vOTU vOTU-024134

vOTU: vOTU-024134

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-024134
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00025 → vSUBFAM-00630 → vOTU-024134
Host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → UBA6448 → UBA6448 sp000437315
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0347370
Biosample ID	SAMN05710192
Genome length (bp)	30,713 bps
CheckV completeness	83.32% (Medium-quality)
CDS count	56
CDS density	92.72%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → UBA6448 → UBA6448 sp000437315	Total connections	53	Host agreement	81.13
PHIST-predicted host lineage	Bacteria → Firmicutes	Total connections	6	Host agreement	66.67

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 83.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0347370_2	K14059	177.5	0	int; integrase	N/A
PHROG	UHGV-0347370_2	phrog_1	176.9	0	integrase	integration and excision
UniRef90	UHGV-0347370_2	UniRef90_A0A843GV89	360.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0347370_2	1232449.BAHV02000018_gene1556	138.0	2.54e-34	Site-specific recombinase, phage integrase family	N/A
Pfam	UHGV-0347370_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0347370_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0347370_2	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_3	phrog_7566	43.6	0.0000000000052	N/A	unknown function
PHROG	UHGV-0347370_5	phrog_7698	121.0	1.1e-35	endolysin	lysis
UniRef90	UHGV-0347370_5	UniRef90_R6IVV6	171.0	0	Possible cell wall-binding protein	N/A
eggNOG-mapper	UHGV-0347370_5	525254.HMPREF0072_1273	161.0	1.33123e-43	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0347370_5	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0347370_5	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0347370_5	PF08230	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_6	phrog_443	59.2	1.2e-16	holin	lysis
UniRef90	UHGV-0347370_6	UniRef90_UPI0004AE7A41	89.7	2.9e-22	holin	N/A
eggNOG-mapper	UHGV-0347370_6	1211844.CBLM010000023_gene976	89.7	4.87e-23	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0347370_6	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0347370_6	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_9	phrog_24267	83.2	1.5e-26	N/A	unknown function
UniRef90	UHGV-0347370_9	UniRef90_R5LJS3	92.8	6.82e-21	Phage structural protein	N/A
eggNOG-mapper	UHGV-0347370_9	553973.CLOHYLEM_06931	89.0	5.25e-19	tail collar domain protein	N/A
COG	UHGV-0347370_9	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0347370_9	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_10	phrog_24267	80.4	2.9e-23	N/A	unknown function
UniRef90	UHGV-0347370_10	UniRef90_U4TBN9	64.3	0.00000000193	Putative prophage LambdaSa04, minor structural protein	N/A
eggNOG-mapper	UHGV-0347370_10	764291.STRUR_0746	81.3	0.00000000000000113	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0347370_10	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0347370_10	COG4675	N/A	N/A	N/A	N/A
UniRef90	UHGV-0347370_12	UniRef90_R7ICZ9	407.0	0	Putative antireceptor	N/A
structural_annotation	UHGV-0347370_13	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
KOfam	UHGV-0347370_14	K20283	44.5	0.00000000000053	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0347370_14	phrog_1535	124.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0347370_14	UniRef90_A0A810PX76	106.0	4.64e-20	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0347370_14	1120746.CCNL01000014_gene2105	92.8	1.76e-16	tape measure	N/A
COG	UHGV-0347370_14	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_15	phrog_706	146.5	1.30321e-43	N/A	unknown function
UniRef90	UHGV-0347370_15	UniRef90_UPI000C7695B7	155.0	1.4013e-44	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0347370_15	645991.Sgly_0348	155.0	2.8026e-45	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0347370_15	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0347370_15	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0347370_16	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_17	phrog_3099	89.9	2.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0347370_17	1232449.BAHV02000010_gene2720	85.5	1.29e-18	N/A	N/A
PHROG	UHGV-0347370_18	phrog_3266	101.8	4.6e-30	tail completion	connector
eggNOG-mapper	UHGV-0347370_18	536233.CLO_0890	74.7	0.00000000000000613	N/A	N/A
structural_annotation	UHGV-0347370_18	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_19	phrog_556	56.7	4e-16	minor head protein	head and packaging
UniRef90	UHGV-0347370_19	UniRef90_UPI00067E9657	86.7	7.28e-19	minor capsid protein	N/A
