vOTU vOTU-024449

vOTU: vOTU-024449

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-024449
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00030 → vOTU-024449
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0773920
Biosample ID	SAMEA3488671
Genome length (bp)	30,345 bps
CheckV completeness	85.48% (Medium-quality)
CDS count	58
CDS density	90.38%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena	Total connections	172	Host agreement	84.3
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A	Total connections	13	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 85.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0773920_3	phrog_2316	204.1	0	N/A	unknown function
UniRef90	UHGV-0773920_3	UniRef90_UPI000400DA88	395.0	0	N/A	N/A
eggNOG-mapper	UHGV-0773920_3	1280698.AUJS01000007_gene1022	395.0	0	N/A	N/A
Pfam	UHGV-0773920_3	PF16475	N/A	N/A	N/A	DUF5052
structural_annotation	UHGV-0773920_3	PF16475	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_8	phrog_9822	166.0	0	N/A	unknown function
PHROG	UHGV-0773920_10	phrog_8684	92.7	1.1e-27	N/A	unknown function
UniRef90	UHGV-0773920_10	UniRef90_UPI001C00C8FC	315.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0773920_10	457412.RSAG_01162	171.0	0	YopX protein	N/A
Pfam	UHGV-0773920_10	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0773920_10	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0773920_10	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_11	phrog_15077	93.1	5.4e-27	N/A	unknown function
UniRef90	UHGV-0773920_11	UniRef90_A0A3A6HZA9	239.0	0	N/A	N/A
eggNOG-mapper	UHGV-0773920_11	1280698.AUJS01000007_gene1019	703.0	0	N/A	N/A
PHROG	UHGV-0773920_12	phrog_8470	207.8	0	N/A	unknown function
UniRef90	UHGV-0773920_12	UniRef90_UPI001C01E393	870.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0773920_12	1280698.AUJS01000007_gene1018	1413.0	0	N/A	N/A
Pfam	UHGV-0773920_12	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0773920_12	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_13	phrog_4433	57.7	3.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-0773920_13	1280698.AUJS01000007_gene1017	378.0	0	N/A	N/A
structural_annotation	UHGV-0773920_13	PF12120,NF000318	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0773920_14	1280698.AUJS01000007_gene1016	308.0	0	N/A	N/A
KOfam	UHGV-0773920_15	K03469	50.8	0.000000000000031	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0773920_15	phrog_531	54.9	0.0000000000000017	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0773920_15	UniRef90_A0A6N9JSQ7	271.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0773920_15	1280698.AUJS01000007_gene1015	279.0	0	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-0773920_15	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0773920_15	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0773920_15	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_17	phrog_3584	152.1	2.8026e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0773920_17	1280698.AUJS01000007_gene1013	514.0	0	N/A	N/A
structural_annotation	UHGV-0773920_17	PF01446	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_23	phrog_32192	101.0	1.99993e-41	N/A	unknown function
eggNOG-mapper	UHGV-0773920_23	1280698.AUJS01000007_gene1007	198.0	0	N/A	N/A
PHROG	UHGV-0773920_30	phrog_8	57.5	3.4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0773920_30	UniRef90_A0A173VG88	142.0	3.64338e-43	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-0773920_30	552396.HMPREF0863_02446	72.4	3.57e-16	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0773920_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0773920_30	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0773920_31	K22300	57.6	2.7e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0773920_31	phrog_8	59.1	1.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0773920_31	UniRef90_A0A173VG78	248.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0773920_31	411462.DORLON_00819	139.0	5.77994e-41	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0773920_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0773920_31	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0773920_31	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_32	phrog_20886	136.0	3.09995e-41	N/A	unknown function
