vOTU vOTU-022480

vOTU: vOTU-022480

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-022480
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vGENUS-00408 → vOTU-022480
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1537565
Biosample ID	N/A
Genome length (bp)	31,308 bps
CheckV completeness	88.33% (Medium-quality)
CDS count	54
CDS density	93.21%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	279	Host agreement	94.98
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	316	Host agreement	97.78

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1537565_1	K14059	142.7	4.90034e-42	int; integrase	N/A
PHROG	UHGV-1537565_1	phrog_1	127.6	1.3e-37	integrase	integration and excision
UniRef90	UHGV-1537565_1	UniRef90_A0A367GI93	251.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1537565_1	1519439.JPJG01000011_gene49	107.0	3.41e-24	Phage integrase family	N/A
Pfam	UHGV-1537565_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
COG	UHGV-1537565_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
KOfam	UHGV-1537565_2	K07451	55.9	4.9e-16	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1537565_2	phrog_589	57.1	3.2e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1537565_2	UniRef90_A0A7M2RF22	416.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1537565_2	386415.NT01CX_1757	351.0	0	HNH endonuclease	N/A
Pfam	UHGV-1537565_2	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1537565_2	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1537565_2	PF01844,NF040563,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_3	phrog_87	43.9	0.0000000000029	metallo-protease	other
UniRef90	UHGV-1537565_3	UniRef90_A0A329UQ57	207.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-1537565_3	1007096.BAGW01000011_gene2354	72.8	0.0000000000000229	IrrE N-terminal-like domain	N/A
COG	UHGV-1537565_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1537565_3	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_4	phrog_8	60.8	2.9e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1537565_4	UniRef90_A0A372V3Y4	96.7	1.09e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1537565_4	411483.FAEPRAA2165_00756	97.4	1.07e-23	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1537565_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1537565_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1537565_4	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1537565_5	UniRef90_A0A372V3V8	89.7	2.43e-22	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-1537565_5	PF10078,NF040507,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_17	phrog_3584	205.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1537565_17	UniRef90_UPI001C02C5E0	157.0	3.40516e-43	N/A	N/A
eggNOG-mapper	UHGV-1537565_17	718252.FP2_16510	148.0	2e-40	N/A	N/A
structural_annotation	UHGV-1537565_17	PF01446	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1537565_22	537013.CLOSTMETH_03718	63.5	0.000000000125	N/A	N/A
structural_annotation	UHGV-1537565_22	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_23	phrog_338	60.7	3.1e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1537565_23	UniRef90_UPI0015F33F36	174.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1537565_23	748224.HMPREF9436_01465	175.0	0	N/A	N/A
PHROG	UHGV-1537565_24	phrog_1066	57.2	2.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-1537565_24	445975.COLSTE_02166	75.5	0.00000000000000158	N/A	N/A
AcrCatalog	UHGV-1537565_24	cluster_154855	71.6	1.9e-18	NA	N/A
PHROG	UHGV-1537565_25	phrog_9	136.6	1.90001e-40	terminase large subunit	head and packaging
UniRef90	UHGV-1537565_25	UniRef90_UPI001D0087E2	453.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1537565_25	1410630.JNKP01000001_gene1822	622.0	0	phage terminase, large subunit	N/A
COG	UHGV-1537565_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1537565_25	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_26	phrog_104	213.1	0	portal protein	head and packaging
UniRef90	UHGV-1537565_26	UniRef90_A0A3E2U200	750.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1537565_26	748224.HMPREF9436_01468	764.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1537565_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1537565_26	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_27	phrog_193	122.2	7.8e-36	head maturation protease	head and packaging
UniRef90	UHGV-1537565_27	UniRef90_A0A6N8H118	356.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1537565_27	748224.HMPREF9436_01469	395.0	0	N/A	N/A
COG	UHGV-1537565_27	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
PHROG	UHGV-1537565_29	phrog_478	119.7	1.4e-35	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1537565_29	UniRef90_A0A373Q857	164.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1537565_29	1111121.HMPREF1247_0834	95.1	2.4e-23	N/A	N/A
PHROG	UHGV-1537565_30	phrog_774	45.1	0.00000000000068	N/A	unknown function
eggNOG-mapper	UHGV-1537565_30	1042156.CXIVA_01820	56.2	0.0000000034	N/A	N/A
PHROG	UHGV-1537565_31	phrog_194	83.8	2.6e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-1537565_31	UniRef90_D4K444	156.0	2.8026e-45	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1537565_31	748224.HMPREF9436_03336	158.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-1537565_31	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1537565_31	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_32	phrog_10	125.9	3.8e-37	major head protein	head and packaging
