vOTU vOTU-024400

vOTU: vOTU-024400

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-024400
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Copromonas → Copromonas sp000435795
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00195 → vGENUS-01178 → vOTU-024400
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Copromonas → Copromonas sp000435795
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0392967
Biosample ID	N/A
Genome length (bp)	26,840 bps
CheckV completeness	60.87% (Medium-quality)
CDS count	48
CDS density	93.06%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Copromonas → Copromonas sp000435795	Total connections	229	Host agreement	78.17
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Copromonas → Copromonas sp000435795	Total connections	10	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 60.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0392967_2	phrog_37916	81.0	9.4e-24	N/A	unknown function
PHROG	UHGV-0392967_3	phrog_374	208.3	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0392967_3	UniRef90_C9KJA8	207.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0392967_3	500635.MITSMUL_03105	207.0	0	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
COG	UHGV-0392967_3	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0392967_3	PF17375	N/A	N/A	N/A	N/A
KOfam	UHGV-0392967_4	K06909	115.6	6.3e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0392967_4	phrog_3717	96.6	2.6e-28	terminase large subunit	head and packaging
UniRef90	UHGV-0392967_4	UniRef90_A0A0U5PLY3	238.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0392967_4	1235800.C819_00493	178.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0392967_4	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0392967_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0392967_4	PF04466	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_5	phrog_59	163.1	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0392967_5	UniRef90_A0A414AG65	268.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0392967_5	1260356.D920_01718	134.0	1.29e-37	HNH endonuclease	N/A
PADLOC	UHGV-0392967_5	HEase_00016	84.9	1.9e-24	homing endonuclease	RM
Pfam	UHGV-0392967_5	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0392967_5	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0392967_5	PF07463	N/A	N/A	N/A	N/A
KOfam	UHGV-0392967_6	K06909	197.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0392967_6	phrog_5653	91.9	5.5e-27	terminase large subunit	head and packaging
UniRef90	UHGV-0392967_6	UniRef90_R6RP56	566.0	0	Phage terminase large subunit pbsx family	N/A
eggNOG-mapper	UHGV-0392967_6	33035.JPJF01000106_gene3136	280.0	0	Terminase small subunit	N/A
Pfam	UHGV-0392967_6	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0392967_6	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0392967_6	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0392967_6	PF17288,PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
COG	UHGV-0392967_7	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-0392967_8	phrog_3458	70.9	1.5e-20	N/A	unknown function
PHROG	UHGV-0392967_10	phrog_533	301.9	0	portal protein	head and packaging
UniRef90	UHGV-0392967_10	UniRef90_A0A1C6CDM8	526.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0392967_10	33035.JPJF01000106_gene3135	477.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0392967_10	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_12	phrog_581	267.5	0	minor head protein	head and packaging
UniRef90	UHGV-0392967_12	UniRef90_A0A1C6CDG2	604.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0392967_12	33035.JPJF01000106_gene3134	452.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0392967_12	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0392967_12	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0392967_12	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_16	phrog_3754	119.0	3.1e-35	N/A	unknown function
eggNOG-mapper	UHGV-0392967_16	476272.RUMHYD_01764	205.0	0	N/A	N/A
PHROG	UHGV-0392967_17	phrog_1238	61.8	1.1e-17	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0392967_17	411902.CLOBOL_05680	172.0	0	UMP catabolic process	N/A
COG	UHGV-0392967_17	COG0647	N/A	N/A	Ribonucleotide monophosphatase NagD, HAD superfamily	N/A
structural_annotation	UHGV-0392967_17	PF08645,TIGR01689,COG0241	N/A	N/A	N/A	N/A
UniRef90	UHGV-0392967_18	UniRef90_A0A395X7A4	137.0	3.59e-40	CTP synthase	N/A
eggNOG-mapper	UHGV-0392967_18	476272.RUMHYD_01766	154.0	0	N/A	N/A
UniRef90	UHGV-0392967_19	UniRef90_A0A843HPX3	69.7	0.0000000000000511	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0392967_19	1235790.C805_00057	55.5	0.00000000363	N/A	N/A
PHROG	UHGV-0392967_22	phrog_21718	240.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0392967_22	476272.RUMHYD_01768	227.0	0	N/A	N/A
PHROG	UHGV-0392967_23	phrog_22984	125.8	1.2e-37	N/A	unknown function
PHROG	UHGV-0392967_24	phrog_16490	248.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0392967_24	476272.RUMHYD_01770	261.0	0	N/A	N/A
PHROG	UHGV-0392967_25	phrog_20016	214.1	0	N/A	unknown function
UniRef90	UHGV-0392967_25	UniRef90_A0A345BPX4	109.0	3.99e-28	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0392967_25	397290.C810_05214	103.0	2.42e-26	N/A	N/A
