vOTU vOTU-023167

vOTU: vOTU-023167

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-023167
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00118 → vOTU-023167
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella sp003436425
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1480454
Biosample ID	N/A
Genome length (bp)	63,947 bps
CheckV completeness	67.58% (Medium-quality)
CDS count	98
CDS density	91.13%
tRNA count	9
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella sp003436425	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 67.58)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1480454_1	K03111	140.7	1.40004e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1480454_1	phrog_44	126.4	2.3e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1480454_1	UniRef90_A0A356F1Z1	138.0	7.29999e-40	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1480454_1	748449.Halha_2608	121.0	5.75e-34	TIGRFAM single stranded DNA-binding protein (ssb)	N/A
Pfam	UHGV-1480454_1	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1480454_1	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1480454_1	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1480454_1	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1480454_2	83344.XP_007929821.1	76.3	0.0000000000000247	N/A	N/A
UniRef90	UHGV-1480454_4	UniRef90_A0A843GT70	51.6	0.00000169	N/A	N/A
Pfam	UHGV-1480454_4	PF20037	N/A	N/A	N/A	DUF6440
structural_annotation	UHGV-1480454_4	PF20037	N/A	N/A	N/A	N/A
PHROG	UHGV-1480454_5	phrog_392	119.0	7.8e-36	metal-dependent hydrolase	other
UniRef90	UHGV-1480454_5	UniRef90_UPI0011219760	97.8	2.65e-21	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1480454_5	926561.KB900622_gene661	84.3	6.03e-17	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1480454_5	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1480454_5	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1480454_5	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-1480454_7	K07455	120.1	3.1e-35	recT; recombination protein RecT	N/A
PHROG	UHGV-1480454_7	phrog_148	144.9	4.80645e-43	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1480454_7	UniRef90_UPI00048214BD	153.0	7.86002e-41	recombinase RecT	N/A
eggNOG-mapper	UHGV-1480454_7	926692.AZYG01000059_gene80	153.0	1.32002e-41	RecT family	N/A
Pfam	UHGV-1480454_7	PF03837	N/A	N/A	RecT family	RecT
COG	UHGV-1480454_7	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
KOfam	UHGV-1480454_10	K19171	80.3	2.1e-23	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1480454_10	phrog_77	140.3	1.29998e-41	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1480454_10	UniRef90_W6NHD8	126.0	6.79e-27	ATPase involved in DNA repair, phage associated	N/A
eggNOG-mapper	UHGV-1480454_10	1121342.AUCO01000012_gene1723	126.0	1.14e-27	nuclear chromosome segregation	N/A
COG	UHGV-1480454_10	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1480454_10	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1480454_11	phrog_478	76.7	2.2e-22	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1480454_11	UniRef90_A0A376GT60	83.2	8.22e-18	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-1480454_11	1123263.AUKY01000096_gene1821	55.1	0.000000105	N/A	N/A
KOfam	UHGV-1480454_14	K03466	211.0	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-1480454_14	phrog_1358	193.3	0	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1480454_14	UniRef90_UPI00069A2801	152.0	1.46e-38	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1480454_14	35841.BT1A1_2565	156.0	2.56e-39	Belongs to the FtsK SpoIIIE SftA family	N/A
PADLOC	UHGV-1480454_14	SspH_00004	93.5	1.8e-27	SspH	SSP
Pfam	UHGV-1480454_14	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-1480454_14	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
structural_annotation	UHGV-1480454_14	PF01580,PF17854,MF_01076,NF041214,COG0433	N/A	N/A	N/A	N/A
KOfam	UHGV-1480454_23	K07171	74.6	2.2e-21	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-1480454_23	phrog_1936	100.3	2e-29	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1480454_23	UniRef90_R5L321	78.2	2.7e-16	mRNA interferase	N/A
eggNOG-mapper	UHGV-1480454_23	518637.EUBIFOR_00886	71.2	0.000000000000021	Toxic component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-1480454_23	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-1480454_23	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-1480454_23	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
UniRef90	UHGV-1480454_30	UniRef90_A0A7X1GHT0	73.6	0.00000000000138	Cysteine protease	N/A
eggNOG-mapper	UHGV-1480454_30	69328.PVLB_27422	66.2	0.000000000114	N/A	N/A
PHROG	UHGV-1480454_31	phrog_33696	57.8	2e-16	N/A	unknown function
