vOTU vOTU-022387

vOTU: vOTU-022387

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-022387
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00005 → vGENUS-00517 → vOTU-022387
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0344352
Biosample ID	SAMN13288295
Genome length (bp)	28,761 bps
CheckV completeness	71.69% (Medium-quality)
CDS count	55
CDS density	91.61%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	248	Host agreement	72.58
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales	Total connections	4	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 71.69)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0344352_1	UniRef90_A0A810PSE6	131.0	4.89e-38	bPH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0344352_1	1514668.JOOA01000002_gene2950	105.0	1.83e-28	Bacterial PH domain	N/A
Pfam	UHGV-0344352_1	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
PHROG	UHGV-0344352_3	phrog_885	86.5	2.7e-25	major tail protein	tail
UniRef90	UHGV-0344352_3	UniRef90_A0A843J9F0	207.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0344352_3	1504822.CCNO01000012_gene492	241.0	0	N/A	N/A
structural_annotation	UHGV-0344352_3	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0344352_4	phrog_17405	44.7	0.0000000000021	head protein	head and packaging
structural_annotation	UHGV-0344352_4	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0344352_5	phrog_17977	79.4	3.1e-23	N/A	unknown function
UniRef90	UHGV-0344352_5	UniRef90_A0A285PT57	95.9	2.94e-23	Phage head-tail joining protein	N/A
structural_annotation	UHGV-0344352_5	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0344352_7	phrog_544	123.4	1.9e-36	major head protein	head and packaging
UniRef90	UHGV-0344352_7	UniRef90_A0A1C6B5R0	333.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0344352_7	476272.RUMHYD_01776	314.0	0	N/A	N/A
structural_annotation	UHGV-0344352_7	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0344352_8	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0344352_9	phrog_5	69.9	4.7e-20	tail completion or Neck1 protein	connector
UniRef90	UHGV-0344352_9	UniRef90_A0A4D7AJK9	187.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0344352_9	386415.NT01CX_2170	104.0	5.91e-27	N/A	N/A
Pfam	UHGV-0344352_9	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0344352_9	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0344352_11	phrog_115	115.3	2.7e-34	minor head protein	head and packaging
UniRef90	UHGV-0344352_11	UniRef90_A0A810PSD3	986.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0344352_11	1111121.HMPREF1247_0797	186.0	0	cell adhesion	N/A
Pfam	UHGV-0344352_11	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0344352_11	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0344352_11	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0344352_11	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0344352_12	phrog_64	145.3	1.49939e-43	portal protein	head and packaging
UniRef90	UHGV-0344352_12	UniRef90_UPI0018A8A301	545.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0344352_12	1235800.C819_02239	79.0	0.000000000000479	phage portal protein, SPP1	N/A
Pfam	UHGV-0344352_12	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0344352_12	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0344352_13	K06909	126.1	3.7e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0344352_13	phrog_10250	182.9	0	N/A	unknown function
UniRef90	UHGV-0344352_13	UniRef90_A0A3D3Y0N9	705.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0344352_13	1226322.HMPREF1545_00043	595.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0344352_13	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0344352_13	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0344352_13	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0344352_13	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0344352_13	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0344352_14	phrog_419	100.6	1.9e-29	N/A	unknown function
UniRef90	UHGV-0344352_14	UniRef90_A6MAI4	153.0	0	Gp119	N/A
eggNOG-mapper	UHGV-0344352_14	388452.A6MAI4_9CAUD	153.0	0	N/A	N/A
structural_annotation	UHGV-0344352_14	PF14083	N/A	N/A	N/A	N/A
KOfam	UHGV-0344352_16	K07319	120.8	1.2e-35	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0344352_16	phrog_498	434.5	0	DNA methyltransferase	other
UniRef90	UHGV-0344352_16	UniRef90_A0A810Q3Z7	446.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0344352_16	1423758.BN55_01455	413.0	0	DNA methylase	N/A
PADLOC	UHGV-0344352_16	MTase_II_00015	234.7	0	Type II methyltransferase	RM
Pfam	UHGV-0344352_16	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0344352_16	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0344352_16	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0344352_16	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0344352_18	693746.OBV_18010	125.0	1.34e-34	N/A	N/A
structural_annotation	UHGV-0344352_18	TIGR01636	N/A	N/A	N/A	N/A
Pfam	UHGV-0344352_22	PF12773	N/A	N/A	Double zinc ribbon	DZR
UniRef90	UHGV-0344352_24	UniRef90_A0A8D9PDQ6	140.0	2.52934e-42	Restriction alleviation protein	N/A
Pfam	UHGV-0344352_24	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0344352_24	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0344352_27	phrog_22529	118.3	4e-35	N/A	unknown function
UniRef90	UHGV-0344352_27	UniRef90_A0A810Q1V0	290.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0344352_27	411463.EUBVEN_00667	105.0	8.59e-26	3D domain	N/A
Pfam	UHGV-0344352_27	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0344352_27	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0344352_27	PF06725,NF040670,COG3584	N/A	N/A	N/A	N/A
KOfam	UHGV-0344352_29	K01160	72.9	7.4e-21	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0344352_29	phrog_34	63.8	3.2e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0344352_29	UniRef90_UPI0018ABA1B6	157.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0344352_29	561177.ANHYDRO_01396	114.0	6.93e-31	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0344352_29	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0344352_29	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0344352_29	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0344352_31	TIGR00122,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0344352_32	phrog_111	148.6	2.94273e-44	DNA methyltransferase	other
