vOTU vOTU-024396

vOTU: vOTU-024396

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-024396
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00114 → vOTU-024396
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium neonatale
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0428909
Biosample ID	N/A
Genome length (bp)	26,366 bps
CheckV completeness	56.93% (Medium-quality)
CDS count	29
CDS density	90.70%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium neonatale	Total connections	3	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium neonatale	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 56.93)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0428909_1	phrog_2538	66.2	5.3e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0428909_1	UniRef90_UPI001C0EDA98	196.0	0	IS630 transposase-related protein	N/A
eggNOG-mapper	UHGV-0428909_1	1280692.AUJL01000004_gene860	140.0	6.78004e-41	Helix-turn-helix domain of resolvase	N/A
Pfam	UHGV-0428909_1	PF01710	N/A	N/A	Transposase	HTH_Tnp_IS630
structural_annotation	UHGV-0428909_1	PF13384,COG3677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0428909_2	1196322.A370_01153	55.1	0.00000000122	N/A	N/A
eggNOG-mapper	UHGV-0428909_3	931276.Cspa_c57090	275.0	0	N/A	N/A
PHROG	UHGV-0428909_4	phrog_14112	362.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0428909_4	573061.Clocel_3549	980.0	0	TIGRFAM Phage	N/A
COG	UHGV-0428909_4	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0428909_4	PF17289,PF03354,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0428909_5	phrog_64	305.2	0	portal protein	head and packaging
UniRef90	UHGV-0428909_5	UniRef90_A0A3P6JT25	866.0	0	Phage portal protein, SPP1 Gp6	N/A
eggNOG-mapper	UHGV-0428909_5	1280692.AUJL01000004_gene853	731.0	0	portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0428909_5	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0428909_5	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0428909_6	phrog_115	83.4	1e-24	minor head protein	head and packaging
UniRef90	UHGV-0428909_6	UniRef90_A0A3P6KYM9	437.0	0	Phage putative head morphogenesis protein, SPP1 gp7 family	N/A
eggNOG-mapper	UHGV-0428909_6	1280692.AUJL01000004_gene852	176.0	0	head morphogenesis protein, SPP1 gp7 family	N/A
COG	UHGV-0428909_6	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0428909_6	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0428909_8	phrog_172	66.9	4e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-0428909_8	UniRef90_UPI001DDFF677	381.0	0	N/A	N/A
eggNOG-mapper	UHGV-0428909_8	1345695.CLSA_c29940	213.0	0	N/A	N/A
Pfam	UHGV-0428909_8	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0428909_8	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0428909_9	phrog_909	87.9	9e-26	major head protein	head and packaging
UniRef90	UHGV-0428909_9	UniRef90_UPI001D2572A1	204.0	0	head decoration protein	N/A
eggNOG-mapper	UHGV-0428909_9	1280692.AUJL01000004_gene847	207.0	0	N/A	N/A
PHROG	UHGV-0428909_10	phrog_29	235.1	0	major head protein	head and packaging
UniRef90	UHGV-0428909_10	UniRef90_A0A3P6JQ83	658.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0428909_10	1345695.CLSA_c29920	598.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0428909_10	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0428909_10	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0428909_11	K03988	44.2	0.0000000000029	C1QG; complement C1q subcomponent subunit C	N/A
PHROG	UHGV-0428909_11	phrog_6320	51.4	0.000000000000018	tail fiber protein	tail
UniRef90	UHGV-0428909_11	UniRef90_UPI00164BB495	117.0	4.44e-32	collagen-like protein	N/A
Pfam	UHGV-0428909_11	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
UniRef90	UHGV-0428909_12	UniRef90_UPI0013C967CA	97.1	1.92e-24	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0428909_12	1540257.JQMW01000013_gene740	98.6	7.7e-26	N/A	N/A
PHROG	UHGV-0428909_13	phrog_3366	130.2	9.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-0428909_13	1280692.AUJL01000004_gene843	218.0	0	N/A	N/A
Pfam	UHGV-0428909_13	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0428909_13	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0428909_14	phrog_556	66.0	5.2e-19	minor head protein	head and packaging
UniRef90	UHGV-0428909_14	UniRef90_A0A3P6JQA2	209.0	0	Minor capsid	N/A
eggNOG-mapper	UHGV-0428909_14	573061.Clocel_3538	167.0	0	Minor capsid protein	N/A
Pfam	UHGV-0428909_14	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0428909_14	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0428909_15	phrog_3266	173.5	0	tail completion	connector
UniRef90	UHGV-0428909_15	UniRef90_UPI001C0E30AF	221.0	0	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0428909_15	1540257.JQMW01000013_gene737	196.0	0	N/A	N/A
structural_annotation	UHGV-0428909_15	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0428909_16	phrog_3099	203.4	0	N/A	unknown function