UniRef90	UHGV-0773920_32	UniRef90_UPI000C757FC8	88.6	1.11e-20	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0773920_32	411462.DORLON_00820	237.0	0	N/A	N/A
structural_annotation	UHGV-0773920_32	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0773920_33	K07504	433.3	0	K07504; predicted type IV restriction endonuclease	N/A
PHROG	UHGV-0773920_33	phrog_4225	493.3	0	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0773920_33	UniRef90_A0A173VG58	683.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0773920_33	411462.DORLON_00821	679.0	0	Type I restriction enzyme R protein N terminus (HSDR_N)	N/A
Pfam	UHGV-0773920_33	PF04313	N/A	N/A	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
COG	UHGV-0773920_33	COG4748	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0773920_33	PF13588,TIGR04256,COG4748	N/A	N/A	N/A	N/A
KOfam	UHGV-0773920_34	K14623	353.3	0	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-0773920_34	phrog_8036	363.7	0	N/A	unknown function
UniRef90	UHGV-0773920_34	UniRef90_A0A3P3QSS9	433.0	0	DNA damage-inducible protein D	N/A
eggNOG-mapper	UHGV-0773920_34	665950.HMPREF1025_02565	384.0	0	N/A	N/A
AcrCatalog	UHGV-0773920_34	cluster_17589	139.0	7.55006e-41	NA	N/A
PADLOC	UHGV-0773920_34	Specificity_I_00032	330.6	0	Type I specificity subunit	RM
Pfam	UHGV-0773920_34	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
NCBIFam	UHGV-0773920_34	NF008573.0	N/A	N/A	DNA damage-inducible protein D	N/A
COG	UHGV-0773920_34	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
KOfam	UHGV-0773920_35	K06400	261.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0773920_35	phrog_95	290.0	0	integrase	integration and excision
UniRef90	UHGV-0773920_35	UniRef90_UPI00156F85ED	907.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0773920_35	411461.DORFOR_00037	694.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0773920_35	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0773920_35	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0773920_35	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0773920_35	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0773920_36	K01447	95.3	9.9e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0773920_36	phrog_1493	190.6	0	endolysin	lysis
UniRef90	UHGV-0773920_36	UniRef90_UPI00041018D3	493.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0773920_36	1280698.AUJS01000007_gene1059	493.0	0	Ami_2	N/A
Pfam	UHGV-0773920_36	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0773920_36	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0773920_36	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0773920_36	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_37	phrog_1129	76.5	2.2e-22	holin	lysis
UniRef90	UHGV-0773920_37	UniRef90_UPI001F15FE24	148.0	7.00649e-45	phage holin family protein	N/A
eggNOG-mapper	UHGV-0773920_37	411461.DORFOR_00721	169.0	0	N/A	N/A
Pfam	UHGV-0773920_37	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0773920_37	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_38	phrog_1009	43.9	0.0000000000038	N/A	unknown function
UniRef90	UHGV-0773920_38	UniRef90_A0A173RD60	183.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0773920_38	742765.HMPREF9457_03364	173.0	0	N/A	N/A
eggNOG-mapper	UHGV-0773920_39	411461.DORFOR_00723	87.8	1.02e-22	N/A	N/A
eggNOG-mapper	UHGV-0773920_40	1280698.AUJS01000007_gene1056	176.0	0	N/A	N/A
structural_annotation	UHGV-0773920_40	PF07703,NF038114,COG5501	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_41	phrog_32322	80.1	2e-23	N/A	unknown function
UniRef90	UHGV-0773920_41	UniRef90_B0G3A4	219.0	0	Ig-like_bact domain-containing protein	N/A
eggNOG-mapper	UHGV-0773920_41	1280698.AUJS01000007_gene1055	224.0	0	N/A	N/A
Pfam	UHGV-0773920_41	PF13754	N/A	N/A	N/A	Big_3_4
structural_annotation	UHGV-0773920_41	PF13754	N/A	N/A	N/A	N/A
KOfam	UHGV-0773920_42	K13276	83.0	2e-24	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-0773920_42	phrog_11157	239.9	0	N/A	unknown function
UniRef90	UHGV-0773920_42	UniRef90_B0G3A5	507.0	0	Big_13 domain-containing protein	N/A
