vOTU vOTU-024215

vOTU: vOTU-024215

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-024215
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00022 → vGENUS-00301 → vOTU-024215
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0357852
Biosample ID	N/A
Genome length (bp)	44,797 bps
CheckV completeness	56.59% (Medium-quality)
CDS count	63
CDS density	82.35%
tRNA count	6
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	52	Host agreement	75
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	13	Host agreement	92.31

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 56.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0357852_2	K06400	288.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0357852_2	phrog_95	297.1	0	integrase	integration and excision
UniRef90	UHGV-0357852_2	UniRef90_UPI001D084942	699.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0357852_2	1384065.JAGS01000001_gene1134	267.0	0	N/A	N/A
Pfam	UHGV-0357852_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0357852_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0357852_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0357852_2	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0357852_3	phrog_8680	190.5	0	N/A	unknown function
UniRef90	UHGV-0357852_3	UniRef90_A0A412EMT7	337.0	0	N/A	N/A
eggNOG-mapper	UHGV-0357852_3	476272.RUMHYD_01896	199.0	0	N/A	N/A
Pfam	UHGV-0357852_3	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0357852_3	PF14386	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0357852_6	397290.C810_01347	50.1	0.000000195	N/A	N/A
structural_annotation	UHGV-0357852_6	PF18267	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0357852_9	PF19807,NF010256,COG4453	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0357852_10	476272.RUMHYD_01907	102.0	2.36e-24	N/A	N/A
PHROG	UHGV-0357852_17	phrog_6730	70.6	1.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0357852_17	1136534.J9PTY8_9CAUD	59.7	0.000000000174	N/A	N/A
structural_annotation	UHGV-0357852_17	PF00684	N/A	N/A	N/A	N/A
KOfam	UHGV-0357852_28	K03744	144.5	8.60397e-43	lemA; LemA protein	N/A
PHROG	UHGV-0357852_28	phrog_1383	153.0	1.4013e-45	virion structural protein	head and packaging
UniRef90	UHGV-0357852_28	UniRef90_A0A414SKJ0	251.0	0	LemA family protein	N/A
eggNOG-mapper	UHGV-0357852_28	742735.HMPREF9467_00879	233.0	0	LemA family	N/A
Pfam	UHGV-0357852_28	PF04011	N/A	N/A	LemA family	LemA
COG	UHGV-0357852_28	COG1704	N/A	N/A	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	N/A
structural_annotation	UHGV-0357852_28	PF04011,NF040966,COG1704	N/A	N/A	N/A	N/A
PHROG	UHGV-0357852_29	phrog_3886	279.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0357852_29	742733.HMPREF9469_05056	319.0	0	N/A	N/A
PHROG	UHGV-0357852_30	phrog_38	176.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0357852_30	UniRef90_A0A8D9PG33	509.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0357852_30	1232453.BAIF02000058_gene1623	479.0	0	TIGRFAM Phage	N/A
COG	UHGV-0357852_30	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0357852_30	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0357852_31	phrog_36	70.4	3.4e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0357852_31	UniRef90_A0A412EN86	243.0	0	N/A	N/A
eggNOG-mapper	UHGV-0357852_31	97138.C820_00221	75.9	0.00000000000000136	sigma factor activity	N/A
Pfam	UHGV-0357852_31	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0357852_31	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0357852_31	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0357852_32	phrog_64	184.8	0	portal protein	head and packaging
UniRef90	UHGV-0357852_32	UniRef90_A0A1C5RXC5	972.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-0357852_32	1298920.KI911353_gene2663	599.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0357852_32	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0357852_32	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0357852_33	1298920.KI911353_gene2662	75.9	0.0000000000000383	N/A	N/A
PHROG	UHGV-0357852_34	phrog_909	65.3	8.5e-19	major head protein	head and packaging
UniRef90	UHGV-0357852_34	UniRef90_K1TUL5	58.2	0.0000000156	N/A	N/A
eggNOG-mapper	UHGV-0357852_34	1497679.EP56_02915	61.6	0.0000000000837	N/A	N/A
structural_annotation	UHGV-0357852_34	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0357852_35	phrog_29	143.6	1.3999e-42	major head protein	head and packaging
UniRef90	UHGV-0357852_35	UniRef90_A0A0E2H7J5	398.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0357852_35	1232443.BAIA02000078_gene29	286.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0357852_35	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0357852_35	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0357852_36	476272.RUMHYD_01948	119.0	2.13e-33	N/A	N/A