UniRef90	UHGV-1537565_32	UniRef90_A0A1Y4TJU9	445.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1537565_32	748224.HMPREF9436_00690	388.0	0	Phage capsid family	N/A
Pfam	UHGV-1537565_32	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1537565_32	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1537565_32	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1537565_32	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_34	phrog_137	52.1	0.0000000000000082	head-tail adaptor Ad1	connector
UniRef90	UHGV-1537565_34	UniRef90_E2ZGA8	158.0	0	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-1537565_34	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_35	phrog_501	71.6	1.1e-20	head closure Hc1	connector
eggNOG-mapper	UHGV-1537565_35	748224.HMPREF9436_00693	170.0	0	N/A	N/A
structural_annotation	UHGV-1537565_35	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_36	phrog_387	60.3	2.8e-17	neck protein	connector
eggNOG-mapper	UHGV-1537565_36	748224.HMPREF9436_00694	92.0	2.56e-23	N/A	N/A
PHROG	UHGV-1537565_37	phrog_123	65.5	9e-19	tail terminator	connector
UniRef90	UHGV-1537565_37	UniRef90_D2BQF4	84.7	5.4e-19	N/A	N/A
eggNOG-mapper	UHGV-1537565_37	1231377.C426_1732	85.9	3.19e-20	N/A	N/A
structural_annotation	UHGV-1537565_37	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_38	phrog_117	178.5	0	major tail protein	tail
UniRef90	UHGV-1537565_38	UniRef90_A0A1Q6T308	234.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1537565_38	748224.HMPREF9436_00696	217.0	0	domain, Protein	N/A
COG	UHGV-1537565_38	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1537565_38	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_39	phrog_1526	82.2	4.6e-24	N/A	unknown function
UniRef90	UHGV-1537565_39	UniRef90_D2BQF7	67.8	0.000000000000607	N/A	N/A
eggNOG-mapper	UHGV-1537565_39	879308.HMPREF9130_1240	80.5	1.24e-18	N/A	N/A
PHROG	UHGV-1537565_40	phrog_1633	72.6	2.3e-21	N/A	unknown function
UniRef90	UHGV-1537565_40	UniRef90_UPI000986795C	73.2	0.0000000000000253	N/A	N/A
eggNOG-mapper	UHGV-1537565_40	883110.HMPREF9260_00651	62.8	0.0000000000475	N/A	N/A
structural_annotation	UHGV-1537565_40	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_41	phrog_6900	262.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1537565_41	UniRef90_A0A1C5MMN2	394.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1537565_41	1280698.AUJS01000007_gene1047	386.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1537565_41	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1537565_41	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_42	phrog_1194	42.4	0.0000000000098	N/A	unknown function
eggNOG-mapper	UHGV-1537565_42	411471.SUBVAR_06933	101.0	4.4e-26	N/A	N/A
structural_annotation	UHGV-1537565_42	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_43	phrog_18190	74.4	2.8e-35	N/A	unknown function
eggNOG-mapper	UHGV-1537565_43	411471.SUBVAR_06932	311.0	0	N/A	N/A
structural_annotation	UHGV-1537565_43	PF05954,PF00629,PF03424,NF033848,NF033675,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_44	phrog_18444	80.6	1.1e-23	N/A	unknown function
UniRef90	UHGV-1537565_44	UniRef90_UPI00156E9A45	59.7	0.000000000177	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-1537565_44	1294142.CINTURNW_1707	60.8	0.0000000000104	N/A	N/A
structural_annotation	UHGV-1537565_46	PF12245	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1537565_47	428125.CLOLEP_01433	53.1	0.0000000684	N/A	N/A
PHROG	UHGV-1537565_48	phrog_13589	182.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1537565_48	428125.CLOLEP_01434	235.0	0	N/A	N/A
PHROG	UHGV-1537565_50	phrog_19111	57.7	1.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-1537565_50	1121335.Clst_0408	82.4	0.0000000000000141	ATPase involved in DNA repair	N/A
COG	UHGV-1537565_50	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-1537565_51	phrog_6465	67.7	7.9e-21	tail protein	tail
UniRef90	UHGV-1537565_51	UniRef90_G4Q8U0	70.1	0.0000000000927	Side tail fiber protein from lambdoid prophage Rac	N/A
eggNOG-mapper	UHGV-1537565_51	508419.F8J176_9CAUD	118.0	3.37e-27	peptidoglycan catabolic process	N/A
Pfam	UHGV-1537565_51	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
Pfam	UHGV-1537565_51	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
KOfam	UHGV-1537565_52	K07273	192.6	0	acm; lysozyme	N/A
PHROG	UHGV-1537565_52	phrog_291	155.1	0	endolysin	lysis
UniRef90	UHGV-1537565_52	UniRef90_A0A2V2FJT5	462.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1537565_52	411471.SUBVAR_05532	208.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1537565_52	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-1537565_52	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1537565_52	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1537565_52	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1537565_53	phrog_4105	95.5	3.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-1537565_53	657322.FPR_27220	139.0	2.56998e-41	N/A	N/A
PHROG	UHGV-1537565_54	phrog_1129	62.8	4.1e-18	holin	lysis
UniRef90	UHGV-1537565_54	UniRef90_A0A367FT42	174.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1537565_54	1007096.BAGW01000036_gene2663	115.0	2.34e-32	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1537565_54	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1537565_54	PF06946	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1537565	Yes	31,308	57	88	1
UHGV-1463970	No	22,423	57	63	1
UHGV-0174317	No	12,299	59	35	1