eggNOG-mapper	UHGV-0773920_42	742765.HMPREF9457_03368	510.0	0	N/A	N/A
Pfam	UHGV-0773920_42	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-0773920_42	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
NCBIFam	UHGV-0773920_42	NF033510.3	N/A	N/A	Ca2+-stabilized repeat-containing adhesin	N/A
COG	UHGV-0773920_42	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0773920_42	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0773920_43	1280698.AUJS01000007_gene1053	122.0	3.18e-36	N/A	N/A
PHROG	UHGV-0773920_44	phrog_12931	96.7	1.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0773920_44	1280698.AUJS01000007_gene1052	272.0	0	N/A	N/A
eggNOG-mapper	UHGV-0773920_45	1280698.AUJS01000007_gene1050	201.0	0	N/A	N/A
PHROG	UHGV-0773920_46	phrog_25635	279.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0773920_46	1280698.AUJS01000007_gene1050	308.0	0	N/A	N/A
structural_annotation	UHGV-0773920_46	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_47	phrog_538	203.0	0	minor tail protein	tail
UniRef90	UHGV-0773920_47	UniRef90_UPI001F3E20C1	503.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0773920_47	1280698.AUJS01000007_gene1049	664.0	0	N/A	N/A
Pfam	UHGV-0773920_47	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0773920_47	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_48	phrog_6900	257.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0773920_48	UniRef90_A0A174L0T5	555.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0773920_48	1280698.AUJS01000007_gene1047	871.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0773920_48	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0773920_48	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_49	phrog_1633	159.7	0	N/A	unknown function
UniRef90	UHGV-0773920_49	UniRef90_UPI00157064A0	143.0	6.3703e-42	N/A	N/A
eggNOG-mapper	UHGV-0773920_49	1280698.AUJS01000007_gene1046	244.0	0	N/A	N/A
Pfam	UHGV-0773920_49	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0773920_49	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_50	phrog_1526	106.7	1.1e-31	N/A	unknown function
UniRef90	UHGV-0773920_50	UniRef90_A0A1Q8EF45	72.8	0.00000000000000846	N/A	N/A
eggNOG-mapper	UHGV-0773920_50	665950.HMPREF1025_02524	83.2	1.02e-19	N/A	N/A
PHROG	UHGV-0773920_51	phrog_117	174.6	0	major tail protein	tail
UniRef90	UHGV-0773920_51	UniRef90_UPI001F18A06D	279.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0773920_51	1280698.AUJS01000007_gene1044	361.0	0	domain, Protein	N/A
COG	UHGV-0773920_51	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0773920_51	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_52	phrog_123	56.2	7e-16	tail terminator	connector
eggNOG-mapper	UHGV-0773920_52	1280698.AUJS01000007_gene1043	205.0	0	N/A	N/A
structural_annotation	UHGV-0773920_52	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_53	phrog_387	47.3	0.00000000000018	neck protein	connector
eggNOG-mapper	UHGV-0773920_53	908337.HMPREF9257_0534	50.8	0.000000188	N/A	N/A
PHROG	UHGV-0773920_54	phrog_501	85.5	5.3e-25	head closure Hc1	connector
UniRef90	UHGV-0773920_54	UniRef90_Q7Y4I1	126.0	1.36e-35	Gp43	N/A
eggNOG-mapper	UHGV-0773920_54	1280698.AUJS01000007_gene1041	202.0	0	N/A	N/A
structural_annotation	UHGV-0773920_54	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_55	phrog_137	46.9	0.0000000000004	head-tail adaptor Ad1	connector
UniRef90	UHGV-0773920_55	UniRef90_UPI000EB9D93E	244.0	0	phage Gp19/Gp15/Gp42 family protein	N/A
Pfam	UHGV-0773920_55	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0773920_55	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0773920_57	phrog_10	114.2	1.5e-33	major head protein	head and packaging
UniRef90	UHGV-0773920_57	UniRef90_A0A174L023	528.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0773920_57	205876.Q855V6_9CAUD	305.0	0	peptidase activity	N/A
Pfam	UHGV-0773920_57	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0773920_57	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0773920_57	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0773920	Yes	30,345	41	85	1
UHGV-1352152	No	25,328	41	71	1
UHGV-1690846	No	12,865	42	31	1