vOTU vOTU-023724

vOTU: vOTU-023724

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-023724
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00707 → vGENUS-18438 → vOTU-023724
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp900548615
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1508991
Biosample ID	SAMEA2784473
Genome length (bp)	31,544 bps
CheckV completeness	74.46% (Medium-quality)
CDS count	40
CDS density	93.11%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	15	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp900548615	Total connections	53	Host agreement	92.45

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 74.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1508991_2	UniRef90_R5DCX9	119.0	2.15e-27	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1508991_2	1410650.JHWL01000003_gene2815	148.0	2.39e-38	N/A	N/A
PHROG	UHGV-1508991_3	phrog_372	176.0	0	tail protein	tail
UniRef90	UHGV-1508991_3	UniRef90_UPI001D0897E0	181.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-1508991_3	658088.HMPREF0987_01104	202.0	0	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-1508991_3	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1508991_3	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1508991_3	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1508991_4	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-1508991_5	phrog_511	237.8	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1508991_5	1410650.JHWL01000003_gene2827	354.0	0	N/A	N/A
structural_annotation	UHGV-1508991_5	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1508991_6	phrog_12105	105.4	3.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-1508991_6	1519439.JPJG01000060_gene1891	77.0	1.73e-16	N/A	N/A
PHROG	UHGV-1508991_7	phrog_15239	54.0	0.0000000000000018	N/A	unknown function
PHROG	UHGV-1508991_8	phrog_1357	273.7	0	major head protein	head and packaging
UniRef90	UHGV-1508991_8	UniRef90_A0A1I0BH03	385.0	0	Major capsid protein, N4-gp56 family	N/A
eggNOG-mapper	UHGV-1508991_8	748224.HMPREF9436_01399	356.0	0	N/A	N/A
Pfam	UHGV-1508991_8	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1508991_8	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1508991_8	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1508991_9	phrog_13908	250.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1508991_9	1410650.JHWL01000003_gene2831	136.0	2.59e-35	N/A	N/A
KOfam	UHGV-1508991_10	K07584	44.4	0.000000000003	N/A	N/A
PHROG	UHGV-1508991_10	phrog_4478	43.8	0.0000000000033	peptidase	other
UniRef90	UHGV-1508991_10	UniRef90_UPI0015B63E39	62.4	0.00000000018	ribosomal-processing cysteine protease Prp	N/A
Pfam	UHGV-1508991_10	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1508991_10	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1508991_10	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1508991_11	phrog_156	319.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1508991_11	1410650.JHWL01000003_gene2833	595.0	0	N/A	N/A
structural_annotation	UHGV-1508991_11	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1508991_12	K06909	146.1	2.99878e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1508991_12	phrog_979	149.8	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1508991_12	UniRef90_UPI0010311CEE	650.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1508991_12	1410650.JHWL01000003_gene2834	614.0	0	N/A	N/A
Pfam	UHGV-1508991_12	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1508991_12	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1508991_12	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1508991_13	phrog_2412	97.8	9.4e-29	N/A	unknown function
eggNOG-mapper	UHGV-1508991_13	742738.HMPREF9460_02504	128.0	1.64e-36	N/A	N/A
Pfam	UHGV-1508991_13	PF10685	N/A	N/A	Stress-induced bacterial acidophilic repeat motif	KGG
PHROG	UHGV-1508991_16	phrog_824	111.4	5.3e-33	N/A	unknown function
UniRef90	UHGV-1508991_16	UniRef90_A0A1Q6JHZ3	189.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1508991_16	742738.HMPREF9460_02501	151.0	0	VRR_NUC	N/A
Pfam	UHGV-1508991_16	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1508991_16	PF08774	N/A	N/A	N/A	N/A
KOfam	UHGV-1508991_17	K17677	398.5	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1508991_17	phrog_16	248.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1508991_17	UniRef90_A0A2U1BEG6	751.0	0	Superfamily II DNA or RNA helicase	N/A
eggNOG-mapper	UHGV-1508991_17	742738.HMPREF9460_02499	729.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1508991_17	mREase_IV_00005	124.0	1.2e-36	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1508991_17	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1508991_17	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1508991_17	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1508991_17	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1508991_18	phrog_8841	485.7	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1508991_18	UniRef90_UPI0002DD5FF2	880.0	0	N/A	N/A
eggNOG-mapper	UHGV-1508991_18	742738.HMPREF9460_02495	874.0	0	N/A	N/A
Pfam	UHGV-1508991_18	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1508991_18	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1508991_18	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1508991_18	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-1508991_19	K02316	71.2	1.7e-20	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1508991_19	phrog_11992	105.2	6.6e-31	N/A	unknown function
UniRef90	UHGV-1508991_19	UniRef90_A0A1Q6JHS4	285.0	0	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-1508991_19	1007096.BAGW01000023_gene150	159.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-1508991_19	drt-cluster192	64.2	2.8e-18	DRT	DRT
Pfam	UHGV-1508991_19	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1508991_19	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1508991_19	PF01807	N/A	N/A	N/A	N/A
