annotation	UHGV-0282059_47	PF05951,COG3108	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0282059_48	742821.HMPREF9464_01810	50.8	0.000000132	N/A	N/A
UniRef90	UHGV-0282059_54	UniRef90_UPI001F3219F6	370.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0282059_54	742823.HMPREF9465_01974	263.0	0	N/A	N/A
COG	UHGV-0282059_54	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0282059_54	MF_00950,TIGR00405,COG5475	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0282059	Yes	35,714	56	85	1
UHGV-0168163	No	35,238	56	84	1
UHGV-0168772	No	10,178	55	23	1