vOTU vOTU-023396

vOTU: vOTU-023396

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-023396
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-01155 → vOTU-023396
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1248736
Biosample ID	SAMN07646552
Genome length (bp)	26,257 bps
CheckV completeness	65.03% (Medium-quality)
CDS count	34
CDS density	94.57%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	397	Host agreement	99.5
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 65.03)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1248736_1	K02342	78.9	6e-23	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-1248736_1	phrog_192	101.5	7.3e-30	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1248736_1	UniRef90_UPI00145757BC	74.7	0.0000000000241	DNA polymerase III subunit epsilon	N/A
eggNOG-mapper	UHGV-1248736_1	1121333.JMLH01000063_gene1384	112.0	6.65e-26	SWIM zinc finger	N/A
PADLOC	UHGV-1248736_1	cd06127	72.7	1.1e-20	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-1248736_1	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-1248736_1	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-1248736_1	COG0847	N/A	N/A	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	N/A
structural_annotation	UHGV-1248736_1	PF13361,PF00533,MF_00157,NF008746,COG2925	N/A	N/A	N/A	N/A
KOfam	UHGV-1248736_4	K07729	45.2	0.0000000000016	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1248736_4	phrog_1373	46.6	0.00000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-1248736_4	UniRef90_A0A2A7B6N3	219.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1248736_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1248736_4	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-1248736_4	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1248736_5	K14059	197.3	0	int; integrase	N/A
PHROG	UHGV-1248736_5	phrog_1	193.0	0	integrase	integration and excision
UniRef90	UHGV-1248736_5	UniRef90_A0A367GI93	265.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1248736_5	1507.HMPREF0262_00307	186.0	0	Phage integrase family	N/A
Pfam	UHGV-1248736_5	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1248736_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1248736_5	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1248736_5	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1248736_6	1408437.JNJN01000043_gene801	96.7	4.61e-22	N/A	N/A
eggNOG-mapper	UHGV-1248736_7	1408437.JNJN01000043_gene802	122.0	3.18e-34	N/A	N/A
PHROG	UHGV-1248736_8	phrog_16490	104.5	8.6e-38	N/A	unknown function
eggNOG-mapper	UHGV-1248736_8	1408437.JNJN01000043_gene803	164.0	0	N/A	N/A
UniRef90	UHGV-1248736_11	UniRef90_A0A1Y3R5J8	50.1	0.000000922	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1248736_11	1160721.RBI_I00206	58.9	0.000000000051	N/A	N/A
Pfam	UHGV-1248736_11	PF09274	N/A	N/A	ParG	ParG
structural_annotation	UHGV-1248736_11	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-1248736_14	phrog_15303	70.4	2.3e-20	N/A	unknown function
KOfam	UHGV-1248736_16	K07273	152.6	2.8026e-45	acm; lysozyme	N/A
PHROG	UHGV-1248736_16	phrog_291	109.2	3.8e-32	endolysin	lysis
UniRef90	UHGV-1248736_16	UniRef90_A0A564U0D3	389.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1248736_16	718252.FP2_04890	229.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1248736_16	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1248736_16	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1248736_16	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
Pfam	UHGV-1248736_17	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
COG	UHGV-1248736_17	COG5434	N/A	N/A	Polygalacturonase	N/A
PHROG	UHGV-1248736_19	phrog_1067	198.2	0	minor head protein	head and packaging
UniRef90	UHGV-1248736_19	UniRef90_A0A2A7AM44	494.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1248736_19	1123263.AUKY01000068_gene489	217.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1248736_19	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1248736_19	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1248736_19	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1248736_19	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1248736_20	phrog_33	85.8	8.2e-25	distal tail protein Dit	tail
UniRef90	UHGV-1248736_20	UniRef90_A0A1C6H6D2	127.0	2.32e-32	Phage-related protein	N/A
eggNOG-mapper	UHGV-1248736_20	439292.Bsel_2995	107.0	1.98e-25	tail component	N/A
COG	UHGV-1248736_20	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1248736_20	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1248736_21	K10421	43.0	0.00000000000095	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-1248736_21	phrog_9959	93.3	1.5e-27	tail length tape measure protein	tail