PHROG	UHGV-1480454_41	phrog_38	115.0	5.9e-34	terminase large subunit	head and packaging
eggNOG-mapper	UHGV-1480454_41	428127.EUBDOL_01551	111.0	6.25e-24	chromosome segregation	N/A
COG	UHGV-1480454_41	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1480454_41	PF17289,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-1480454_42	phrog_64	170.4	0	portal protein	head and packaging
UniRef90	UHGV-1480454_42	UniRef90_A0A3E3AE79	152.0	5e-37	Phage portal protein	N/A
eggNOG-mapper	UHGV-1480454_42	1140002.I570_01445	84.3	0.000000000000018	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1480454_42	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1480454_42	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1480454_44	phrog_909	48.3	0.00000000000014	major head protein	head and packaging
UniRef90	UHGV-1480454_44	UniRef90_A0A512PLH0	55.5	0.00000037	Putative structural protein-phage associated	N/A
eggNOG-mapper	UHGV-1480454_44	1158612.I580_01911	60.5	0.000000000749	N/A	N/A
structural_annotation	UHGV-1480454_44	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-1480454_45	phrog_29	228.3	0	major head protein	head and packaging
UniRef90	UHGV-1480454_45	UniRef90_UPI00082C04A5	269.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1480454_45	1158612.I580_01912	241.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1480454_45	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1480454_45	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1480454_54	1121296.JONJ01000011_gene85	62.8	0.0000000165	protein involved in cytokinesis, contains TGc (transglutaminase protease-like) domain	N/A
Pfam	UHGV-1480454_54	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
COG	UHGV-1480454_54	COG2273	N/A	N/A	Beta-glucanase, GH16 family	N/A
structural_annotation	UHGV-1480454_54	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1480454_56	670487.Ocepr_1973	59.3	0.0000066	cellulose binding	N/A
COG	UHGV-1480454_56	COG4447	N/A	N/A	N/A	N/A
PHROG	UHGV-1480454_59	phrog_35892	40.8	0.0000000000097	N/A	unknown function
Pfam	UHGV-1480454_59	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
COG	UHGV-1480454_59	COG4886	N/A	N/A	Leucine-rich repeat (LRR) protein	N/A
structural_annotation	UHGV-1480454_59	PF13306,NF041351	N/A	N/A	N/A	N/A
COG	UHGV-1480454_61	COG5295	N/A	N/A	Autotransporter adhesin	N/A
PHROG	UHGV-1480454_68	phrog_314	57.1	2.4e-16	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1480454_68	UniRef90_A0A1G5EWF7	113.0	4.06e-27	Group I intron endonuclease	N/A
eggNOG-mapper	UHGV-1480454_68	1399942.U3PCR9_9CAUD	71.6	0.00000000000121	NUMOD3 motif (2 copies)	N/A
Pfam	UHGV-1480454_68	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
structural_annotation	UHGV-1480454_68	PF19835,PF07460,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-1480454_69	phrog_21718	44.7	0.0000000000018	N/A	unknown function
PHROG	UHGV-1480454_71	phrog_16490	98.8	5.8e-30	N/A	unknown function
eggNOG-mapper	UHGV-1480454_71	476272.RUMHYD_01770	121.0	4.23e-31	N/A	N/A
eggNOG-mapper	UHGV-1480454_73	1408437.JNJN01000043_gene802	159.0	0	N/A	N/A
eggNOG-mapper	UHGV-1480454_74	445972.ANACOL_01884	52.4	0.0000017	N/A	N/A
PHROG	UHGV-1480454_75	phrog_3754	52.3	0.0000000000000015	N/A	unknown function
KOfam	UHGV-1480454_78	K02316	45.4	0.00000000000098	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1480454_78	phrog_11992	60.7	9.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-1480454_78	657322.FPR_13090	62.4	0.00000000532	CHC2 zinc finger	N/A
PADLOC	UHGV-1480454_78	drt-cluster192	54.5	0.0000000000000023	DRT	DRT
Pfam	UHGV-1480454_78	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1480454_78	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
KOfam	UHGV-1480454_79	K00390	47.3	0.000000000000037	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1480454_79	phrog_424	82.3	2.6e-24	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1480454_79	UniRef90_A0A846KFZ5	355.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-1480454_79	397291.C804_00950	350.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1480454_79	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1480454_79	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1480454_79	PF01507,MF_00063,TIGR02055,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1480454_80	K17680	147.4	8.26766e-44	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-1480454_80	phrog_19	143.5	1.49939e-42	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1480454_80	UniRef90_A0A1I5IYN3	273.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1480454_80	1232453.BAIF02000057_gene1145	239.0	0	DNA replication initiation	N/A
