vOTU vOTU-024419

vOTU: vOTU-024419

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-024419
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-03616 → vOTU-024419
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0067647
Biosample ID	N/A
Genome length (bp)	22,303 bps
CheckV completeness	60.31% (Medium-quality)
CDS count	30
CDS density	93.28%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	37	Host agreement	97.3
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	17	Host agreement	88.24

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 60.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0067647_1	phrog_338	53.4	0.0000000000000055	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0067647_1	UniRef90_UPI0015F33F36	186.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0067647_1	748224.HMPREF9436_01465	182.0	0	N/A	N/A
PHROG	UHGV-0067647_2	phrog_9	175.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0067647_2	UniRef90_UPI001F1A3C47	641.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0067647_2	748224.HMPREF9436_01467	748.0	0	phage terminase, large subunit	N/A
COG	UHGV-0067647_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0067647_2	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_3	phrog_104	204.7	0	portal protein	head and packaging
UniRef90	UHGV-0067647_3	UniRef90_A0A316PMS0	737.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0067647_3	748224.HMPREF9436_01468	727.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0067647_3	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_4	phrog_193	128.3	7.5e-38	head maturation protease	head and packaging
UniRef90	UHGV-0067647_4	UniRef90_A0A6N8H118	463.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0067647_4	748224.HMPREF9436_01469	312.0	0	N/A	N/A
COG	UHGV-0067647_4	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
PHROG	UHGV-0067647_5	phrog_194	63.7	1.8e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0067647_5	UniRef90_UPI00195B7610	160.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0067647_5	663278.Ethha_0497	166.0	0	N/A	N/A
Pfam	UHGV-0067647_5	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0067647_5	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_6	phrog_10	137.9	9.3e-41	major head protein	head and packaging
UniRef90	UHGV-0067647_6	UniRef90_A0A1Y4TJU9	484.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0067647_6	748224.HMPREF9436_00690	430.0	0	Phage capsid family	N/A
Pfam	UHGV-0067647_6	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0067647_6	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0067647_6	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0067647_6	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_7	phrog_137	59.0	6.9e-17	head-tail adaptor Ad1	connector
UniRef90	UHGV-0067647_7	UniRef90_E2ZGA8	154.0	0	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-0067647_7	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_8	phrog_501	83.6	2e-24	head closure Hc1	connector
eggNOG-mapper	UHGV-0067647_8	748224.HMPREF9436_00693	151.0	0	N/A	N/A
structural_annotation	UHGV-0067647_8	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_9	phrog_387	95.0	4.5e-28	neck protein	connector
UniRef90	UHGV-0067647_9	UniRef90_A0A380KNT4	92.8	3.73e-23	N/A	N/A
eggNOG-mapper	UHGV-0067647_9	908337.HMPREF9257_0534	91.3	2.48e-23	N/A	N/A
PHROG	UHGV-0067647_10	phrog_123	61.1	2.1e-17	tail terminator	connector
UniRef90	UHGV-0067647_10	UniRef90_F3MWA9	130.0	4.13e-37	N/A	N/A
eggNOG-mapper	UHGV-0067647_10	157924.Q7Y4H9_9CAUD	119.0	1.79e-33	N/A	N/A
structural_annotation	UHGV-0067647_10	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_11	phrog_117	179.9	0	major tail protein	tail
UniRef90	UHGV-0067647_11	UniRef90_A0A316PMT1	285.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0067647_11	1280698.AUJS01000007_gene1044	257.0	0	domain, Protein	N/A
COG	UHGV-0067647_11	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067647_11	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_12	phrog_1526	76.2	3.9e-22	N/A	unknown function
UniRef90	UHGV-0067647_12	UniRef90_G2SN49	68.6	0.000000000000245	N/A	N/A
eggNOG-mapper	UHGV-0067647_12	936375.HMPREF1152_0686	82.4	1.65e-19	N/A	N/A
PHROG	UHGV-0067647_13	phrog_1633	145.6	1.49939e-43	N/A	unknown function
UniRef90	UHGV-0067647_13	UniRef90_UPI001939D555	123.0	7.54e-34	N/A	N/A
eggNOG-mapper	UHGV-0067647_13	768726.HMPREF9178_1055	119.0	3.22e-33	N/A	N/A
Pfam	UHGV-0067647_13	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0067647_13	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_14	phrog_6900	219.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0067647_14	UniRef90_A0A0R1K502	199.0	0	Phage tape measure protein	N/A
