vOTU vOTU-023335

vOTU: vOTU-023335

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-023335
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00099 → vGENUS-00355 → vOTU-023335
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0355580
Biosample ID	SAMN05826743
Genome length (bp)	33,252 bps
CheckV completeness	89.55% (Medium-quality)
CDS count	48
CDS density	89.65%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus	Total connections	137	Host agreement	83.94
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus	Total connections	13	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 89.55)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0355580_1	411470.RUMGNA_02203	147.0	5.14277e-43	N/A	N/A
PHROG	UHGV-0355580_3	phrog_36	62.3	9.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0355580_3	UniRef90_A0A1C5X3K2	257.0	0	RNA polymerase sigma factor, sigma-70 family	N/A
eggNOG-mapper	UHGV-0355580_3	411470.RUMGNA_02205	209.0	0	Sigma-70, region 4	N/A
structural_annotation	UHGV-0355580_3	PF04545,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_4	phrog_309	170.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-0355580_4	UniRef90_A0A2N5PKF8	206.0	0	Transposase	N/A
eggNOG-mapper	UHGV-0355580_4	411470.RUMGNA_02210	333.0	0	transposase activity	N/A
Pfam	UHGV-0355580_4	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0355580_4	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0355580_4	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0355580_5	K06909	79.5	5.2e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0355580_5	phrog_2	87.5	2.6e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0355580_5	UniRef90_A7B3T0	861.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0355580_5	411470.RUMGNA_02211	861.0	0	N/A	N/A
Pfam	UHGV-0355580_5	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0355580_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0355580_5	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_6	phrog_533	339.4	0	portal protein	head and packaging
UniRef90	UHGV-0355580_6	UniRef90_A7B3T1	874.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0355580_6	411470.RUMGNA_02212	874.0	0	N/A	N/A
structural_annotation	UHGV-0355580_6	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_7	phrog_581	226.9	0	minor head protein	head and packaging
UniRef90	UHGV-0355580_7	UniRef90_A0A1C5UIX2	360.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0355580_7	411470.RUMGNA_02213	453.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0355580_7	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0355580_7	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0355580_7	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_8	phrog_374	255.1	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0355580_8	UniRef90_A6BES1	288.0	0	AP2 domain protein	N/A
eggNOG-mapper	UHGV-0355580_8	411462.DORLON_00791	288.0	0	N/A	N/A
structural_annotation	UHGV-0355580_8	PF10729,MF_01580,NF007510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0355580_9	411470.RUMGNA_02213	143.0	1.60999e-40	Phage minor capsid protein 2	N/A
COG	UHGV-0355580_9	COG2369	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0355580_10	411470.RUMGNA_02214	177.0	0	N/A	N/A
structural_annotation	UHGV-0355580_10	PF08948,MF_01537,NF007541,COG3123	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0355580_11	411470.RUMGNA_02215	239.0	0	N/A	N/A
NCBIFam	UHGV-0355580_13	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0355580_13	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_14	phrog_194	106.9	2.4e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-0355580_14	UniRef90_A5KPA4	303.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0355580_14	411470.RUMGNA_02218	322.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0355580_14	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0355580_14	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_15	phrog_422	209.1	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0355580_15	411470.RUMGNA_02219	539.0	0	N/A	N/A
structural_annotation	UHGV-0355580_15	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_16	phrog_541	93.3	2.2e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0355580_16	411470.RUMGNA_02220	198.0	0	N/A	N/A
PHROG	UHGV-0355580_17	phrog_3366	92.8	1.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0355580_17	411470.RUMGNA_02221	225.0	0	N/A	N/A
Pfam	UHGV-0355580_17	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0355580_17	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_18	phrog_556	139.5	8.00001e-42	minor head protein	head and packaging