Pfam	UHGV-1480454_80	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1480454_80	COG1241	N/A	N/A	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	N/A
structural_annotation	UHGV-1480454_80	PF03796,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
UniRef90	UHGV-1480454_83	UniRef90_A0A843FSU3	166.0	0	Nucleotidyltransferase domain-containing protein	N/A
eggNOG-mapper	UHGV-1480454_83	1236973.JCM9157_1946	67.8	0.00000000018	Predicted nucleotidyltransferase	N/A
structural_annotation	UHGV-1480454_83	PF10127,NF000079,COG3541	N/A	N/A	N/A	N/A
KOfam	UHGV-1480454_84	K07028	75.0	9.8e-22	N/A	N/A
PHROG	UHGV-1480454_84	phrog_6931	95.7	3.4e-35	N/A	unknown function
UniRef90	UHGV-1480454_84	UniRef90_A0A1C6AGJ4	220.0	0	Predicted kinase	N/A
eggNOG-mapper	UHGV-1480454_84	509191.AEDB02000022_gene3056	147.0	1.49e-39	Chromatin associated protein KTI12	N/A
Pfam	UHGV-1480454_84	PF13671	N/A	N/A	AAA domain	AAA_33
COG	UHGV-1480454_84	COG2844	N/A	N/A	UTP:GlnB (protein PII) uridylyltransferase	N/A
structural_annotation	UHGV-1480454_84	PF13671,PF01966,MF_00065,MF_01427,TIGR03574,COG4639,COG3481	N/A	N/A	N/A	N/A
KOfam	UHGV-1480454_85	K14680	133.0	1.9e-39	E6.5.1.3; RNA ligase [EC:6.5.1.3]	N/A
PHROG	UHGV-1480454_85	phrog_562	181.4	0	RNA ligase and tail fiber protein attachment catalyst	tail
UniRef90	UHGV-1480454_85	UniRef90_A0A345BPZ3	215.0	0	Putative RNA ligase A	N/A
eggNOG-mapper	UHGV-1480454_85	179408.Osc7112_2735	206.0	0	RNA ligase	N/A
structural_annotation	UHGV-1480454_85	PF09511,MF_04149,TIGR02308,COG5324	N/A	N/A	N/A	N/A
PHROG	UHGV-1480454_88	phrog_3136	122.0	2.5e-36	N/A	unknown function
UniRef90	UHGV-1480454_88	UniRef90_A0A3D0HBD2	102.0	2.63e-24	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1480454_88	502025.Hoch_0947	52.8	0.0000017	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-1480454_88	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1480454_88	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1480454_88	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-1480454_92	K00571	116.6	2.7e-34	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1480454_92	phrog_67	107.0	5.1e-33	DNA methyltransferase	other
UniRef90	UHGV-1480454_92	UniRef90_A0A3E3E030	286.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1480454_92	469596.HMPREF9488_00879	197.0	0	DNA methylase	N/A
PADLOC	UHGV-1480454_92	MTase_II_00157	117.7	3.8e-35	Type II methyltransferase	RM
Pfam	UHGV-1480454_92	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1480454_92	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-1480454_92	PF01555,MF_01057,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1480454_94	phrog_1163	197.5	0	N/A	unknown function
UniRef90	UHGV-1480454_94	UniRef90_UPI001C214AFE	218.0	0	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1480454_94	558169.AGAV01000001_gene3326	215.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-1480454_94	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
Pfam	UHGV-1480454_94	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1480454_94	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-1480454_94	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
UniRef90	UHGV-1480454_95	UniRef90_A0A3G2R5U5	85.1	1.2e-17	N/A	N/A
eggNOG-mapper	UHGV-1480454_95	632292.Calhy_0750	84.3	5.75e-18	Protein conserved in bacteria	N/A
Pfam	UHGV-1480454_95	PF18741	N/A	N/A	REase_MTES_1575	MTES_1575
COG	UHGV-1480454_95	COG2852	N/A	N/A	Very-short-patch-repair endonuclease	N/A
PHROG	UHGV-1480454_96	phrog_850	145.0	6.44597e-44	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1480454_96	UniRef90_UPI0014701DDE	114.0	4.79e-24	N/A	N/A
eggNOG-mapper	UHGV-1480454_96	1357423.S5MD58_9CAUD	138.0	4.47e-33	N/A	N/A
Pfam	UHGV-1480454_96	PF11443	N/A	N/A	N/A	DUF2828
structural_annotation	UHGV-1480454_96	PF11443,MF_01340,NF041674,COG1240	N/A	N/A	N/A	N/A
KOfam	UHGV-1480454_97	K18962	57.4	1.4e-16	rnlB; T4 RNA ligase 2 [EC:6.5.1.3]	N/A
PHROG	UHGV-1480454_97	phrog_548	69.6	3.3e-20	RNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1480454_97	UniRef90_A0A415ZLT1	279.0	0	RNA_ligase domain-containing protein	N/A
eggNOG-mapper	UHGV-1480454_97	1499967.BAYZ01000036_gene2416	154.0	1.54143e-44	RNA ligase	N/A
Pfam	UHGV-1480454_97	PF09414	N/A	N/A	RNA ligase	RNA_ligase
structural_annotation	UHGV-1480454_97	PF09414,MF_04150,TIGR01209,COG1423	N/A	N/A	N/A	N/A
PHROG	UHGV-1480454_98	phrog_19106	181.0	0	N/A	unknown function
UniRef90	UHGV-1480454_98	UniRef90_A0A412EKN4	157.0	7.00649e-45	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-1480454_98	658655.HMPREF0988_00875	139.0	1.52e-38	N/A	N/A
Pfam	UHGV-1480454_98	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1480454	Yes	63,947	32	68	1
UHGV-1340463	No	63,947	32	68	1
UHGV-0134542	No	38,393	32	67	1
UHGV-0197687	No	33,822	32	37	1