vOTU vOTU-024402

vOTU: vOTU-024402

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-024402
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00934 → vGENUS-02096 → vOTU-024402
Host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Intestinibacter → Intestinibacter bartlettii
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2166235
Biosample ID	SAMEA3449381
Genome length (bp)	25,205 bps
CheckV completeness	61.85% (Medium-quality)
CDS count	24
CDS density	93.34%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Intestinibacter → Intestinibacter bartlettii	Total connections	75	Host agreement	84
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	10	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 61.85)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2166235_2	phrog_5110	120.8	4.2e-36	terminase small subunit	head and packaging
UniRef90	UHGV-2166235_2	UniRef90_UPI001E64C17F	136.0	1.98e-39	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-2166235_2	349161.Dred_2608	139.0	2.94006e-41	N/A	N/A
Pfam	UHGV-2166235_2	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-2166235_2	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2166235_3	phrog_314	59.5	1.2e-17	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2166235_3	UniRef90_UPI001ABAEA39	144.0	2.73e-38	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-2166235_3	1399942.U3PCR9_9CAUD	133.0	2.39e-35	NUMOD3 motif (2 copies)	N/A
Pfam	UHGV-2166235_3	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-2166235_3	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
NCBIFam	UHGV-2166235_3	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
structural_annotation	UHGV-2166235_3	PF19835,PF07460,PF20987,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-2166235_4	phrog_9	326.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-2166235_4	UniRef90_UPI0011061D03	992.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-2166235_4	1211817.CCAT010000053_gene2129	642.0	0	Phage Terminase	N/A
Pfam	UHGV-2166235_4	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2166235_4	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2166235_4	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2166235_4	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2166235_5	phrog_12	98.6	4.7e-29	portal protein	head and packaging
UniRef90	UHGV-2166235_5	UniRef90_UPI00148519DF	745.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2166235_5	349161.Dred_2606	249.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-2166235_5	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-2166235_5	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-2166235_5	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2166235_5	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-2166235_6	K01358	151.9	4.2039e-45	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2166235_6	phrog_94	230.0	0	head maturation protease	head and packaging
UniRef90	UHGV-2166235_6	UniRef90_UPI00110724D9	423.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-2166235_6	1232452.BAIB02000007_gene1626	233.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2166235_6	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2166235_6	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2166235_6	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2166235_7	phrog_10	91.3	1e-26	major head protein	head and packaging
UniRef90	UHGV-2166235_7	UniRef90_UPI001107332E	791.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-2166235_7	349161.Dred_2604	312.0	0	Phage capsid family	N/A
Pfam	UHGV-2166235_7	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2166235_7	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2166235_7	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2166235_7	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2166235_8	phrog_749	59.1	6.4e-17	N/A	unknown function
UniRef90	UHGV-2166235_8	UniRef90_A0A1I3QJG6	120.0	1.17e-33	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-2166235_8	1121866.AUGK01000006_gene881	65.1	0.00000000000241	N/A	N/A
PHROG	UHGV-2166235_9	phrog_5635	60.5	3.1e-17	head-tail adaptor	connector
UniRef90	UHGV-2166235_9	UniRef90_UPI0011070497	206.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-2166235_9	1220589.CD32_01710	62.8	0.000000000049	N/A	N/A
NCBIFam	UHGV-2166235_9	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-2166235_9	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2166235_10	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-2166235_11	phrog_5509	112.0	3.1e-33	neck protein	connector
eggNOG-mapper	UHGV-2166235_11	936140.AEOT01000014_gene1361	67.4	0.00000000000162	N/A	N/A
structural_annotation	UHGV-2166235_11	TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-2166235_12	UniRef90_A0A316S919	226.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2166235_12	1384484.AEQU_1175	175.0	0	N/A	N/A
