vOTU vOTU-023678

vOTU: vOTU-023678

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-023678
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00673 → vOTU-023678
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1441201
Biosample ID	SAMN06110115
Genome length (bp)	29,010 bps
CheckV completeness	82.45% (Medium-quality)
CDS count	43
CDS density	95.72%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	731	Host agreement	78.25
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	140	Host agreement	92.86

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 82.45)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1441201_1	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_2	phrog_1067	104.5	9.5e-31	minor head protein	head and packaging
UniRef90	UHGV-1441201_2	UniRef90_A0A1G5CPD2	160.0	6.5805e-42	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-1441201_2	1567011.A0A0A7RUI9_9VIRU	73.9	0.0000000000202	N-acetylmuramoyl-L-alanine amidase activity	N/A
NCBIFam	UHGV-1441201_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1441201_2	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_3	phrog_33	66.9	4.8e-19	distal tail protein Dit	tail
UniRef90	UHGV-1441201_3	UniRef90_UPI000BB5198E	74.7	0.00000000000195	phage tail family protein	N/A
eggNOG-mapper	UHGV-1441201_3	272623.L63101	71.2	0.0000000000076	phage tail	N/A
COG	UHGV-1441201_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1441201_3	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1441201_4	K20282	49.9	1e-16	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-1441201_4	phrog_1272	269.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1441201_4	UniRef90_A0A412ULX0	841.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1441201_4	588581.Cpap_1264	275.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1441201_4	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1441201_4	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1441201_4	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1441201_6	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_7	phrog_88	59.6	4.8e-17	major tail protein	tail
UniRef90	UHGV-1441201_7	UniRef90_A0A1G5CNS8	171.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1441201_7	411470.RUMGNA_02319	59.7	0.0000000202	COG NOG11304 non supervised orthologous group	N/A
NCBIFam	UHGV-1441201_7	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1441201_7	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-1441201_8	UniRef90_UPI000E5564A4	173.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1441201_8	1118057.CAGX01000043_gene486	66.2	0.00000000000484	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-1441201_8	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1441201_9	1123315.AUIP01000001_gene1429	54.3	0.0000000652	N/A	N/A
structural_annotation	UHGV-1441201_9	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_10	phrog_19734	65.8	5.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-1441201_10	86416.Clopa_0343	55.1	0.0000000375	N/A	N/A
structural_annotation	UHGV-1441201_10	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_11	phrog_749	51.5	0.000000000000014	N/A	unknown function
UniRef90	UHGV-1441201_11	UniRef90_A0A1G5CMX8	103.0	1.01e-26	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1441201_11	349161.Dred_2603	54.7	0.0000000255	N/A	N/A
PHROG	UHGV-1441201_12	phrog_10	113.3	2.2e-33	major head protein	head and packaging
UniRef90	UHGV-1441201_12	UniRef90_A0A412ULW9	577.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1441201_12	1211817.CCAT010000053_gene2132	327.0	0	Phage capsid family	N/A
Pfam	UHGV-1441201_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1441201_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1441201_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1441201_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1441201_13	K01358	147.8	8.82818e-44	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1441201_13	phrog_94	215.0	0	head maturation protease	head and packaging
UniRef90	UHGV-1441201_13	UniRef90_A0A412ULU1	384.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1441201_13	86416.Clopa_0340	174.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1441201_13	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1441201_13	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1441201_13	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_14	phrog_12	102.4	3.4e-30	portal protein	head and packaging
UniRef90	UHGV-1441201_14	UniRef90_A0A412ULV9	577.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1441201_14	1415774.U728_1254	269.0	0	Phage portal protein	N/A
Pfam	UHGV-1441201_14	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1441201_14	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1441201_14	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1441201_14	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_15	phrog_9	286.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1441201_15	UniRef90_A0A412UM03	981.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1441201_15	86416.Clopa_0337	621.0	0	Phage Terminase	N/A
Pfam	UHGV-1441201_15	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1441201_15	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1441201_15	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1441201_15	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_16	phrog_5110	82.8	2.9e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1441201_16	UniRef90_UPI00057D0A7C	113.0	1.2e-30	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1441201_16	86416.Clopa_0336	106.0	1.56e-28	N/A	N/A
