vOTU vOTU-024177

vOTU: vOTU-024177

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-024177
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Pleeduovirus
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01575 → vGENUS-10920 → vOTU-024177
Host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus paracasei
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0346974
Biosample ID	SAMN05826725
Genome length (bp)	24,505 bps
CheckV completeness	70.77% (Medium-quality)
CDS count	30
CDS density	89.65%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus rhamnosus	Total connections	14	Host agreement	71.43
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus paracasei	Total connections	115	Host agreement	99.13

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 70.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0346974_1	phrog_22474	185.3	0	endolysin	lysis
UniRef90	UHGV-0346974_1	UniRef90_F3MW88	124.0	2.5e-35	N-acetylmuramoyl-L-alanine amidase (Fragment)	N/A
eggNOG-mapper	UHGV-0346974_1	543734.LCABL_10020	202.0	0	Bacteriophage peptidoglycan hydrolase	N/A
Pfam	UHGV-0346974_1	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-0346974_1	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
PHROG	UHGV-0346974_2	phrog_12789	116.0	9.7e-35	N/A	unknown function
Pfam	UHGV-0346974_2	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
PHROG	UHGV-0346974_3	phrog_10091	264.4	0	holin	lysis
UniRef90	UHGV-0346974_3	UniRef90_UPI0009C2B34A	224.0	0	phage holin	N/A
eggNOG-mapper	UHGV-0346974_3	543734.LCABL_10000	206.0	0	Bacteriophage holin	N/A
Pfam	UHGV-0346974_3	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0346974_3	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0346974_3	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0346974_3	PF04531,TIGR01598	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_4	phrog_1009	76.2	2.7e-22	N/A	unknown function
UniRef90	UHGV-0346974_4	UniRef90_S2NA97	131.0	5.47e-38	N/A	N/A
eggNOG-mapper	UHGV-0346974_4	568703.LGG_01141	188.0	0	N/A	N/A
PHROG	UHGV-0346974_5	phrog_2566	117.2	5e-35	N/A	unknown function
UniRef90	UHGV-0346974_5	UniRef90_A8U7X4	67.0	0.000000000000906	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-0346974_5	543734.LCABL_09980	154.0	0	N/A	N/A
PHROG	UHGV-0346974_6	phrog_1401	170.9	0	N/A	unknown function
UniRef90	UHGV-0346974_6	UniRef90_UPI000F775C84	120.0	2.61e-32	N/A	N/A
eggNOG-mapper	UHGV-0346974_6	543734.LCABL_09970	271.0	0	N/A	N/A
Pfam	UHGV-0346974_6	PF07761	N/A	N/A	N/A	DUF1617
structural_annotation	UHGV-0346974_6	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_7	phrog_1330	947.7	0	tail protein	tail
UniRef90	UHGV-0346974_7	UniRef90_A0A858WLX2	2695.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0346974_7	543734.LCABL_11220	2324.0	0	gp58-like protein	N/A
Pfam	UHGV-0346974_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0346974_7	PF07902	N/A	N/A	gp58-like protein	Gp58
NCBIFam	UHGV-0346974_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0346974_7	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-0346974_7	PF14594,PF18957,MF_04116,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_8	phrog_33	78.1	1.9e-22	distal tail protein Dit	tail
UniRef90	UHGV-0346974_8	UniRef90_K0N3Q3	451.0	0	Tail protein	N/A
eggNOG-mapper	UHGV-0346974_8	543734.LCABL_09950	453.0	0	phage tail	N/A
COG	UHGV-0346974_8	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0346974_8	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0346974_9	K10396	42.3	0.000000000005	KIF5; kinesin family member 5	N/A
PHROG	UHGV-0346974_9	phrog_58	373.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0346974_9	UniRef90_K0N3P8	1233.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0346974_9	543734.LCABL_11200	1235.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0346974_9	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0346974_9	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0346974_9	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_10	phrog_4888	222.4	0	tail assembly chaperone	tail
UniRef90	UHGV-0346974_10	UniRef90_K0MTV4	235.0	0	N/A	N/A
eggNOG-mapper	UHGV-0346974_10	543734.LCABL_11180	236.0	0	N/A	N/A
structural_annotation	UHGV-0346974_10	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_11	phrog_11502	118.2	5.4e-35	tail protein	tail
UniRef90	UHGV-0346974_11	UniRef90_A0A6H3FTM3	414.0	0	Major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0346974_11	543734.LCABL_09910	415.0	0	N/A	N/A
structural_annotation	UHGV-0346974_11	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_12	phrog_5	48.3	0.00000000000026	tail completion or Neck1 protein	connector
UniRef90	UHGV-0346974_12	UniRef90_UPI001C8BC514	83.6	2.89e-18	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0346974_12	543734.LCABL_09900	253.0	0	N/A	N/A
Pfam	UHGV-0346974_12	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0346974_12	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0346974_12	TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0346974_13	UniRef90_K0N3E7	221.0	0	N/A	N/A
eggNOG-mapper	UHGV-0346974_13	543734.LCABL_09890	223.0	0	N/A	N/A
structural_annotation	UHGV-0346974_13	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_14	phrog_4014	166.3	0	head-tail adaptor	connector
UniRef90	UHGV-0346974_14	UniRef90_K0N392	227.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0346974_14	543734.LCABL_09880	227.0	0	Phage head-tail joining protein	N/A
Pfam	UHGV-0346974_14	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0346974_14	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0346974_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_15	phrog_4609	148.3	8.40779e-45	N/A	unknown function