UniRef90	UHGV-1248736_21	UniRef90_A0A2A7ALS3	829.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1248736_21	1216932.CM240_0683	150.0	2.05e-34	tape measure	N/A
Pfam	UHGV-1248736_21	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1248736_21	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1248736_21	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1248736_21	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1248736_23	1286171.EAL2_c05960	51.2	0.00000411	N/A	N/A
PHROG	UHGV-1248736_24	phrog_88	87.4	1.6e-25	major tail protein	tail
UniRef90	UHGV-1248736_24	UniRef90_A0A7U9IBX1	134.0	6.81e-36	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1248736_24	33035.JPJF01000039_gene278	81.3	2.77e-16	N/A	N/A
NCBIFam	UHGV-1248736_24	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1248736_24	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1248736_25	phrog_5	55.1	0.0000000000000012	tail completion or Neck1 protein	connector
UniRef90	UHGV-1248736_25	UniRef90_A0A1C6FG30	118.0	1.93e-30	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1248736_25	908340.HMPREF9406_2573	110.0	1.96e-28	N/A	N/A
Pfam	UHGV-1248736_25	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1248736_25	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1248736_25	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1248736_26	999413.HMPREF1094_02005	68.6	0.000000000000142	N/A	N/A
structural_annotation	UHGV-1248736_26	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1248736_27	phrog_19734	101.1	8.8e-30	N/A	unknown function
UniRef90	UHGV-1248736_27	UniRef90_A0A6I7GNS7	121.0	7.64e-33	Phage head closure protein	N/A
eggNOG-mapper	UHGV-1248736_27	349161.Dred_2602	75.9	6.48e-16	N/A	N/A
structural_annotation	UHGV-1248736_27	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1248736_28	phrog_749	54.6	0.0000000000000016	N/A	unknown function
UniRef90	UHGV-1248736_28	UniRef90_A0A7V7BBS9	67.4	0.00000000000188	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1248736_28	1235792.C808_00087	80.5	2.61e-18	N/A	N/A
PHROG	UHGV-1248736_29	phrog_10	135.4	6e-40	major head protein	head and packaging
UniRef90	UHGV-1248736_29	UniRef90_A0A2A7B712	763.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1248736_29	1235792.C808_00086	456.0	0	Phage capsid family	N/A
Pfam	UHGV-1248736_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1248736_29	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1248736_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1248736_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1248736_29	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1248736_30	K01358	89.7	4.1e-26	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1248736_30	phrog_94	140.9	1.29998e-41	head maturation protease	head and packaging
UniRef90	UHGV-1248736_30	UniRef90_A0A0H5SII2	157.0	9.66896e-44	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1248736_30	1232452.BAIB02000007_gene1626	149.0	1.13001e-41	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1248736_30	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1248736_30	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1248736_30	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1248736_31	phrog_12	63.1	3e-18	portal protein	head and packaging
UniRef90	UHGV-1248736_31	UniRef90_A0A2A7B6S8	344.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1248736_31	349161.Dred_2606	194.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1248736_31	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1248736_31	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1248736_31	PF04860,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1248736_32	phrog_12	94.1	1.1e-27	portal protein	head and packaging
UniRef90	UHGV-1248736_32	UniRef90_A0A2A7B6S8	452.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1248736_32	349161.Dred_2606	231.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1248736_32	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1248736_32	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1248736_32	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
PHROG	UHGV-1248736_33	phrog_9	236.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1248736_33	UniRef90_A0A2A7ALT4	1030.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1248736_33	610130.Closa_0741	623.0	0	Phage Terminase	N/A
Pfam	UHGV-1248736_33	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1248736_33	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1248736_33	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1248736	Yes	26,257	54	65	1
UHGV-0205672	No	13,234	53	33	1
UHGV-1958466	No	10,864	53	27	1