vOTU vOTU-024232

vOTU: vOTU-024232

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-024232
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vOTU-024232
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp001916075
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0008150
Biosample ID	SAMEA4765870
Genome length (bp)	25,575 bps
CheckV completeness	75.70% (Medium-quality)
CDS count	40
CDS density	90.38%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp001916075	Total connections	7	Host agreement	71.43
PHIST-predicted host lineage	Bacteria → Firmicutes_A	Total connections	3	Host agreement	33.33

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 75.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0008150_1	1414720.CBYM010000002_gene596	57.4	0.000000000164	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily	N/A
COG	UHGV-0008150_1	COG2606	N/A	N/A	Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC	N/A
KOfam	UHGV-0008150_2	K06400	272.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0008150_2	phrog_95	290.5	0	integrase	integration and excision
UniRef90	UHGV-0008150_2	UniRef90_A0A1C6JLN1	668.0	0	DNA-invertase hin	N/A
eggNOG-mapper	UHGV-0008150_2	1414720.CBYM010000002_gene595	668.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0008150_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0008150_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0008150_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0008150_2	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0008150_3	K18830	69.9	4.3e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0008150_3	phrog_4	47.5	0.00000000000039	transcriptional repressor	transcription regulation
UniRef90	UHGV-0008150_3	UniRef90_A0A1C6JLU0	135.0	8.28e-39	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-0008150_3	1414720.CBYM010000002_gene594	135.0	1.39e-39	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0008150_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0008150_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0008150_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0008150_6	K07741	112.6	8.1e-33	antB; anti-repressor protein	N/A
PHROG	UHGV-0008150_6	phrog_373	132.2	4.4e-39	anti-repressor	transcription regulation
UniRef90	UHGV-0008150_6	UniRef90_A0A0A7RVQ9	239.0	0	Anti-repressor	N/A
eggNOG-mapper	UHGV-0008150_6	1567013.A0A0A7RVQ9_9CAUD	239.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0008150_6	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0008150_6	PF10552	N/A	N/A	ORF6C domain	ORF6C
structural_annotation	UHGV-0008150_6	PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-0008150_10	phrog_10469	312.3	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008150_10	UniRef90_A0A6B3YXQ4	318.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0008150_10	536232.CLM_1634	318.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0008150_10	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0008150_10	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0008150_10	PF09681,PF09524,TIGR01714,TIGR02220,COG3756	N/A	N/A	N/A	N/A
KOfam	UHGV-0008150_11	K02315	209.0	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0008150_11	phrog_50	190.9	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008150_11	UniRef90_A0A8I0A8M5	389.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0008150_11	536232.CLM_2562	280.0	0	Bacterial dnaA protein	N/A
Pfam	UHGV-0008150_11	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0008150_11	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0008150_11	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0008150_11	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0008150_12	phrog_59	106.7	1.5e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008150_12	UniRef90_UPI0018E44567	189.0	0	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0008150_12	1415774.U728_1689	176.0	0	HNH endonuclease	N/A
PADLOC	UHGV-0008150_12	HEase_00016	47.9	0.00000000000042	homing endonuclease	RM
Pfam	UHGV-0008150_12	PF13392	N/A	N/A	HNH endonuclease	HNH_3
PHROG	UHGV-0008150_13	phrog_44	41.8	0.000000000028	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008150_13	UniRef90_A0A316M2K7	66.6	0.0000000000017	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0008150_13	536233.CLO_1809	77.4	1.67e-17	Single-stranded DNA-binding protein	N/A
COG	UHGV-0008150_13	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
PHROG	UHGV-0008150_16	phrog_10157	68.8	9.6e-20	N/A	unknown function
UniRef90	UHGV-0008150_16	UniRef90_UPI0005912657	112.0	3.5e-29	transcriptional regulator	N/A
structural_annotation	UHGV-0008150_16	PF04545,MF_00674,NF009180,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0008150_17	K04763	99.7	3.9e-29	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0008150_17	phrog_216	136.3	1.4e-40	integrase	integration and excision
UniRef90	UHGV-0008150_17	UniRef90_UPI0018992E1A	212.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0008150_17	1414720.CBYM010000040_gene1640	176.0	0	Integrase	N/A
Pfam	UHGV-0008150_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0008150_17	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0008150_17	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0008150_19	phrog_119	66.0	5.4e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008150_19	UniRef90_UPI00189AB2E4	164.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0008150_19	290402.Cbei_0903	161.0	0	HNH nucleases	N/A
Pfam	UHGV-0008150_19	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0008150_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0008150_20	phrog_1066	129.9	8.7e-39	N/A	unknown function
eggNOG-mapper	UHGV-0008150_20	290402.Cbei_0905	171.0	0	N/A	N/A
structural_annotation	UHGV-0008150_20	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0008150_21	phrog_9	388.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0008150_21	UniRef90_UPI000F049817	968.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0008150_21	573061.Clocel_2440	920.0	0	Terminase	N/A
Pfam	UHGV-0008150_21	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0008150_21	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0008150_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0008150_21	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0008150_22	phrog_12	160.4	0	portal protein	head and packaging
