vOTU vOTU-023060

vOTU: vOTU-023060

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-023060
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00163 → vSUBFAM-02063 → vGENUS-11032 → vOTU-023060
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae
Host range breadth	Family
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1249558
Biosample ID	N/A
Genome length (bp)	31,191 bps
CheckV completeness	58.94% (Medium-quality)
CDS count	41
CDS density	95.82%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae	Total connections	21	Host agreement	90.48
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → UBA737 → UBA737 sp900549055	Total connections	20	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 58.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1249558_1	phrog_36	66.9	3.6e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1249558_1	UniRef90_UPI00189CA0E1	132.0	1.99e-37	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-1249558_1	1235835.C814_01174	123.0	1.43e-34	N/A	N/A
structural_annotation	UHGV-1249558_1	PF04545	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1249558_4	PF09871,COG4014	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1249558_8	PF09947	N/A	N/A	N/A	N/A
PHROG	UHGV-1249558_10	phrog_3136	127.5	4.8e-38	N/A	unknown function
UniRef90	UHGV-1249558_10	UniRef90_UPI001C26B029	115.0	2.05e-28	ASCH domain-containing protein	N/A
COG	UHGV-1249558_10	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1249558_10	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1249558_11	phrog_22543	44.2	0.0000000000034	N/A	unknown function
PHROG	UHGV-1249558_12	phrog_13321	60.9	1.3e-18	N/A	unknown function
UniRef90	UHGV-1249558_12	UniRef90_UPI00030D2C45	329.0	0	radical SAM protein	N/A
eggNOG-mapper	UHGV-1249558_12	1007096.BAGW01000031_gene122	329.0	0	PFAM Radical SAM	N/A
Pfam	UHGV-1249558_12	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
COG	UHGV-1249558_12	COG1533	N/A	N/A	DNA repair photolyase	N/A
structural_annotation	UHGV-1249558_12	PF20903,MF_00917,NF033668,COG4422	N/A	N/A	N/A	N/A
PHROG	UHGV-1249558_16	phrog_8841	441.2	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1249558_16	UniRef90_A0A3E2X397	455.0	0	N/A	N/A
eggNOG-mapper	UHGV-1249558_16	1298920.KI911353_gene4866	430.0	0	N/A	N/A
Pfam	UHGV-1249558_16	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1249558_16	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1249558_16	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1249558_16	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-1249558_17	K02316	81.7	1.1e-23	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1249558_17	phrog_11992	100.5	2.1e-29	N/A	unknown function
UniRef90	UHGV-1249558_17	UniRef90_A0A1H9YJB0	100.0	8.21e-24	CHC2 zinc finger	N/A
eggNOG-mapper	UHGV-1249558_17	411460.RUMTOR_02069	89.4	3.14e-20	CHC2 zinc finger	N/A
PADLOC	UHGV-1249558_17	drt-UG29	67.3	1.6e-19	DRT	DRT
Pfam	UHGV-1249558_17	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1249558_17	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1249558_17	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-1249558_18	phrog_3490	92.4	2.3e-27	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1249558_18	UniRef90_A0A3D4T734	194.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1249558_18	861454.HMPREF9099_00350	86.3	9.01e-19	ERCC4 domain	N/A
structural_annotation	UHGV-1249558_18	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-1249558_19	K03111	137.6	1.3e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1249558_19	phrog_44	138.2	4.90006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1249558_19	UniRef90_A0A3D4T9F8	265.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1249558_19	1507.HMPREF0262_03706	149.0	2.94273e-44	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1249558_19	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1249558_19	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1249558_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1249558_19	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1249558_19	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1249558_21	phrog_3657	341.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1249558_21	1089546.AQUI01000002_gene127	209.0	0	N/A	N/A
structural_annotation	UHGV-1249558_22	PF19157	N/A	N/A	N/A	N/A
KOfam	UHGV-1249558_23	K10906	99.9	6.4e-37	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-1249558_23	phrog_412	254.0	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1249558_23	UniRef90_A0A3D4T735	442.0	0	N/A	N/A
eggNOG-mapper	UHGV-1249558_23	1454004.AW11_02382	169.0	0	N/A	N/A
Pfam	UHGV-1249558_23	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1249558_23	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1249558_23	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1249558_26	phrog_424	83.4	1.9e-24	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1249558_26	693746.OBV_43240	561.0	0	N/A	N/A