structural_annotation	UHGV-0392967_25	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_26	phrog_28802	331.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0392967_26	476272.RUMHYD_01772	227.0	0	N/A	N/A
PHROG	UHGV-0392967_27	phrog_194	71.9	1.1e-20	head scaffolding protein	head and packaging
UniRef90	UHGV-0392967_27	UniRef90_UPI001D14C9C8	225.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0392967_27	476272.RUMHYD_01775	212.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0392967_27	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0392967_28	phrog_544	177.7	0	major head protein	head and packaging
UniRef90	UHGV-0392967_28	UniRef90_A0A395X7A1	511.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0392967_28	476272.RUMHYD_01776	348.0	0	N/A	N/A
structural_annotation	UHGV-0392967_28	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_29	phrog_541	111.4	4e-33	head-tail adaptor	connector
eggNOG-mapper	UHGV-0392967_29	476272.RUMHYD_01778	112.0	3.42e-29	N/A	N/A
PHROG	UHGV-0392967_30	phrog_1233	97.5	1.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0392967_30	33035.JPJF01000106_gene3130	103.0	2.89e-27	N/A	N/A
PHROG	UHGV-0392967_31	phrog_18218	149.9	5.60519e-45	N/A	unknown function
UniRef90	UHGV-0392967_31	UniRef90_A0A8D9PGR5	156.0	0	Holin	N/A
eggNOG-mapper	UHGV-0392967_31	665950.HMPREF1025_02514	72.0	0.00000000000000571	N/A	N/A
structural_annotation	UHGV-0392967_31	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_32	phrog_8680	233.8	0	N/A	unknown function
UniRef90	UHGV-0392967_32	UniRef90_UPI0015711ED3	367.0	0	N/A	N/A
eggNOG-mapper	UHGV-0392967_32	411470.RUMGNA_02208	308.0	0	N/A	N/A
Pfam	UHGV-0392967_32	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0392967_32	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_33	phrog_3366	107.5	1e-31	N/A	unknown function
eggNOG-mapper	UHGV-0392967_33	476272.RUMHYD_01779	147.0	3.89561e-43	N/A	N/A
structural_annotation	UHGV-0392967_33	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_34	phrog_556	72.8	2.3e-21	minor head protein	head and packaging
UniRef90	UHGV-0392967_34	UniRef90_UPI0008B4CFF0	220.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0392967_34	476272.RUMHYD_01780	165.0	0	N/A	N/A
Pfam	UHGV-0392967_34	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0392967_34	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_35	phrog_3266	115.7	2.6e-34	tail completion	connector
eggNOG-mapper	UHGV-0392967_35	33035.JPJF01000106_gene3127	137.0	7.22e-39	N/A	N/A
structural_annotation	UHGV-0392967_35	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_36	phrog_3099	128.5	4.5e-38	N/A	unknown function
eggNOG-mapper	UHGV-0392967_36	1120746.CCNL01000014_gene2102	117.0	4.73e-31	N/A	N/A
structural_annotation	UHGV-0392967_36	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_37	phrog_706	140.5	9.99967e-42	N/A	unknown function
UniRef90	UHGV-0392967_37	UniRef90_A0A1I0K8S4	194.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0392967_37	411902.CLOBOL_00127	190.0	0	N/A	N/A
Pfam	UHGV-0392967_37	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0392967_37	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_38	phrog_11299	101.9	5.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-0392967_38	1449050.JNLE01000003_gene3883	93.6	3.1e-22	N/A	N/A
structural_annotation	UHGV-0392967_38	PF10666	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0392967_39	PF18152	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_40	phrog_1535	241.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0392967_40	UniRef90_A0A173R880	438.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0392967_40	476272.RUMHYD_01785	422.0	0	phage tail tape measure protein	N/A
COG	UHGV-0392967_40	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0392967_40	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_41	phrog_1535	115.6	1.96182e-44	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0392967_41	476272.RUMHYD_01785	177.0	0	phage tail tape measure protein	N/A
COG	UHGV-0392967_41	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_42	phrog_1194	56.1	6.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0392967_42	411902.CLOBOL_00125	143.0	2.06972e-42	N/A	N/A
structural_annotation	UHGV-0392967_42	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_43	phrog_32744	176.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0392967_43	411902.CLOBOL_00124	451.0	0	N/A	N/A
structural_annotation	UHGV-0392967_43	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0392967_44	phrog_18725	58.2	1.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0392967_44	411902.CLOBOL_00123	144.0	3.24961e-42	N/A	N/A
eggNOG-mapper	UHGV-0392967_45	610130.Closa_0858	67.0	0.0000000000105	N/A	N/A
COG	UHGV-0392967_46	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
eggNOG-mapper	UHGV-0392967_47	1298920.KI911353_gene541	59.7	0.0000000926	ATPase involved in DNA repair	N/A
COG	UHGV-0392967_47	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-0392967_47	PF07675,NF038128	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0392967	Yes	26,840	47	61	1
UHGV-0074588	No	13,463	48	30	1
UHGV-1758064	No	13,463	48	30	1
UHGV-1983552	No	13,436	47	30	1
UHGV-1654598	No	10,192	46	23	1