UniRef90	UHGV-0428909_16	UniRef90_A0A3P6KYP0	513.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0428909_16	1151292.QEW_4530	272.0	0	N/A	N/A
Pfam	UHGV-0428909_16	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0428909_16	PF06199,PF18316,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0428909_17	phrog_4450	48.6	0.00000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0428909_17	536233.CLO_0892	54.7	0.0000001	N/A	N/A
Pfam	UHGV-0428909_17	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0428909_17	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0428909_18	phrog_706	196.9	0	N/A	unknown function
UniRef90	UHGV-0428909_18	UniRef90_A0A3P6KFM1	394.0	0	Protein gp15	N/A
eggNOG-mapper	UHGV-0428909_18	1540257.JQMW01000013_gene734	245.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0428909_18	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0428909_18	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0428909_19	phrog_17658	113.6	1.6e-33	N/A	unknown function
eggNOG-mapper	UHGV-0428909_19	536233.CLO_0894	241.0	0	N/A	N/A
structural_annotation	UHGV-0428909_19	PF18116	N/A	N/A	N/A	N/A
KOfam	UHGV-0428909_20	K10400	42.5	0.0000000000043	KIF15; kinesin family member 15	N/A
PHROG	UHGV-0428909_20	phrog_13339	419.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0428909_20	UniRef90_A0A3P6JQ92	1971.0	0	N/A	N/A
eggNOG-mapper	UHGV-0428909_20	642492.Clole_0830	370.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0428909_20	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0428909_20	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0428909_20	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0428909_20	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0428909_21	phrog_33	73.6	4.1e-21	distal tail protein Dit	tail
UniRef90	UHGV-0428909_21	UniRef90_A0A3P6KJQ0	471.0	0	Phage putative tail component	N/A
eggNOG-mapper	UHGV-0428909_21	536233.CLO_1578	282.0	0	N/A	N/A
COG	UHGV-0428909_21	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0428909_21	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0428909_22	phrog_33972	310.1	0	tail protein	tail
UniRef90	UHGV-0428909_22	UniRef90_A0A3P6KWN8	1296.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0428909_22	632245.CLP_1660	358.0	0	Phage minor structural protein	N/A
NCBIFam	UHGV-0428909_22	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0428909_22	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0428909_22	PF06605,PF18994,PF18463,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0428909_23	phrog_18444	64.1	1.4e-18	N/A	unknown function
UniRef90	UHGV-0428909_23	UniRef90_UPI0011788049	48.5	0.00000637	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0428909_23	931276.Cspa_c07570	58.2	0.000000000147	N/A	N/A
UniRef90	UHGV-0428909_24	UniRef90_A0A3P6JQB1	568.0	0	Chromosome segregation protein SMC	N/A
Pfam	UHGV-0428909_24	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-0428909_25	phrog_4492	78.9	4.8e-23	tail fiber protein	tail
UniRef90	UHGV-0428909_25	UniRef90_UPI001DB7DE1F	74.7	0.0000000000851	phage tail protein	N/A
eggNOG-mapper	UHGV-0428909_25	931276.Cspa_c07580	87.4	0.00000000000000184	nuclear chromosome segregation	N/A
COG	UHGV-0428909_25	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0428909_26	phrog_24451	131.5	2.6e-39	N/A	unknown function
UniRef90	UHGV-0428909_26	UniRef90_A0A3P6KYQ0	211.0	0	N/A	N/A
eggNOG-mapper	UHGV-0428909_26	931276.Cspa_c07590	116.0	4.59e-32	N/A	N/A
UniRef90	UHGV-0428909_27	UniRef90_A0A2A7MJP2	86.3	1.38e-21	XkdX family protein	N/A
Pfam	UHGV-0428909_27	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0428909_27	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
PHROG	UHGV-0428909_28	phrog_37799	73.0	1.7e-21	N/A	unknown function
UniRef90	UHGV-0428909_28	UniRef90_A0A3P6K437	270.0	0	Cell wall hydrolase protein	N/A
eggNOG-mapper	UHGV-0428909_28	1151292.QEW_0990	150.0	8.40779e-45	Bacteriophage holin family	N/A
Pfam	UHGV-0428909_28	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0428909_28	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0428909_28	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0428909_28	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0428909_29	K07273	200.2	0	acm; lysozyme	N/A
PHROG	UHGV-0428909_29	phrog_6219	176.4	0	endolysin	lysis
UniRef90	UHGV-0428909_29	UniRef90_A0A3P6JZ30	1051.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0428909_29	290402.Cbei_0931	272.0	0	family 25	N/A
Pfam	UHGV-0428909_29	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
Pfam	UHGV-0428909_29	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
Pfam	UHGV-0428909_29	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0428909_29	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0428909	Yes	26,366	30	57	1
UHGV-0392464	No	21,888	30	47	1
UHGV-0406089	No	20,728	30	45	1