PHROG	UHGV-0357852_37	phrog_937	51.3	0.00000000000001	hemolysin	other
UniRef90	UHGV-0357852_38	UniRef90_A0A412EMQ9	170.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0357852_38	476272.RUMHYD_01951	60.5	0.0000000000516	N/A	N/A
structural_annotation	UHGV-0357852_38	PF04545,MF_00674,NF001073,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0357852_39	phrog_21718	64.4	1.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0357852_39	476272.RUMHYD_01952	85.5	1.07e-18	N/A	N/A
PHROG	UHGV-0357852_41	phrog_16490	225.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0357852_41	658655.HMPREF0988_00917	184.0	0	N/A	N/A
eggNOG-mapper	UHGV-0357852_42	1408437.JNJN01000043_gene802	163.0	0	N/A	N/A
PHROG	UHGV-0357852_44	phrog_355	55.9	7.6e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0357852_44	UniRef90_UPI000E473058	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0357852_44	397290.C810_05229	173.0	0	N/A	N/A
Pfam	UHGV-0357852_44	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0357852_44	PF14359	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0357852_45	397290.C810_01336	68.2	0.000000000000384	N/A	N/A
structural_annotation	UHGV-0357852_46	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0357852_47	476272.RUMHYD_01963	96.7	8.1e-23	N/A	N/A
AcrCatalog	UHGV-0357852_47	cluster_24841	79.0	1.65e-20	NA	N/A
structural_annotation	UHGV-0357852_48	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0357852_49	phrog_1129	85.5	3.3e-25	holin	lysis
UniRef90	UHGV-0357852_49	UniRef90_UPI001D072DD9	143.0	1.46015e-42	phage holin family protein	N/A
eggNOG-mapper	UHGV-0357852_49	411460.RUMTOR_01325	133.0	1.58e-39	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0357852_49	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0357852_49	PF16079	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0357852_50	476272.RUMHYD_01968	137.0	2.39e-39	N/A	N/A
structural_annotation	UHGV-0357852_50	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0357852_53	phrog_28918	464.3	0	N/A	unknown function
UniRef90	UHGV-0357852_53	UniRef90_A0A1C5RYZ6	1822.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0357852_53	1298920.KI911353_gene2649	379.0	0	tape measure	N/A
COG	UHGV-0357852_53	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0357852_54	phrog_6493	52.9	0.0000000000000035	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0357852_54	1397699.JNIS01000001_gene2447	82.4	0.00000000000000642	Conserved phage C-terminus (Phg_2220_C)	N/A
structural_annotation	UHGV-0357852_54	PF07106,NF040642,COG3355	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0357852_55	1235793.C809_00537	55.8	0.00000000349	N/A	N/A
eggNOG-mapper	UHGV-0357852_56	411473.RUMCAL_02525	149.0	2.8026e-45	N/A	N/A
PHROG	UHGV-0357852_57	phrog_1194	125.3	2.6e-37	N/A	unknown function
eggNOG-mapper	UHGV-0357852_57	1121866.AUGK01000003_gene1438	103.0	6.31e-27	N/A	N/A
Pfam	UHGV-0357852_57	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0357852_57	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0357852_58	K08131	50.0	0.0000000000000092	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-0357852_58	phrog_6616	689.8	0	tail protein	tail
UniRef90	UHGV-0357852_58	UniRef90_A0A1C5RZB4	1739.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0357852_58	1121866.AUGK01000003_gene1439	300.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0357852_58	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0357852_58	PF21470	N/A	N/A	Minor structural protein 5-like, C-terminal domain	BppU-like_C
COG	UHGV-0357852_58	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0357852_58	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0357852_61	97139.C824_00239	171.0	0	N/A	N/A
structural_annotation	UHGV-0357852_61	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0357852_62	97139.C824_00240	121.0	1.64e-32	N/A	N/A
structural_annotation	UHGV-0357852_62	PF05635,NF008912	N/A	N/A	N/A	N/A
KOfam	UHGV-0357852_63	K00986	117.9	1.1e-34	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0357852_63	phrog_1423	184.0	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0357852_63	UniRef90_A0A349YHH5	371.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
eggNOG-mapper	UHGV-0357852_63	665950.HMPREF1025_01556	265.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0357852_63	icity0040	107.1	3e-31	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0357852_63	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0357852_63	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0357852_63	PF00078,TIGR04416,COG3344	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0357852	Yes	44,797	39	57	1
UHGV-2077575	No	24,698	38	31	1
UHGV-2074723	No	16,936	38	22	1