KOfam	UHGV-1508991_20	K03111	119.6	4e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1508991_20	phrog_44	114.4	1.1e-33	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1508991_20	UniRef90_A0A2U1BEJ1	176.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1508991_20	665956.HMPREF1032_00430	107.0	1.16e-27	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1508991_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1508991_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1508991_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1508991_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1508991_20	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1508991_21	phrog_1227	221.2	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1508991_21	UniRef90_UPI00164E5A62	439.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1508991_21	1007096.BAGW01000023_gene152	422.0	0	N/A	N/A
Pfam	UHGV-1508991_21	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1508991_21	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1508991_21	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1508991_22	phrog_21613	64.3	1.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-1508991_22	1120998.AUFC01000030_gene2214	83.6	2.29e-17	N/A	N/A
KOfam	UHGV-1508991_23	K03546	53.1	0.0000000000000016	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1508991_23	phrog_1499	294.7	0	N/A	unknown function
UniRef90	UHGV-1508991_23	UniRef90_A0A1Q6JHZ0	795.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1508991_23	1007096.BAGW01000023_gene155	608.0	0	DNA recombination	N/A
Pfam	UHGV-1508991_23	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1508991_23	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-1508991_23	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-1508991_24	phrog_1029	157.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1508991_24	552398.HMPREF0866_01625	125.0	2.21e-32	N/A	N/A
structural_annotation	UHGV-1508991_24	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-1508991_25	phrog_997	96.6	2.1e-28	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1508991_25	UniRef90_R6MCS9	99.8	1.09e-24	N/A	N/A
eggNOG-mapper	UHGV-1508991_25	1519439.JPJG01000059_gene1910	125.0	2.04e-35	N/A	N/A
KOfam	UHGV-1508991_28	K07319	99.8	1.9e-29	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1508991_28	phrog_16	166.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1508991_28	UniRef90_A0A1Q6JHY3	1530.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-1508991_28	1007096.BAGW01000031_gene119	1193.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-1508991_28	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1508991_28	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1508991_28	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1508991_30	PF11112,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-1508991_34	UniRef90_UPI001D00C35A	51.2	0.000000325	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1508991_34	1273103.NM10_03301	59.3	0.0000000000373	N/A	N/A
KOfam	UHGV-1508991_35	K01356	165.6	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1508991_35	phrog_4	121.3	9.7e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-1508991_35	UniRef90_A0A1Q6JHR3	345.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1508991_35	1121423.JONT01000002_gene2372	166.0	0	Peptidase S24-like	N/A
Pfam	UHGV-1508991_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1508991_35	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1508991_35	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1508991_35	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-1508991_37	K22300	58.1	1.9e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1508991_37	phrog_2439	47.0	0.00000000000029	transcriptional regulator	transcription regulation
UniRef90	UHGV-1508991_37	UniRef90_UPI0014126470	76.6	1.98e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1508991_37	658655.HMPREF0988_01045	77.8	1.32e-16	Helix-turn-helix domain	N/A
Pfam	UHGV-1508991_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1508991_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1508991_37	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1508991_38	K14059	163.2	0	int; integrase	N/A
PHROG	UHGV-1508991_38	phrog_1	167.2	0	integrase	integration and excision
UniRef90	UHGV-1508991_38	UniRef90_A0A1C5W824	523.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1508991_38	693746.OBV_41260	297.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1508991_38	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1508991_38	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1508991_38	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-1508991_39	K22300	68.3	1.5e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1508991_39	phrog_8	72.6	7.4e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1508991_39	UniRef90_A0A1Q6QB07	135.0	2.23e-39	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1508991_39	1256908.HMPREF0373_01874	114.0	4.44e-32	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1508991_39	retron_type_VI_hth_cluster2_1	40.8	0.000000000062	N/A	Retron
Pfam	UHGV-1508991_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1508991_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1508991_39	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1508991_40	phrog_4980	122.0	4.2e-36	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1508991_40	UniRef90_UPI00102F62AD	90.9	1.15e-19	Ltp family lipoprotein	N/A
eggNOG-mapper	UHGV-1508991_40	1123075.AUDP01000020_gene1514	84.7	4.79e-18	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-1508991_40	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-1508991_40	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1508991_40	PF02631,MF_01114,NF001062,COG2137	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1508991	Yes	31,544	60	74	1
UHGV-1377899	No	22,399	59	55	1
UHGV-0019762	No	20,781	58	51	1