UniRef90	UHGV-0346974_15	UniRef90_K6RR14	210.0	0	N/A	N/A
eggNOG-mapper	UHGV-0346974_15	543734.LCABL_09870	212.0	0	N/A	N/A
Pfam	UHGV-0346974_15	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0346974_15	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
PHROG	UHGV-0346974_17	phrog_10	139.2	4.00001e-41	major head protein	head and packaging
UniRef90	UHGV-0346974_17	UniRef90_A0A0P0IV50	775.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0346974_17	543734.LCABL_11110	780.0	0	Phage capsid family	N/A
Pfam	UHGV-0346974_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0346974_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0346974_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0346974_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0346974_18	K01358	126.4	3.2e-37	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0346974_18	phrog_94	210.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0346974_18	UniRef90_A0A6H3FSE6	441.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0346974_18	543734.LCABL_09840	457.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0346974_18	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0346974_18	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0346974_18	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_19	phrog_12	179.1	0	portal protein	head and packaging
UniRef90	UHGV-0346974_19	UniRef90_K6S8Y6	796.0	0	Phage-associated portal protein	N/A
eggNOG-mapper	UHGV-0346974_19	543734.LCABL_09830	806.0	0	Phage portal protein	N/A
Pfam	UHGV-0346974_19	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0346974_19	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0346974_19	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_20	phrog_9	399.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0346974_20	UniRef90_K0MU46	1167.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0346974_20	543734.LCABL_09820	1172.0	0	overlaps another CDS with the same product name	N/A
Pfam	UHGV-0346974_20	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0346974_20	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0346974_20	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0346974_20	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_21	phrog_1066	123.5	7.8e-37	N/A	unknown function
eggNOG-mapper	UHGV-0346974_21	543734.LCABL_09810	234.0	0	N/A	N/A
structural_annotation	UHGV-0346974_21	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_22	phrog_119	84.5	1.4e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0346974_22	UniRef90_K0N9P0	257.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0346974_22	543734.LCABL_09800	261.0	0	HNH endonuclease	N/A
Pfam	UHGV-0346974_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0346974_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0346974_23	phrog_3136	140.4	5.79997e-42	N/A	unknown function
UniRef90	UHGV-0346974_23	UniRef90_A0A6H3FUI3	250.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0346974_23	657309.BXY_06280	133.0	1.34e-38	ASCH	N/A
Pfam	UHGV-0346974_23	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0346974_23	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0346974_23	PF12961,NF002008,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_24	phrog_6345	493.2	0	N/A	unknown function
UniRef90	UHGV-0346974_24	UniRef90_A0A181ZKE0	287.0	0	Acyl-coa n-acyltransferase	N/A
eggNOG-mapper	UHGV-0346974_24	1121342.AUCO01000004_gene652	277.0	0	acetyltransferase	N/A
COG	UHGV-0346974_24	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
structural_annotation	UHGV-0346974_24	PF00583,PF01878,MF_02210,MF_00771,NF000482,NF002008,COG0456,COG2947	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_25	phrog_8834	127.5	3.2e-38	N/A	unknown function
UniRef90	UHGV-0346974_25	UniRef90_C2JVI1	281.0	0	Phage transcriptional regulator, ArpU family	N/A
eggNOG-mapper	UHGV-0346974_25	543734.LCABL_05720	206.0	0	N/A	N/A
NCBIFam	UHGV-0346974_25	TIGR01637.1	N/A	N/A	ArpU family phage packaging/lysis transcriptional regulator	N/A
structural_annotation	UHGV-0346974_25	PF05263,MF_00674,TIGR01637,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_26	phrog_4583	41.0	0.000000000027	transcriptional repressor	transcription regulation
UniRef90	UHGV-0346974_26	UniRef90_UPI000F4E1EBF	133.0	2.32e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0346974_26	1381123.AYOD01000010_gene330	49.7	0.000000438	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0346974_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0346974_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0346974_26	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0346974_27	phrog_19732	165.0	0	N/A	unknown function
PHROG	UHGV-0346974_28	phrog_11564	123.0	8.7e-37	DNA methyltransferase	other
UniRef90	UHGV-0346974_28	UniRef90_Q8LTB0	190.0	0	Putative methyltransferase	N/A
eggNOG-mapper	UHGV-0346974_28	1423816.BACQ01000027_gene953	108.0	5.43e-29	DNA (cytosine-5-)-methyltransferase activity	N/A
PADLOC	UHGV-0346974_28	MTase_II_00074	87.3	3.5e-25	Type II methyltransferase	RM
COG	UHGV-0346974_28	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
PHROG	UHGV-0346974_30	phrog_192	49.2	0.0000000000001	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0346974_30	UniRef90_A0A0H0YPM1	294.0	0	DNA polymerase III subunit epsilon	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0346974	Yes	24,505	46	71	1
UHGV-1484205	No	25,362	46	73	1
UHGV-1747283	No	10,820	47	31	1