vOTU vOTU-023036

vOTU: vOTU-023036

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-023036
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00089 → vGENUS-00825 → vOTU-023036
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0193997
Biosample ID	N/A
Genome length (bp)	25,600 bps
CheckV completeness	72.21% (Medium-quality)
CDS count	35
CDS density	91.14%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	475	Host agreement	97.47
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	21	Host agreement	95.24

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 72.21)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0193997_1	phrog_16687	82.4	3.3e-24	N/A	unknown function
PHROG	UHGV-0193997_2	phrog_140	87.9	1.3e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0193997_2	UniRef90_A0A373Y8T3	258.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0193997_2	411462.DORLON_00806	200.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0193997_2	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0193997_2	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0193997_2	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_4	phrog_9958	149.2	1.4013e-44	N/A	unknown function
UniRef90	UHGV-0193997_4	UniRef90_A0A356CXW0	289.0	0	N/A	N/A
eggNOG-mapper	UHGV-0193997_4	1160721.RBI_I01591	286.0	0	N/A	N/A
Pfam	UHGV-0193997_4	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0193997_4	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0193997_6	K00390	51.5	5.3e-22	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0193997_6	phrog_424	121.0	6.3e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0193997_6	UniRef90_UPI001899D561	580.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0193997_6	397291.C804_05723	263.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0193997_6	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0193997_6	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0193997_6	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-0193997_8	UniRef90_A0A5R9MHA3	239.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0193997_8	875454.BAEW01000002_gene486	50.8	0.00000361	N/A	N/A
structural_annotation	UHGV-0193997_8	PF07374	N/A	N/A	N/A	N/A
KOfam	UHGV-0193997_9	K09161	143.5	1.3999e-42	N/A	N/A
PHROG	UHGV-0193997_9	phrog_6084	103.9	1.3e-30	N/A	unknown function
UniRef90	UHGV-0193997_9	UniRef90_UPI00189BAEC5	261.0	0	YfbU family protein	N/A
eggNOG-mapper	UHGV-0193997_9	536233.CLO_2529	106.0	8.1e-27	Belongs to the UPF0304 family	N/A
Pfam	UHGV-0193997_9	PF03887	N/A	N/A	YfbU domain	YfbU
NCBIFam	UHGV-0193997_9	NF003936.2	N/A	N/A	YfbU family protein	N/A
COG	UHGV-0193997_9	COG3013	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0193997_9	PF03887,MF_00762,NF003936,COG3013	N/A	N/A	N/A	N/A
KOfam	UHGV-0193997_10	K06909	421.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0193997_10	phrog_18557	159.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0193997_10	UniRef90_A0A1C6IMR2	1097.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0193997_10	411461.DORFOR_01162	663.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0193997_10	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0193997_10	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0193997_10	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0193997_10	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0193997_10	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_11	phrog_533	346.4	0	portal protein	head and packaging
UniRef90	UHGV-0193997_11	UniRef90_R6TDI6	892.0	0	Phage portal protein SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0193997_11	1304866.K413DRAFT_3035	438.0	0	N/A	N/A
structural_annotation	UHGV-0193997_11	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_12	phrog_581	336.7	0	minor head protein	head and packaging
UniRef90	UHGV-0193997_12	UniRef90_R6SXL7	994.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0193997_12	658655.HMPREF0988_02563	412.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0193997_12	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0193997_12	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0193997_12	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0193997_13	PF12305	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_14	phrog_194	104.9	8.9e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-0193997_14	UniRef90_R6U550	372.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0193997_14	742765.HMPREF9457_02126	152.0	6.5861e-44	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0193997_14	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0193997_14	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_15	phrog_544	348.3	0	major head protein	head and packaging
UniRef90	UHGV-0193997_15	UniRef90_R6T873	669.0	0	Major head protein	N/A
eggNOG-mapper	UHGV-0193997_15	936580.HMPREF1516_0718	318.0	0	N/A	N/A
NCBIFam	UHGV-0193997_15	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0193997_15	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_16	phrog_541	91.5	7e-27	head-tail adaptor	connector
UniRef90	UHGV-0193997_16	UniRef90_A0A371AQT0	103.0	4.98e-26	N/A	N/A
eggNOG-mapper	UHGV-0193997_16	1304866.K413DRAFT_3039	97.1	2.48e-24	N/A	N/A
PHROG	UHGV-0193997_17	phrog_3366	76.4	3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0193997_17	1449050.JNLE01000003_gene3887	80.1	8.79e-18	N/A	N/A