eggNOG-mapper	UHGV-0067647_14	1280698.AUJS01000007_gene1047	226.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0067647_14	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067647_14	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_15	phrog_59	109.7	1.8e-32	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0067647_15	UniRef90_A0A0R1K4I1	258.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0067647_15	1423775.BAMN01000011_gene594	258.0	0	HNH endonuclease domain protein	N/A
PADLOC	UHGV-0067647_15	HEase_00016	59.1	9.1e-17	homing endonuclease	RM
Pfam	UHGV-0067647_15	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0067647_15	PF13392	N/A	N/A	HNH endonuclease	HNH_3
PHROG	UHGV-0067647_16	phrog_58	160.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0067647_16	UniRef90_A0A316Q0J4	256.0	0	PblA	N/A
eggNOG-mapper	UHGV-0067647_16	1280698.AUJS01000007_gene1047	205.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0067647_16	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067647_16	NF003615,COG3006	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_17	phrog_33	61.8	1.6e-17	distal tail protein Dit	tail
UniRef90	UHGV-0067647_17	UniRef90_A0A3A6ECR2	532.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0067647_17	665956.HMPREF1032_02941	276.0	0	Phage tail protein	N/A
structural_annotation	UHGV-0067647_17	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_18	phrog_538	180.6	0	minor tail protein	tail
UniRef90	UHGV-0067647_18	UniRef90_UPI000C7C9115	553.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0067647_18	665956.HMPREF1032_02940	384.0	0	N/A	N/A
Pfam	UHGV-0067647_18	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0067647_18	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_19	phrog_9534	176.8	0	head protein	head and packaging
UniRef90	UHGV-0067647_19	UniRef90_A0A1Y4GY33	95.1	1.31e-18	Collar domain-containing protein	N/A
eggNOG-mapper	UHGV-0067647_19	665956.HMPREF1032_02939	222.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0067647_19	PF21567	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067647_20	PF21253,NF038128	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0067647_21	665956.HMPREF1032_03264	688.0	0	N/A	N/A
structural_annotation	UHGV-0067647_21	PF02010,MF_04116,NF032891,COG3401	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_22	phrog_27355	187.7	0	N/A	unknown function
UniRef90	UHGV-0067647_22	UniRef90_A0A6F9XJJ8	107.0	3.76e-23	Peptidylprolyl isomerase	N/A
eggNOG-mapper	UHGV-0067647_22	665956.HMPREF1032_03265	584.0	0	N/A	N/A
structural_annotation	UHGV-0067647_22	PF06199,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_23	phrog_1887	54.2	6.6e-24	tail protein	tail
UniRef90	UHGV-0067647_23	UniRef90_G9RS94	1027.0	0	N/A	N/A
eggNOG-mapper	UHGV-0067647_23	665956.HMPREF1032_03266	1027.0	0	N/A	N/A
Pfam	UHGV-0067647_23	PF16467	N/A	N/A	N/A	DUF5048
structural_annotation	UHGV-0067647_23	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0067647_24	742733.HMPREF9469_00966	77.8	0.0000000000000058	N/A	N/A
eggNOG-mapper	UHGV-0067647_25	665956.HMPREF1032_03268	199.0	0	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
structural_annotation	UHGV-0067647_26	PF21253,NF038128	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067647_27	PF11514	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_28	phrog_11037	46.5	0.0000000000005	N/A	unknown function
UniRef90	UHGV-0067647_28	UniRef90_A0A372V7Z4	271.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0067647_28	665956.HMPREF1032_03271	658.0	0	N/A	N/A
structural_annotation	UHGV-0067647_28	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-0067647_29	phrog_1129	68.6	6.6e-20	holin	lysis
UniRef90	UHGV-0067647_29	UniRef90_A0A0D8J2M2	157.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0067647_29	665956.HMPREF1032_03272	172.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0067647_29	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0067647_29	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0067647_30	665956.HMPREF1032_03776	105.0	1.66e-26	Cell envelope-like function transcriptional attenuator common domain protein	N/A
COG	UHGV-0067647_30	COG1316	N/A	N/A	Anionic cell wall polymer biosynthesis enzyme TagV/TagU, LytR-Cps2A-Psr (LCP) family (peptidoglycan teichoic acid transferase)	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0067647	Yes	22,303	50	60	1
UHGV-1383057	No	22,303	50	60	1
UHGV-1816892	No	15,865	54	43	1
UHGV-0451640	No	13,249	55	36	1