vOTU vOTU-024452

vOTU: vOTU-024452

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-024452
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00950 → vOTU-024452
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1347240
Biosample ID	N/A
Genome length (bp)	28,468 bps
CheckV completeness	73.46% (Medium-quality)
CDS count	53
CDS density	95.93%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170	Total connections	3	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 73.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1347240_1	phrog_1281	115.6	2.7e-34	N/A	unknown function
UniRef90	UHGV-1347240_1	UniRef90_UPI001379C4C4	231.0	0	N/A	N/A
eggNOG-mapper	UHGV-1347240_1	1227268.HMPREF1552_01576	206.0	0	Phage-associated protein	N/A
Pfam	UHGV-1347240_1	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-1347240_1	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1347240_1	PF13274,COG3600	N/A	N/A	N/A	N/A
UniRef90	UHGV-1347240_2	UniRef90_UPI001A9BE725	129.0	2.91e-36	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-1347240_2	861450.HMPREF0080_00315	108.0	5.57e-29	N/A	N/A
structural_annotation	UHGV-1347240_2	PF02452,NF010262,COG2337	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1347240_3	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1347240_4	K01447	96.2	5e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1347240_4	phrog_670	115.4	5e-34	endolysin	lysis
UniRef90	UHGV-1347240_4	UniRef90_A0A3D4VSU2	151.0	3.83956e-42	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1347240_4	1203606.HMPREF1526_00589	84.0	6.68e-17	Ami_2	N/A
Pfam	UHGV-1347240_4	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1347240_4	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1347240_4	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_5	phrog_6918	94.1	9.7e-28	holin	lysis
UniRef90	UHGV-1347240_5	UniRef90_G9YP36	104.0	7.18e-27	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-1347240_5	1297617.JPJD01000020_gene301	97.4	6.33e-25	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1347240_5	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1347240_5	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-1347240_8	K18454	44.5	0.0000000000022	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
PHROG	UHGV-1347240_8	phrog_30034	72.3	9.2e-21	N/A	unknown function
UniRef90	UHGV-1347240_8	UniRef90_A0A1C5VT90	146.0	7.90332e-43	Chitinase A1	N/A
eggNOG-mapper	UHGV-1347240_8	1235796.C815_00903	127.0	6.24e-35	N/A	N/A
Pfam	UHGV-1347240_8	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1347240_8	PF14600	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1347240_9	1519439.JPJG01000060_gene1895	142.0	4.38e-40	N/A	N/A
structural_annotation	UHGV-1347240_9	PF10618	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1347240_10	PF02973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1347240_11	742733.HMPREF9469_05008	50.8	0.00000239	N/A	N/A
PHROG	UHGV-1347240_12	phrog_13589	166.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1347240_12	428125.CLOLEP_01434	229.0	0	N/A	N/A
PHROG	UHGV-1347240_13	phrog_31538	52.6	0.0000000000000099	N/A	unknown function
eggNOG-mapper	UHGV-1347240_13	428125.CLOLEP_01433	53.9	0.0000000432	N/A	N/A
structural_annotation	UHGV-1347240_14	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_18	phrog_32308	61.6	1.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-1347240_18	1235797.C816_04180	80.9	0.0000000000000195	N/A	N/A
structural_annotation	UHGV-1347240_18	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_19	phrog_1194	92.3	4.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-1347240_19	1219626.HMPREF1639_07230	64.7	0.00000000000837	N/A	N/A
Pfam	UHGV-1347240_19	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1347240_19	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_20	phrog_1535	106.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1347240_20	UniRef90_A0A810PX76	231.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1347240_20	1235797.C816_04182	434.0	0	SLT domain	N/A
COG	UHGV-1347240_20	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1347240_20	PF05546,TIGR02559	N/A	N/A	N/A	N/A
KOfam	UHGV-1347240_21	K07339	53.0	0.0000000000000061	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
UniRef90	UHGV-1347240_21	UniRef90_UPI00095266FB	101.0	2.54e-27	type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-1347240_21	665956.HMPREF1032_00122	62.0	0.00000000000228	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-1347240_21	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
structural_annotation	UHGV-1347240_21	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-1347240_22	K18843	62.7	8.2e-18	hicB; antitoxin HicB	N/A
PHROG	UHGV-1347240_22	phrog_497	67.8	2.3e-19	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1347240_22	UniRef90_A0A3D0XP31	171.0	0	HicB family protein	N/A
eggNOG-mapper	UHGV-1347240_22	1122925.KB895394_gene1703	152.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-1347240_22	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-1347240_22	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-1347240_22	PF15919,COG1598	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_23	phrog_706	117.7	9.1e-35	N/A	unknown function
UniRef90	UHGV-1347240_23	UniRef90_UPI000682A80B	259.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1347240_23	693746.OBV_18170	243.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1347240_23	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1347240_23	PF06854	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1347240_24	1408437.JNJN01000010_gene1237	84.0	1.59e-18	N/A	N/A
structural_annotation	UHGV-1347240_24	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_25	phrog_3099	85.5	7.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1347240_25	693746.OBV_18150	255.0	0	N/A	N/A
structural_annotation	UHGV-1347240_25	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_26	phrog_3266	58.7	9.7e-17	tail completion	connector
eggNOG-mapper	UHGV-1347240_26	693746.OBV_18140	216.0	0	N/A	N/A
structural_annotation	UHGV-1347240_26	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_27	phrog_556	68.1	1.2e-19	minor head protein	head and packaging