UniRef90	UHGV-0355580_18	UniRef90_UPI001C8E2A32	212.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0355580_18	411470.RUMGNA_02222	217.0	0	N/A	N/A
structural_annotation	UHGV-0355580_18	PF11114	N/A	N/A	N/A	N/A
KOfam	UHGV-0355580_19	K02450	196.0	0	gspA; general secretion pathway protein A	N/A
PHROG	UHGV-0355580_19	phrog_296	80.8	2.2e-23	DNA transposition protein	integration and excision
UniRef90	UHGV-0355580_19	UniRef90_A0A396FJU3	442.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0355580_19	500632.CLONEX_01334	512.0	0	AAA domain	N/A
Pfam	UHGV-0355580_19	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0355580_19	COG3267	N/A	N/A	Type II secretory pathway ATPase component GspA/ExeA/MshM	N/A
structural_annotation	UHGV-0355580_19	PF05621,PF20436,MF_01407,TIGR03015,COG3267	N/A	N/A	N/A	N/A
KOfam	UHGV-0355580_20	K07497	98.6	1e-28	K07497; putative transposase	N/A
PHROG	UHGV-0355580_20	phrog_310	172.4	0	transposase	integration and excision
UniRef90	UHGV-0355580_20	UniRef90_A0A829NIA8	792.0	0	Integrase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-0355580_20	411470.RUMGNA_03704	791.0	0	Transposase and inactivated derivatives	N/A
Pfam	UHGV-0355580_20	PF13565	N/A	N/A	Homeodomain-like domain	HTH_32
Pfam	UHGV-0355580_20	PF00665	N/A	N/A	Integrase core domain	rve
Pfam	UHGV-0355580_20	PF13683	N/A	N/A	Integrase core domain	rve_3
COG	UHGV-0355580_20	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0355580_20	PF00665,PF13565,NF033594,COG4584	N/A	N/A	N/A	N/A
UniRef90	UHGV-0355580_21	UniRef90_UPI001F261C3B	250.0	0	N/A	N/A
eggNOG-mapper	UHGV-0355580_21	1280671.AUJH01000016_gene916	152.0	2.24208e-44	N/A	N/A
PHROG	UHGV-0355580_22	phrog_3266	128.4	3.2e-38	tail completion	connector
eggNOG-mapper	UHGV-0355580_22	411470.RUMGNA_02223	222.0	0	N/A	N/A
PHROG	UHGV-0355580_23	phrog_3099	156.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0355580_23	411470.RUMGNA_02224	328.0	0	N/A	N/A
structural_annotation	UHGV-0355580_23	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_24	phrog_4450	123.8	8.9e-37	N/A	unknown function
UniRef90	UHGV-0355580_24	UniRef90_UPI001C0AC01D	79.7	6.85e-17	AP endonuclease	N/A
eggNOG-mapper	UHGV-0355580_24	1235792.C808_05374	140.0	1.87003e-41	N/A	N/A
Pfam	UHGV-0355580_24	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0355580_24	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_25	phrog_706	160.9	0	N/A	unknown function
UniRef90	UHGV-0355580_25	UniRef90_UPI00195660EF	254.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0355580_25	658655.HMPREF0988_02553	236.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0355580_25	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0355580_25	PF06854	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0355580_26	1235792.C808_05376	68.2	0.00000000000000571	N/A	N/A
structural_annotation	UHGV-0355580_26	PF10122,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_27	phrog_6900	254.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0355580_27	UniRef90_UPI001C8EB1BF	118.0	1.1e-23	tape measure protein	N/A
eggNOG-mapper	UHGV-0355580_27	742765.HMPREF9457_02136	345.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0355580_27	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0355580_27	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_28	phrog_202	321.2	0	distal tail protein Dit	tail
UniRef90	UHGV-0355580_28	UniRef90_A7B3U8	920.0	0	Putative phage tail component domain protein	N/A
eggNOG-mapper	UHGV-0355580_28	411470.RUMGNA_02229	920.0	0	N/A	N/A
Pfam	UHGV-0355580_28	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0355580_28	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0355580_28	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0355580_28	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_29	phrog_588	478.8	0	tail fiber protein and host specificity	tail
UniRef90	UHGV-0355580_29	UniRef90_UPI0006C2B16B	1149.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0355580_29	411470.RUMGNA_02230	788.0	0	N/A	N/A
structural_annotation	UHGV-0355580_29	PF14594,PF16820,TIGR01665,NF041894,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0355580_30	UniRef90_UPI0018A0938C	899.0	0	InlB B-repeat-containing protein	N/A
eggNOG-mapper	UHGV-0355580_30	1688.BCUN_1858	162.0	2.7003e-42	Listeria-Bacteroides repeat domain (List_Bact_rpt)	N/A
Pfam	UHGV-0355580_30	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
NCBIFam	UHGV-0355580_30	TIGR02543.1	N/A	N/A	TIGR02543 family repeat protein	N/A
