vOTU vOTU-024002

vOTU: vOTU-024002

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-024002
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-04159 → vOTU-024002
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium
Host range breadth	Genus
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0024990
Biosample ID	SAMEA4766010
Genome length (bp)	26,389 bps
CheckV completeness	74.19% (Medium-quality)
CDS count	41
CDS density	93.31%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium	Total connections	44	Host agreement	93.18
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255	Total connections	15	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 74.19)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0024990_2	PF13157,MF_01372,NF040827,COG3542	N/A	N/A	N/A	N/A
PHROG	UHGV-0024990_3	phrog_3558	377.7	0	tail protein	tail
UniRef90	UHGV-0024990_3	UniRef90_UPI0004B53C32	466.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0024990_3	1414720.CBYM010000040_gene1657	466.0	0	Phage minor structural protein, N-terminal	N/A
Pfam	UHGV-0024990_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0024990_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0024990_3	PF06605,PF09931,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024990_4	UniRef90_UPI0004BC5A02	279.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0024990_4	1414720.CBYM010000001_gene708	279.0	0	PFAM Phage tail protein	N/A
COG	UHGV-0024990_4	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0024990_4	PF20195,PF21621,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0024990_5	phrog_991	292.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0024990_5	UniRef90_B1BPR4	486.0	0	Putative phage protein	N/A
eggNOG-mapper	UHGV-0024990_5	1414720.CBYM010000040_gene1655	482.0	0	tail tape measure protein	N/A
Pfam	UHGV-0024990_5	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0024990_5	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0024990_5	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0024990_5	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024990_6	1414720.CBYM010000040_gene1654	135.0	6.57e-40	N/A	N/A
eggNOG-mapper	UHGV-0024990_7	1414720.CBYM010000040_gene1653	145.0	4.2039e-44	N/A	N/A
PHROG	UHGV-0024990_8	phrog_885	82.9	3.1e-24	major tail protein	tail
eggNOG-mapper	UHGV-0024990_8	1414720.CBYM010000040_gene1652	251.0	0	N/A	N/A
structural_annotation	UHGV-0024990_8	PF09393,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0024990_9	phrog_957	75.3	5.9e-22	head protein	head and packaging
UniRef90	UHGV-0024990_9	UniRef90_UPI0004B43D30	150.0	2.38221e-44	N/A	N/A
eggNOG-mapper	UHGV-0024990_9	1414720.CBYM010000040_gene1651	150.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-0024990_9	PF11367,COG4722	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024990_10	UniRef90_A0A133N6J9	218.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0024990_10	1414720.CBYM010000040_gene1650	236.0	0	N/A	N/A
structural_annotation	UHGV-0024990_10	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0024990_11	phrog_1951	94.3	7.1e-28	head-tail adaptor	connector
UniRef90	UHGV-0024990_11	UniRef90_A0A133N6L3	138.0	2.5e-40	Putative phage head-tail adaptor	N/A
eggNOG-mapper	UHGV-0024990_11	931626.Awo_c35070	94.4	1.15e-23	N/A	N/A
structural_annotation	UHGV-0024990_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0024990_12	phrog_5223	120.1	5.3e-36	neck protein	connector
UniRef90	UHGV-0024990_12	UniRef90_UPI001899F211	150.0	1.4013e-45	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0024990_12	1280689.AUJC01000011_gene1523	133.0	8.42e-40	N/A	N/A
NCBIFam	UHGV-0024990_12	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0024990_12	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0024990_13	phrog_10	191.8	0	major head protein	head and packaging
UniRef90	UHGV-0024990_13	UniRef90_UPI00189B715B	770.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0024990_13	1382358.JHVN01000024_gene1707	391.0	0	Phage capsid family	N/A
Pfam	UHGV-0024990_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0024990_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0024990_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0024990_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0024990_14	K01358	121.8	8.1e-36	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0024990_14	phrog_94	220.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0024990_14	UniRef90_UPI001896FC99	474.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0024990_14	500633.CLOHIR_00366	284.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0024990_14	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0024990_14	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0024990_14	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0024990_15	phrog_12	191.7	0	portal protein	head and packaging