Pfam	UHGV-0193997_17	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0193997_17	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_18	phrog_556	123.4	7.7e-37	minor head protein	head and packaging
UniRef90	UHGV-0193997_18	UniRef90_UPI00143BEF55	125.0	3.43e-34	minor capsid protein	N/A
eggNOG-mapper	UHGV-0193997_18	1449050.JNLE01000003_gene3886	107.0	1.28e-27	N/A	N/A
Pfam	UHGV-0193997_18	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0193997_18	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_19	phrog_3266	123.4	1e-36	tail completion	connector
eggNOG-mapper	UHGV-0193997_19	411902.CLOBOL_00130	112.0	1.08e-29	N/A	N/A
structural_annotation	UHGV-0193997_19	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_20	phrog_3099	149.7	1.26117e-44	N/A	unknown function
eggNOG-mapper	UHGV-0193997_20	1160721.RBI_II00532	208.0	0	N/A	N/A
structural_annotation	UHGV-0193997_20	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_21	phrog_11299	177.1	0	N/A	unknown function
structural_annotation	UHGV-0193997_21	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_22	phrog_706	146.9	1.09301e-43	N/A	unknown function
UniRef90	UHGV-0193997_22	UniRef90_UPI001B3C82AE	213.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0193997_22	1449050.JNLE01000003_gene3882	196.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0193997_22	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0193997_22	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_23	phrog_1535	311.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0193997_23	UniRef90_R6TDK7	1273.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0193997_23	1226322.HMPREF1545_00059	399.0	0	tape measure	N/A
COG	UHGV-0193997_23	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0193997_23	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_24	phrog_1194	89.7	2.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-0193997_24	1160721.RBI_II00527	207.0	0	N/A	N/A
structural_annotation	UHGV-0193997_24	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_25	phrog_9680	52.4	2.6e-16	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0193997_25	UniRef90_R5LL83	75.5	0.0000000000271	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-0193997_25	1160721.RBI_II00526	504.0	0	N/A	N/A
structural_annotation	UHGV-0193997_25	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0193997_27	1410617.JHXH01000006_gene232	84.7	0.0000000000000162	N/A	N/A
structural_annotation	UHGV-0193997_27	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_29	phrog_134	41.5	0.000000000018	N/A	unknown function
UniRef90	UHGV-0193997_29	UniRef90_A0A373VFP4	101.0	2.76e-27	XkdX family protein	N/A
eggNOG-mapper	UHGV-0193997_29	1298920.KI911353_gene543	58.2	0.0000000000507	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0193997_29	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0193997_29	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_30	phrog_13256	80.1	1.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0193997_30	1160721.RBI_II00522	93.2	1.79e-24	N/A	N/A
PHROG	UHGV-0193997_31	phrog_1863	58.7	8.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0193997_31	1226322.HMPREF1545_04027	72.4	0.00000000000000111	N/A	N/A
KOfam	UHGV-0193997_32	K07273	221.6	0	acm; lysozyme	N/A
PHROG	UHGV-0193997_32	phrog_291	189.0	0	endolysin	lysis
UniRef90	UHGV-0193997_32	UniRef90_A0A374EPW2	516.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0193997_32	246199.CUS_5914	300.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0193997_32	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0193997_32	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0193997_32	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0193997_32	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
KOfam	UHGV-0193997_33	K22299	55.7	0.0000000000000011	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0193997_33	UniRef90_A0A374ERP2	228.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0193997_33	59374.Fisuc_2499	96.7	2.64e-24	sequence-specific DNA binding	N/A
PADLOC	UHGV-0193997_33	retron_type_VI_hth_cluster2_1	41.7	0.000000000021	N/A	Retron
Pfam	UHGV-0193997_33	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0193997_33	COG1426	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0193997_33	PF13560,MF_00535,NF041951,COG1513	N/A	N/A	N/A	N/A
PHROG	UHGV-0193997_34	phrog_1914	69.7	4.2e-20	N/A	unknown function
UniRef90	UHGV-0193997_34	UniRef90_UPI001A9A7A19	342.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0193997_34	997296.PB1_16109	137.0	9.15e-39	N/A	N/A
Pfam	UHGV-0193997_34	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0193997_34	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0193997_34	PF06114,MF_00745,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0193997_35	K02529	161.0	0	lacI, galR; LacI family transcriptional regulator	N/A
PHROG	UHGV-0193997_35	phrog_11145	86.4	2.8e-25	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0193997_35	UniRef90_A0A7C6IZI1	221.0	0	LacI family transcriptional regulator (Fragment)	N/A
eggNOG-mapper	UHGV-0193997_35	1160721.RBI_II00612	586.0	0	diguanylate cyclase	N/A
Pfam	UHGV-0193997_35	PF13377	N/A	N/A	Periplasmic binding protein-like domain	Peripla_BP_3
COG	UHGV-0193997_35	COG1609	N/A	N/A	DNA-binding transcriptional regulator, LacI/PurR family	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0193997	Yes	25,600	45	72	1
UHGV-0124263	No	22,579	46	64	1
UHGV-0322631	No	22,158	46	63	1