structural_annotation	UHGV-0355580_30	PF05895	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_31	phrog_199	75.7	3.8e-22	holin	lysis
UniRef90	UHGV-0355580_31	UniRef90_A0A2N5P5I5	280.0	0	Holin	N/A
eggNOG-mapper	UHGV-0355580_31	1469948.JPNB01000001_gene536	194.0	0	TIGRFAM toxin secretion phage lysis holin	N/A
Pfam	UHGV-0355580_31	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0355580_31	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0355580_31	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
PHROG	UHGV-0355580_32	phrog_9243	94.5	1.1e-27	N/A	unknown function
UniRef90	UHGV-0355580_32	UniRef90_UPI00156F94F8	447.0	0	N/A	N/A
eggNOG-mapper	UHGV-0355580_32	1235790.C805_02311	164.0	0	N/A	N/A
Pfam	UHGV-0355580_32	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-0355580_32	MF_00052_A,NF011119	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_33	phrog_918	121.7	2.1e-36	N/A	unknown function
UniRef90	UHGV-0355580_33	UniRef90_UPI001CF89D06	144.0	2.07392e-43	N/A	N/A
eggNOG-mapper	UHGV-0355580_33	1140001.I571_01827	122.0	3.06e-35	N/A	N/A
Pfam	UHGV-0355580_33	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0355580_33	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-0355580_35	K01448	100.5	2.1e-29	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0355580_35	phrog_435	162.6	0	endolysin	lysis
UniRef90	UHGV-0355580_35	UniRef90_A0A2N5NRG3	524.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0355580_35	411470.RUMGNA_02814	515.0	0	Ami_3	N/A
Pfam	UHGV-0355580_35	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0355580_35	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0355580_35	PF01520,MF_00417,TIGR02883,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-0355580_36	K06400	379.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0355580_36	phrog_95	391.7	0	integrase	integration and excision
UniRef90	UHGV-0355580_36	UniRef90_UPI0011853F05	944.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0355580_36	411460.RUMTOR_02053	716.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0355580_36	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0355580_36	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0355580_36	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0355580_36	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0355580_36	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_37	phrog_7115	151.5	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0355580_37	UniRef90_UPI001CD3F351	236.0	0	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-0355580_37	471855.Shel_11460	147.0	5.04467e-44	Bacterial PH domain	N/A
Pfam	UHGV-0355580_37	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
structural_annotation	UHGV-0355580_37	PF08000,MF_00437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0355580_38	411461.DORFOR_00034	152.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0355580_38	PF11631,TIGR03066	N/A	N/A	N/A	N/A
KOfam	UHGV-0355580_40	K18830	44.3	0.00000000000042	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-0355580_40	UniRef90_A0A2N5NVN2	238.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0355580_40	1235790.C805_00012	126.0	5.56e-36	Helix-turn-helix domain	N/A
Pfam	UHGV-0355580_40	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0355580_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0355580_40	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0355580_42	phrog_28292	103.5	1e-30	N/A	unknown function
UniRef90	UHGV-0355580_42	UniRef90_A0A8B3BZ84	127.0	5.56e-37	3-hydroxyacyl-CoA dehydrogenase	N/A
eggNOG-mapper	UHGV-0355580_42	500632.CLONEX_01438	108.0	2.79e-30	N/A	N/A
KOfam	UHGV-0355580_43	K07741	111.0	2.6e-32	antB; anti-repressor protein	N/A
PHROG	UHGV-0355580_43	phrog_63	218.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0355580_43	UniRef90_UPI0015706F54	464.0	0	phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-0355580_43	1582156.A0A0A8WJ71_9CAUD	236.0	0	DNA binding	N/A
Pfam	UHGV-0355580_43	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0355580_43	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0355580_43	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
structural_annotation	UHGV-0355580_43	PF03374,PF09669,TIGR02681,COG3645,COG3646	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0355580_44	1235790.C805_00014	50.4	0.0000000694	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0355580	Yes	33,252	42	90	1
UHGV-1541092	No	24,262	42	65	1
UHGV-0202719	No	18,738	43	50	1