UniRef90	UHGV-0024990_15	UniRef90_UPI00189B2CE6	747.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0024990_15	1414720.CBYM010000040_gene1645	578.0	0	Portal protein	N/A
Pfam	UHGV-0024990_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0024990_15	COG0241	N/A	N/A	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	N/A
structural_annotation	UHGV-0024990_15	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0024990_16	phrog_9	376.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0024990_16	UniRef90_UPI0018977AE9	1089.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0024990_16	290402.Cbei_0906	926.0	0	Terminase	N/A
Pfam	UHGV-0024990_16	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0024990_16	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0024990_16	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0024990_16	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0024990_17	phrog_1066	124.3	4.6e-37	N/A	unknown function
eggNOG-mapper	UHGV-0024990_17	573061.Clocel_2441	154.0	0	N/A	N/A
structural_annotation	UHGV-0024990_17	PF05119,TIGR01558	N/A	N/A	N/A	N/A
KOfam	UHGV-0024990_18	K07451	47.3	0.00000000000028	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0024990_18	phrog_4581	108.8	3.6e-32	terminase small subunit	head and packaging
UniRef90	UHGV-0024990_18	UniRef90_UPI0018A90D59	475.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0024990_18	1414720.CBYM010000040_gene1642	313.0	0	HNH nucleases	N/A
Pfam	UHGV-0024990_18	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0024990_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0024990_18	PF13671,MF_03171,NF005251,NF008448,COG4639	N/A	N/A	N/A	N/A
KOfam	UHGV-0024990_19	K04763	119.5	3.9e-35	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0024990_19	phrog_216	143.0	1.3004e-42	integrase	integration and excision
UniRef90	UHGV-0024990_19	UniRef90_UPI0018992E1A	377.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0024990_19	1280689.AUJC01000011_gene1512	183.0	0	Integrase	N/A
Pfam	UHGV-0024990_19	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0024990_19	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0024990_19	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0024990_20	phrog_3928	46.5	0.00000000000049	N/A	unknown function
eggNOG-mapper	UHGV-0024990_20	1414720.CBYM010000040_gene1639	54.7	0.00000000191	N/A	N/A
PHROG	UHGV-0024990_21	phrog_248	50.3	0.000000000000052	transcriptional activator	transcription regulation
UniRef90	UHGV-0024990_21	UniRef90_UPI0018AC4BDF	210.0	0	nitroreductase	N/A
eggNOG-mapper	UHGV-0024990_21	1443122.Z958_05945	97.8	1.98e-24	N/A	N/A
structural_annotation	UHGV-0024990_21	PF08281,MF_00674,TIGR01636,COG1191	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024990_22	1391647.AVSV01000022_gene2542	125.0	9.48e-36	N/A	N/A
structural_annotation	UHGV-0024990_24	PF13719	N/A	N/A	N/A	N/A
PHROG	UHGV-0024990_26	phrog_323	96.7	1.90016e-42	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024990_26	UniRef90_A0A410PPK7	214.0	0	HTH myb-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0024990_26	1196322.A370_05734	229.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
Pfam	UHGV-0024990_26	PF13921	N/A	N/A	Myb-like DNA-binding domain	Myb_DNA-bind_6
Pfam	UHGV-0024990_26	PF07750	N/A	N/A	GcrA cell cycle regulator	GcrA
dbAPIS	UHGV-0024990_26	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0024990_26	PF01710,NF040595,COG5147	N/A	N/A	N/A	N/A
KOfam	UHGV-0024990_27	K03111	119.6	4.1e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0024990_27	phrog_44	123.5	1.8e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024990_27	UniRef90_UPI0018AC5EC3	192.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0024990_27	1414720.CBYM010000001_gene680	178.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0024990_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0024990_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0024990_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0024990_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0024990_27	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0024990_30	K02315	139.1	4.00001e-41	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0024990_30	phrog_50	148.7	4.06377e-44	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024990_30	UniRef90_UPI0018A8ECBE	440.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0024990_30	1414720.CBYM010000001_gene676	411.0	0	PFAM IstB-like ATP binding protein	N/A