structural_annotation	UHGV-2166235_12	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2166235_13	1121866.AUGK01000006_gene886	64.3	0.0000000000125	N/A	N/A
PHROG	UHGV-2166235_14	phrog_1272	173.0	0	tail length tape measure protein	tail
UniRef90	UHGV-2166235_14	UniRef90_UPI001D11BE81	578.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-2166235_14	397290.C810_00429	176.0	1.54143e-44	Phage-related minor tail protein	N/A
Pfam	UHGV-2166235_14	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-2166235_14	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-2166235_14	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-2166235_15	phrog_58	204.4	0	tail length tape measure protein	tail
UniRef90	UHGV-2166235_15	UniRef90_UPI0011074901	563.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-2166235_15	411468.CLOSCI_00194	122.0	1.49e-26	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-2166235_15	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-2166235_16	phrog_33	67.2	3.9e-19	distal tail protein Dit	tail
UniRef90	UHGV-2166235_16	UniRef90_A0A1C5VG03	213.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-2166235_16	573061.Clocel_3532	152.0	3.82554e-43	tail component	N/A
COG	UHGV-2166235_16	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2166235_16	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-2166235_17	K11062	58.7	2.8e-17	entD; probable enterotoxin D	N/A
PHROG	UHGV-2166235_17	phrog_7043	382.5	0	tail protein	tail
UniRef90	UHGV-2166235_17	UniRef90_UPI0011CA3AC4	1820.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-2166235_17	1292035.H476_1004	464.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-2166235_17	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-2166235_17	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
NCBIFam	UHGV-2166235_17	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2166235_17	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2166235_17	PF14594,PF08239,PF19081,PF13229,TIGR01665,NF040678,COG4926,COG4991,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-2166235_18	phrog_215	51.3	0.0000000000000013	structural protein with Ig domain	head and packaging
eggNOG-mapper	UHGV-2166235_18	397288.C806_04531	61.6	0.000000731	Bacterial Ig-like domain 2	N/A
Pfam	UHGV-2166235_18	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-2166235_18	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-2166235_18	COG5492	N/A	N/A	N/A	N/A
KOfam	UHGV-2166235_19	K16568	93.6	2.1e-27	exoZ; exopolysaccharide production protein ExoZ	N/A
PHROG	UHGV-2166235_19	phrog_3333	113.0	2.2e-33	O-acetyltransferase	other
UniRef90	UHGV-2166235_19	UniRef90_A0A1I6PFV0	136.0	2.77e-33	Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains	N/A
eggNOG-mapper	UHGV-2166235_19	1405.DJ92_2349	136.0	4.65e-34	Acyltransferase family	N/A
Pfam	UHGV-2166235_19	PF01757	N/A	N/A	Acyltransferase family	Acyl_transf_3
COG	UHGV-2166235_19	COG1835	N/A	N/A	Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains	N/A
structural_annotation	UHGV-2166235_19	PF01757,MF_01949,NF000033,COG1835	N/A	N/A	N/A	N/A
PHROG	UHGV-2166235_21	phrog_199	99.3	3.6e-29	holin	lysis
UniRef90	UHGV-2166235_21	UniRef90_A0A1C5YH69	183.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-2166235_21	1280689.AUJC01000003_gene982	173.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-2166235_21	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2166235_21	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2166235_21	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2166235_21	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-2166235_22	K01448	123.6	1.7e-36	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2166235_22	phrog_435	113.8	1.8e-33	endolysin	lysis
UniRef90	UHGV-2166235_22	UniRef90_UPI001106ED5F	474.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2166235_22	445973.CLOBAR_01731	430.0	0	Ami_3	N/A
Pfam	UHGV-2166235_22	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-2166235_22	PF19087	N/A	N/A	N/A	DUF5776
COG	UHGV-2166235_22	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2166235_22	PF01520,PF19087,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-2166235_23	phrog_9996	65.8	7.7e-19	N/A	unknown function
UniRef90	UHGV-2166235_23	UniRef90_UPI0011071500	286.0	0	replication-relaxation family protein	N/A
Pfam	UHGV-2166235_23	PF13814	N/A	N/A	Replication-relaxation	Replic_Relax
KOfam	UHGV-2166235_24	K03466	107.1	1.4e-31	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-2166235_24	phrog_1358	138.5	2.59997e-41	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2166235_24	UniRef90_A0A267MQD1	115.0	3.69e-25	FtsK domain-containing protein	N/A
eggNOG-mapper	UHGV-2166235_24	1463900.JOIX01000030_gene4772	95.5	1.17e-18	N/A	N/A
PADLOC	UHGV-2166235_24	SspH_00004	52.3	0.0000000000000031	SspH	SSP
Pfam	UHGV-2166235_24	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-2166235_24	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2166235	Yes	25,205	29	62	1
UHGV-0393036	No	17,087	30	42	1
UHGV-1636458	No	14,310	29	32	1