UniRef90	UHGV-0008150_22	UniRef90_A0A162UWL2	360.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0008150_22	573061.Clocel_2439	340.0	0	Portal protein	N/A
Pfam	UHGV-0008150_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0008150_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0008150_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0008150_23	K06904	157.5	0	N/A	N/A
PHROG	UHGV-0008150_23	phrog_80	172.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0008150_23	UniRef90_A0A1S8PRR3	233.0	0	Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-0008150_23	573061.Clocel_2438	233.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0008150_23	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0008150_23	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0008150_23	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0008150_23	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0008150_24	phrog_10	126.8	2.3e-37	major head protein	head and packaging
UniRef90	UHGV-0008150_24	UniRef90_A0A3N9UIU8	466.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0008150_24	198094.BA_3784	410.0	0	Phage capsid family	N/A
Pfam	UHGV-0008150_24	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0008150_24	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0008150_24	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0008150_24	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0008150_25	phrog_5223	111.8	2.2e-33	neck protein	connector
UniRef90	UHGV-0008150_25	UniRef90_A0A6B0DX30	131.0	5.55e-38	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0008150_25	1280689.AUJC01000011_gene1523	120.0	9.04e-35	N/A	N/A
NCBIFam	UHGV-0008150_25	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0008150_25	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0008150_26	phrog_1951	106.0	1.7e-31	head-tail adaptor	connector
UniRef90	UHGV-0008150_26	UniRef90_A0A133N6L3	142.0	5.72991e-42	Putative phage head-tail adaptor	N/A
eggNOG-mapper	UHGV-0008150_26	931626.Awo_c35070	102.0	1.59e-26	N/A	N/A
NCBIFam	UHGV-0008150_26	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0008150_26	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008150_27	UniRef90_A0A133N6J9	147.0	3.1249e-43	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0008150_27	1414720.CBYM010000040_gene1650	157.0	0	N/A	N/A
PHROG	UHGV-0008150_28	phrog_314	64.1	2.3e-18	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008150_28	UniRef90_UPI000CF201CD	100.0	2.23e-21	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0008150_28	702450.CUW_1845	84.0	2.3e-16	NUMOD3 motif (2 copies)	N/A
NCBIFam	UHGV-0008150_28	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
structural_annotation	UHGV-0008150_28	PF19835,PF07460,PF20987,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0008150_29	phrog_957	74.5	1.1e-21	head protein	head and packaging
UniRef90	UHGV-0008150_29	UniRef90_UPI0004B43D30	168.0	0	N/A	N/A
eggNOG-mapper	UHGV-0008150_29	1414720.CBYM010000040_gene1651	168.0	0	N/A	N/A
Pfam	UHGV-0008150_29	PF11367	N/A	N/A	N/A	DUF3168
structural_annotation	UHGV-0008150_29	PF11367,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0008150_30	phrog_885	87.5	1.3e-25	major tail protein	tail
eggNOG-mapper	UHGV-0008150_30	1414720.CBYM010000040_gene1652	255.0	0	N/A	N/A
structural_annotation	UHGV-0008150_30	PF09393,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0008150_31	1414720.CBYM010000040_gene1653	129.0	2.22e-37	N/A	N/A
eggNOG-mapper	UHGV-0008150_32	1414720.CBYM010000040_gene1654	97.4	3.02e-25	N/A	N/A
PHROG	UHGV-0008150_33	phrog_991	99.7	4.3e-33	tail length tape measure protein	tail
UniRef90	UHGV-0008150_33	UniRef90_A0A6A7KA30	161.0	4.4e-38	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0008150_33	1414720.CBYM010000001_gene707	191.0	0	tail tape measure protein	N/A
COG	UHGV-0008150_33	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0008150_34	phrog_33	73.3	3.1e-22	distal tail protein Dit	tail
UniRef90	UHGV-0008150_34	UniRef90_A0A8I0AEB5	373.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0008150_34	1414720.CBYM010000001_gene708	306.0	0	PFAM Phage tail protein	N/A
Pfam	UHGV-0008150_34	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0008150_34	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0008150_34	PF20195,PF21621,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0008150_35	phrog_3558	420.6	0	tail protein	tail
UniRef90	UHGV-0008150_35	UniRef90_A0A1C6KQ97	640.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0008150_35	1414720.CBYM010000040_gene1657	439.0	0	Phage minor structural protein, N-terminal	N/A
Pfam	UHGV-0008150_35	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0008150_35	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0008150_35	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0008150_35	PF06605,PF09931,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008150_36	PF13157,MF_01372,NF040827,COG3542	N/A	N/A	N/A	N/A
KOfam	UHGV-0008150_37	K10804	75.2	9.5e-22	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-0008150_37	phrog_8460	148.1	4.48416e-44	tail fiber protein	tail
UniRef90	UHGV-0008150_37	UniRef90_UPI00155DA81E	265.0	0	GDSL-type esterase/lipase family protein	N/A
eggNOG-mapper	UHGV-0008150_37	1484479.DI14_04675	241.0	0	GDSL-like Lipase/Acylhydrolase	N/A
Pfam	UHGV-0008150_37	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0008150_37	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-0008150_38	PF09855,COG3478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0008150_39	1121447.JONL01000012_gene3403	71.6	0.000000000000868	N/A	N/A
Pfam	UHGV-0008150_39	PF20712	N/A	N/A	Cyanobacterial TRADD-N associated 2-Transmembrane domain	CyanoTRADDas_TM
PHROG	UHGV-0008150_40	phrog_199	46.0	0.0000000000005	holin	lysis
UniRef90	UHGV-0008150_40	UniRef90_A0A8I0A6Y0	222.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0008150_40	398512.JQKC01000003_gene5035	55.8	0.0000000466	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0008150_40	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0008150_40	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0008150_40	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0008150_40	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0008150	Yes	25,575	29	76	1
UHGV-0032481	No	22,837	29	70	1
UHGV-0362023	No	11,247	30	28	1