Pfam	UHGV-0024990_30	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0024990_30	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0024990_30	PF01695,MF_01919,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0024990_31	phrog_1163	264.3	0	N/A	unknown function
UniRef90	UHGV-0024990_31	UniRef90_UPI0004ADE4E6	291.0	0	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0024990_31	1414720.CBYM010000001_gene675	291.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0024990_31	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
Pfam	UHGV-0024990_31	PF01844	N/A	N/A	HNH endonuclease	HNH
Pfam	UHGV-0024990_31	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0024990_31	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
structural_annotation	UHGV-0024990_31	PF09681,PF09524,TIGR01714,TIGR02220,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-0024990_32	K06376	40.2	0.000000000083	spo0E; stage 0 sporulation regulatory protein	N/A
UniRef90	UHGV-0024990_32	UniRef90_A0A1C6HV05	58.2	0.0000000006	Spo0E like sporulation regulatory protein	N/A
Pfam	UHGV-0024990_32	PF09388	N/A	N/A	Spo0E like sporulation regulatory protein	SpoOE-like
structural_annotation	UHGV-0024990_32	PF09388	N/A	N/A	N/A	N/A
PHROG	UHGV-0024990_34	phrog_373	175.4	0	anti-repressor	transcription regulation
UniRef90	UHGV-0024990_34	UniRef90_UPI0018AC2428	316.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0024990_34	1414720.CBYM010000002_gene582	337.0	0	ORF6C domain	N/A
Pfam	UHGV-0024990_34	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0024990_34	PF10552	N/A	N/A	ORF6C domain	ORF6C
NCBIFam	UHGV-0024990_34	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0024990_34	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0024990_34	PF10552,PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0024990_36	K22299	52.2	0.000000000000013	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0024990_36	phrog_3	44.4	0.0000000000066	transcriptional repressor	transcription regulation
UniRef90	UHGV-0024990_36	UniRef90_UPI00085BBE37	82.0	4.15e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0024990_36	1487921.DP68_08680	77.8	3.48e-18	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0024990_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024990_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0024990_36	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024990_37	UniRef90_UPI00084D082C	52.4	0.000000222	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0024990_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024990_37	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0024990_37	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0024990_38	K07729	65.0	1.4e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0024990_38	phrog_8	97.3	1.9e-28	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024990_38	UniRef90_UPI0004867CC9	108.0	3.65e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0024990_38	1211817.CCAT010000003_gene272	95.9	9.31e-24	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0024990_38	retron_type_VI_hth_cluster2_1	50.9	0.000000000000022	N/A	Retron
Pfam	UHGV-0024990_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024990_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0024990_40	K06400	348.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0024990_40	phrog_95	381.3	0	integrase	integration and excision
UniRef90	UHGV-0024990_40	UniRef90_A0A1C6HWU7	924.0	0	DNA-invertase hin	N/A
eggNOG-mapper	UHGV-0024990_40	1414720.CBYM010000006_gene1187	901.0	0	resolvase	N/A
Pfam	UHGV-0024990_40	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0024990_40	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0024990_40	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0024990_40	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0024990_40	PF00239,PF13408,PF14235,NF041201,COG1961,COG1579	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024990_41	1391647.AVSV01000003_gene1761	55.5	0.0000000142	ABC-type nitrate sulfonate bicarbonate transport	N/A
COG	UHGV-0024990_41	COG0715	N/A	N/A	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0024990	Yes	26,389	28	74	1
UHGV-1789464	No	16,672	28	47	1
UHGV-0308034	No	13,947	29	40	1