Pfam	UHGV-1441201_16	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1441201_16	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_17	phrog_119	66.7	3.3e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1441201_17	UniRef90_A0A412ULY9	189.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1441201_17	1123315.AUIP01000014_gene1945	90.1	4.87e-22	HNH endonuclease	N/A
Pfam	UHGV-1441201_17	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1441201_17	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1441201_18	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_19	phrog_3584	137.6	8.10007e-41	replication initiation protein	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-1441201_19	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_21	phrog_824	144.0	4.1058e-43	N/A	unknown function
UniRef90	UHGV-1441201_21	UniRef90_A0A3D3D6C6	199.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1441201_21	397288.C806_00096	153.0	0	VRR_NUC	N/A
Pfam	UHGV-1441201_21	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1441201_21	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_22	phrog_24518	50.4	0.000000000000031	N/A	unknown function
eggNOG-mapper	UHGV-1441201_22	1519439.JPJG01000077_gene922	63.2	0.000000000301	N/A	N/A
PHROG	UHGV-1441201_24	phrog_25754	67.6	6.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-1441201_24	97139.C824_00736	71.6	0.00000000000001	N/A	N/A
structural_annotation	UHGV-1441201_24	PF10842,MF_00436,TIGR02383	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_26	phrog_2118	124.7	6.2e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1441201_26	UniRef90_R6QZD0	207.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1441201_26	610130.Closa_0730	156.0	0	HNH endonuclease	N/A
Pfam	UHGV-1441201_26	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1441201_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1441201_28	phrog_15609	106.0	3.4e-34	N/A	unknown function
UniRef90	UHGV-1441201_28	UniRef90_A0A373SLQ6	99.4	4.67e-20	N/A	N/A
eggNOG-mapper	UHGV-1441201_28	1514668.JOOA01000001_gene225	72.4	0.0000000000241	N/A	N/A
structural_annotation	UHGV-1441201_28	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_29	phrog_8470	201.2	0	N/A	unknown function
UniRef90	UHGV-1441201_29	UniRef90_A0A1I4ZKY0	178.0	2.94273e-44	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-1441201_29	397291.C804_06548	159.0	2.43e-38	PcfJ-like protein	N/A
Pfam	UHGV-1441201_29	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1441201_29	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_30	phrog_36399	41.5	0.000000000022	N/A	unknown function
structural_annotation	UHGV-1441201_34	COG1862	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1441201_35	PF13443,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1441201_36	UniRef90_A0A374N1V0	114.0	7.19e-32	N/A	N/A
eggNOG-mapper	UHGV-1441201_36	171693.BN988_01635	85.9	3.27e-21	N/A	N/A
Pfam	UHGV-1441201_36	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1441201_36	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1441201_36	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_37	phrog_2967	52.1	0.0000000000000062	transcriptional regulator	transcription regulation
UniRef90	UHGV-1441201_37	UniRef90_A0A374ND72	222.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1441201_37	457412.RSAG_00795	117.0	2.06e-31	sequence-specific DNA binding	N/A
COG	UHGV-1441201_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1441201_37	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_38	phrog_1914	151.0	5.60519e-45	N/A	unknown function
UniRef90	UHGV-1441201_38	UniRef90_UPI000E543E50	293.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1441201_38	1160721.RBI_I01604	168.0	0	N/A	N/A
Pfam	UHGV-1441201_38	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1441201_38	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1441201_38	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_39	phrog_1847	357.6	0	N/A	unknown function
UniRef90	UHGV-1441201_39	UniRef90_U2Q2K4	528.0	0	T5orf172 domain-containing protein	N/A
eggNOG-mapper	UHGV-1441201_39	1256908.HMPREF0373_00641	528.0	0	T5orf172	N/A
Pfam	UHGV-1441201_39	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-1441201_39	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1441201_39	PF13250,NF041454	N/A	N/A	N/A	N/A
PHROG	UHGV-1441201_40	phrog_353	79.4	2.4e-23	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1441201_40	UniRef90_A0A7X2NEB3	120.0	2.2e-34	Addiction module toxin, HicA family	N/A
eggNOG-mapper	UHGV-1441201_40	903814.ELI_3150	112.0	5.93e-32	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-1441201_40	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-1441201_40	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-1441201_40	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-1441201_41	K18843	63.1	5.6e-18	hicB; antitoxin HicB	N/A
PHROG	UHGV-1441201_41	phrog_497	69.6	5.4e-20	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1441201_41	UniRef90_A0A1E7S2B4	202.0	0	HicB-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1441201_41	903814.ELI_3151	202.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-1441201_41	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-1441201_41	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-1441201_41	PF15919,COG1598	N/A	N/A	N/A	N/A
KOfam	UHGV-1441201_42	K14059	188.3	0	int; integrase	N/A
PHROG	UHGV-1441201_42	phrog_1	164.9	0	integrase	integration and excision
UniRef90	UHGV-1441201_42	UniRef90_UPI00164B8B01	389.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1441201_42	1095750.HMPREF9970_1688	235.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1441201_42	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1441201_42	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1441201_42	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1441201	Yes	29,010	37	82	1
UHGV-1432370	No	31,094	37	88	1
UHGV-0160286	No	28,931	37	82	1
UHGV-0240438	No	24,436	38	69	1