eggNOG-mapper	UHGV-0347370_19	642492.Clole_0824	81.3	1.38e-17	Minor capsid protein	N/A
structural_annotation	UHGV-0347370_19	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_20	phrog_3366	52.6	0.0000000000000081	N/A	unknown function
structural_annotation	UHGV-0347370_20	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_21	phrog_541	86.0	3.6e-25	head-tail adaptor	connector
UniRef90	UHGV-0347370_21	UniRef90_A0A371AQT0	77.4	9.51e-16	N/A	N/A
eggNOG-mapper	UHGV-0347370_21	1449050.JNLE01000003_gene3888	70.5	0.0000000000000759	N/A	N/A
PHROG	UHGV-0347370_23	phrog_422	205.9	0	major head protein	head and packaging
UniRef90	UHGV-0347370_23	UniRef90_W0U896	224.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0347370_23	1160721.RBI_II00538	224.0	0	N/A	N/A
structural_annotation	UHGV-0347370_23	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_24	phrog_194	46.9	0.00000000000053	head scaffolding protein	head and packaging
UniRef90	UHGV-0347370_24	UniRef90_UPI000360E95E	82.4	2.83e-16	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0347370_24	536233.CLO_0885	74.3	0.0000000000000532	Phage minor structural protein GP20	N/A
Pfam	UHGV-0347370_24	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0347370_24	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_27	phrog_581	232.3	0	minor head protein	head and packaging
UniRef90	UHGV-0347370_27	UniRef90_R5XZV2	232.0	0	Protein gp4	N/A
eggNOG-mapper	UHGV-0347370_27	642492.Clole_0816	161.0	6.82012e-42	N/A	N/A
Pfam	UHGV-0347370_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0347370_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0347370_27	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_28	phrog_533	264.5	0	portal protein	head and packaging
UniRef90	UHGV-0347370_28	UniRef90_R6Y8H1	471.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0347370_28	545697.HMPREF0216_02845	315.0	0	N/A	N/A
Pfam	UHGV-0347370_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0347370_28	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0347370_29	K06909	196.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0347370_29	phrog_10250	111.1	5.9e-33	N/A	unknown function
UniRef90	UHGV-0347370_29	UniRef90_A0A3B8SL24	715.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0347370_29	428127.EUBDOL_01229	513.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0347370_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0347370_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0347370_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0347370_29	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0347370_30	UniRef90_A0A353JAA0	123.0	1.28e-32	Terminase_3 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0347370_30	428125.CLOLEP_01805	99.0	1.07e-24	N/A	N/A
Pfam	UHGV-0347370_30	PF13518	N/A	N/A	Helix-turn-helix domain	HTH_28
structural_annotation	UHGV-0347370_31	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0347370_33	PF15456	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_38	phrog_625	74.9	8e-22	N/A	unknown function
UniRef90	UHGV-0347370_38	UniRef90_A0A373D1H8	121.0	1.79e-33	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0347370_38	1235800.C819_02245	99.4	1.53e-25	N/A	N/A
structural_annotation	UHGV-0347370_38	PF12961	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_40	phrog_111	69.1	6.8e-20	DNA methyltransferase	other
UniRef90	UHGV-0347370_40	UniRef90_A0A1V5ZYJ7	237.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
eggNOG-mapper	UHGV-0347370_40	742767.HMPREF9456_00725	64.7	0.0000000000629	DNA N-6-adenine-methyltransferase (Dam)	N/A
Pfam	UHGV-0347370_40	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
COG	UHGV-0347370_40	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0347370_40	PF13651,MF_00607,NF000077,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_52	phrog_803	57.6	2.4e-16	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0347370_52	UniRef90_R7IG32	58.5	0.000000000616	Orf31	N/A
eggNOG-mapper	UHGV-0347370_52	1229517.AMFD01000018_gene199	46.2	0.00000577	N/A	N/A
structural_annotation	UHGV-0347370_53	PF02559,MF_01194,TIGR02097	N/A	N/A	N/A	N/A
PHROG	UHGV-0347370_55	phrog_478	115.7	2.3e-34	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0347370_55	UniRef90_A0A376GT60	96.3	4.91e-23	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0347370_55	1123302.KB904167_gene507	95.1	2.34e-23	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0347370	Yes	30,713	27	83	1
UHGV-0056223	No	17,332	28	47	1
UHGV-1776290	No	17,332	28	47	1
UHGV-1776292	No	17,332	28	47	1
UHGV-0338213	No	10,083	29	28	1