UniRef90	UHGV-0344352_32	UniRef90_A0A1L5KS67	193.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
eggNOG-mapper	UHGV-0344352_32	445972.ANACOL_03344	181.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0344352_32	oMTase_00015	167.1	0	orphan methyltransferase	RM
Pfam	UHGV-0344352_32	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0344352_32	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0344352_33	K00558	158.8	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0344352_33	phrog_116	191.5	0	DNA methyltransferase	other
UniRef90	UHGV-0344352_33	UniRef90_A0A0F0CBC0	366.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0344352_33	755731.Clo1100_3519	337.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0344352_33	oMTase_00004	203.4	0	orphan methyltransferase	RM
Pfam	UHGV-0344352_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0344352_33	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0344352_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0344352_34	phrog_15768	80.0	2.5e-24	N/A	unknown function
UniRef90	UHGV-0344352_34	UniRef90_A0A8D9PDU3	134.0	1.28e-35	N/A	N/A
eggNOG-mapper	UHGV-0344352_34	203119.Cthe_2466	89.4	3.8e-18	N/A	N/A
Pfam	UHGV-0344352_34	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0344352_34	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0344352_35	K03111	115.4	7.9e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0344352_35	phrog_44	116.8	2e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0344352_35	UniRef90_A0A810PUK9	234.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0344352_35	1203606.HMPREF1526_01880	109.0	4.67e-29	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0344352_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0344352_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0344352_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0344352_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0344352_35	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0344352_37	phrog_7566	100.0	1.3e-29	N/A	unknown function
UniRef90	UHGV-0344352_37	UniRef90_A0A8D9UHC0	161.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0344352_37	693746.OBV_24070	128.0	2.96e-37	N/A	N/A
PHROG	UHGV-0344352_38	phrog_72	55.5	4.8e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0344352_38	UniRef90_A0A8D9PDS2	175.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0344352_38	445972.ANACOL_01825	144.0	4.06993e-41	N/A	N/A
structural_annotation	UHGV-0344352_38	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0344352_39	phrog_155	89.3	5.2e-26	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0344352_39	UniRef90_A0A1C6J8G0	261.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-0344352_39	1268072.PSAB_05935	177.0	0	ERF superfamily	N/A
Pfam	UHGV-0344352_39	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0344352_39	PF04404,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0344352_41	PF00412	N/A	N/A	N/A	N/A
UniRef90	UHGV-0344352_44	UniRef90_A0A8D9PDM8	87.0	3.53e-21	Pyocin activator protein	N/A
structural_annotation	UHGV-0344352_44	PF11112,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0344352_45	K22300	45.8	0.0000000000013	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0344352_45	phrog_8	42.8	0.000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0344352_45	UniRef90_A0A810PZI0	127.0	2.58e-37	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0344352_45	697329.Rumal_2813	57.4	0.00000000332	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0344352_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0344352_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0344352_46	phrog_8	40.5	0.000000000062	transcriptional regulator	transcription regulation
UniRef90	UHGV-0344352_46	UniRef90_A0A810Q1T1	160.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0344352_46	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0344352_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0344352_46	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0344352_47	phrog_585	94.7	8e-28	N/A	unknown function
UniRef90	UHGV-0344352_47	UniRef90_UPI001F52F0FC	82.8	1.84e-17	N/A	N/A
eggNOG-mapper	UHGV-0344352_47	1423755.BAML01000004_gene410	78.2	1.53e-16	N/A	N/A
Pfam	UHGV-0344352_47	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0344352_47	PF10711,TIGR04176,COG1695	N/A	N/A	N/A	N/A
UniRef90	UHGV-0344352_50	UniRef90_A0A810PZB1	351.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0344352_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0344352_50	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0344352_51	K14059	160.1	0	int; integrase	N/A
PHROG	UHGV-0344352_51	phrog_1	163.2	0	integrase	integration and excision
UniRef90	UHGV-0344352_51	UniRef90_A0A810Q0L1	662.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0344352_51	445972.ANACOL_01797	282.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0344352_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0344352_51	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0344352_51	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0344352_52	1232443.BAIA02000078_gene6	57.4	0.00000000473	N/A	N/A
structural_annotation	UHGV-0344352_53	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0344352_54	phrog_20016	180.3	0	N/A	unknown function
UniRef90	UHGV-0344352_54	UniRef90_A0A285PT46	186.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0344352_54	397290.C810_05214	161.0	0	N/A	N/A
structural_annotation	UHGV-0344352_54	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0344352_55	phrog_16490	133.3	2.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-0344352_55	1408437.JNJN01000043_gene803	159.0	1.4013e-45	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0344352	Yes	28,761	53	72	1
UHGV-0169445	No	14,814	54	36	1
UHGV-1554230	No	11,220	55	27	1