UniRef90	UHGV-1347240_27	UniRef90_A0A4R1QRE8	111.0	2.26e-28	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1347240_27	33035.JPJF01000106_gene3128	77.8	4.79e-16	N/A	N/A
Pfam	UHGV-1347240_27	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1347240_27	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1347240_28	PF20536,MF_01370,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_29	phrog_541	66.1	5.1e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-1347240_29	693746.OBV_18110	101.0	2.59e-26	N/A	N/A
PHROG	UHGV-1347240_30	phrog_212	264.1	0	major head protein	head and packaging
UniRef90	UHGV-1347240_30	UniRef90_A0A354MR33	538.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1347240_30	935836.JAEL01000021_gene1494	345.0	0	N/A	N/A
structural_annotation	UHGV-1347240_30	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_31	phrog_194	88.1	1.4e-25	head scaffolding protein	head and packaging
UniRef90	UHGV-1347240_31	UniRef90_UPI00164D9F94	235.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1347240_31	693746.OBV_18080	171.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1347240_31	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1347240_31	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_32	phrog_581	235.5	0	minor head protein	head and packaging
UniRef90	UHGV-1347240_32	UniRef90_UPI0006814CA4	499.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1347240_32	693746.OBV_18050	521.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1347240_32	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1347240_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1347240_32	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_33	phrog_533	216.1	0	portal protein	head and packaging
UniRef90	UHGV-1347240_33	UniRef90_UPI000680A1DB	531.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1347240_33	693746.OBV_18040	394.0	0	N/A	N/A
Pfam	UHGV-1347240_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1347240_33	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_35	phrog_28563	45.4	0.0000000000015	N/A	unknown function
UniRef90	UHGV-1347240_35	UniRef90_A0A3F2ZWC3	55.8	0.00000000395	Phage terminase large subunit	N/A
NCBIFam	UHGV-1347240_35	TIGR01443.1	N/A	N/A	intein C-terminal splicing region	N/A
PHROG	UHGV-1347240_36	phrog_15471	140.3	8.80015e-42	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1347240_36	UniRef90_A0A2Z4QAG6	203.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1347240_36	1141106.CAIB01000133_gene1117	159.0	0	HNH endonuclease	N/A
Pfam	UHGV-1347240_36	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1347240_36	PF13392,PF10013,COG4068	N/A	N/A	N/A	N/A
KOfam	UHGV-1347240_37	K06909	121.7	8.5e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1347240_37	phrog_10250	141.9	3.39955e-42	N/A	unknown function
UniRef90	UHGV-1347240_37	UniRef90_A0A1C6J947	604.0	0	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	N/A
eggNOG-mapper	UHGV-1347240_37	1226322.HMPREF1545_00043	591.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1347240_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1347240_37	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1347240_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1347240_37	PF04466,PF20441,MF_04148,TIGR01547,TIGR01445,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1347240_38	UniRef90_A0A2Z4Q9Z4	155.0	0	Nascent polypeptide-associated complex domain protein	N/A
eggNOG-mapper	UHGV-1347240_38	1226322.HMPREF1545_00042	149.0	1.26117e-44	N/A	N/A
structural_annotation	UHGV-1347240_38	PF13542	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_39	phrog_36	78.7	9e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-1347240_39	UniRef90_A0A858BU04	89.0	5.97e-20	N/A	N/A
eggNOG-mapper	UHGV-1347240_39	1123075.AUDP01000020_gene1515	57.8	0.0000000127	sigma factor activity	N/A
COG	UHGV-1347240_39	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1347240_39	PF07374,MF_00245,TIGR02980,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1347240_41	K01520	163.7	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1347240_41	phrog_135	134.3	6.7e-40	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1347240_41	UniRef90_A0A3D3Y5Q7	257.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1347240_41	1282887.AUJG01000016_gene1113	140.0	8.70999e-40	N/A	N/A
Pfam	UHGV-1347240_41	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1347240_41	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1347240_41	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1347240_41	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
UniRef90	UHGV-1347240_45	UniRef90_A0A374AB28	184.0	0	Thymidylate synthase ThyX	N/A
eggNOG-mapper	UHGV-1347240_45	935948.KE386495_gene2250	92.8	2.17e-21	N/A	N/A
Pfam	UHGV-1347240_45	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-1347240_45	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_47	phrog_599	48.2	0.00000000000024	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1347240_47	UniRef90_A0A315Y4I9	106.0	3.17e-28	Lar family restriction alleviation protein	N/A
Pfam	UHGV-1347240_47	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1347240_47	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1347240_47	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1347240_47	TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_49	phrog_38832	60.7	3.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-1347240_49	1232443.BAIA02000078_gene48	116.0	7.79e-32	N/A	N/A
structural_annotation	UHGV-1347240_49	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-1347240_50	phrog_954	186.8	0	DNA methyltransferase	other
UniRef90	UHGV-1347240_50	UniRef90_A0A810Q0N4	266.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1347240_50	1280698.AUJS01000007_gene1028	256.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-1347240_50	MTase_II_00074	178.2	0	Type II methyltransferase	RM
Pfam	UHGV-1347240_50	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-1347240_50	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-1347240_50	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1347240	Yes	28,468	53	73	1
UHGV-0780120	No	26,432	53	68	1
UHGV-0828841	No	23,873	52	62	1