COG	UHGV-1249558_26	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1249558_26	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1249558_27	K00558	208.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1249558_27	phrog_116	264.9	0	DNA methyltransferase	other
UniRef90	UHGV-1249558_27	UniRef90_A0A0U1L2E6	581.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1249558_27	1123288.SOV_2c03860	581.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1249558_27	MTase_II_00164	86.2	4.5e-30	Type II methyltransferase	RM
Pfam	UHGV-1249558_27	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1249558_27	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1249558_27	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
COG	UHGV-1249558_29	COG4961	N/A	N/A	Flp pilus assembly protein TadG, includes N-terminal TadE domain	N/A
PHROG	UHGV-1249558_30	phrog_3	51.1	0.000000000000057	transcriptional repressor	transcription regulation
UniRef90	UHGV-1249558_30	UniRef90_G9XCI3	71.2	0.0000000000000059	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1249558_30	796940.HMPREF9628_01560	71.2	9.9e-16	N/A	N/A
Pfam	UHGV-1249558_30	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-1249558_30	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1249558_31	K01356	116.8	3.1e-34	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1249558_31	phrog_4	124.1	1.3e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-1249558_31	UniRef90_R6MAH2	276.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-1249558_31	883109.HMPREF0380_00272	123.0	4.04e-32	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1249558_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1249558_31	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1249558_31	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1249558_31	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-1249558_32	K06400	300.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1249558_32	phrog_95	298.3	0	integrase	integration and excision
UniRef90	UHGV-1249558_32	UniRef90_R6DN79	440.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1249558_32	537013.CLOSTMETH_01697	424.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1249558_32	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1249558_32	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1249558_32	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1249558_32	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1249558_32	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1249558_33	phrog_443	59.6	8.7e-17	holin	lysis
UniRef90	UHGV-1249558_33	UniRef90_A0A1M6RHE6	92.4	2.36e-23	Holin, r1t family	N/A
eggNOG-mapper	UHGV-1249558_33	411490.ANACAC_00704	82.8	2.78e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1249558_33	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1249558_33	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1249558_34	K07273	162.6	0	acm; lysozyme	N/A
PHROG	UHGV-1249558_34	phrog_291	134.5	9.39999e-40	endolysin	lysis
UniRef90	UHGV-1249558_34	UniRef90_A0A354MB03	355.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1249558_34	398512.JQKC01000068_gene4270	263.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1249558_34	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1249558_34	COG0810	N/A	N/A	Periplasmic protein TonB, links inner and outer membranes	N/A
structural_annotation	UHGV-1249558_34	PF01183,PF01476,TIGR02899,NF007360,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-1249558_35	phrog_1863	61.1	9.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-1249558_35	665956.HMPREF1032_02709	98.6	6.17e-26	N/A	N/A
KOfam	UHGV-1249558_37	K24214	75.6	3.9e-22	OTOL1; otolin-1	N/A
PHROG	UHGV-1249558_37	phrog_5073	66.8	1.2e-19	tail fiber protein	tail
eggNOG-mapper	UHGV-1249558_37	1415147.V5Q7W6_9CAUD	60.5	0.000000247	N/A	N/A
Pfam	UHGV-1249558_37	PF18454	N/A	N/A	Major tropism determinant N-terminal domain	Mtd_N
Pfam	UHGV-1249558_37	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1249558_38	phrog_24267	81.1	8.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-1249558_38	742742.HMPREF9452_00376	105.0	4.82e-25	tail collar domain protein	N/A
COG	UHGV-1249558_38	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1249558_38	PF10651	N/A	N/A	N/A	N/A
UniRef90	UHGV-1249558_39	UniRef90_A0A316M336	566.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1249558_39	1408437.JNJN01000060_gene452	459.0	0	heme binding	N/A
Pfam	UHGV-1249558_39	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
COG	UHGV-1249558_39	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-1249558_40	PF08703,NF038305	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1249558	Yes	31,191	45	59	1
UHGV-0194622	No	15,783	46	40	1
UHGV-1206648	No	17,731	45	39	1