vOTU vOTU-024788

vOTU: vOTU-024788

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-024788
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-01244 → vOTU-024788
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1379342
Biosample ID	SAMEA3449172
Genome length (bp)	22,034 bps
CheckV completeness	59.83% (Medium-quality)
CDS count	21
CDS density	87.29%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255	Total connections	31	Host agreement	83.87

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 59.83)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1379342_1	UniRef90_UPI001D825F25	165.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1379342_1	1211817.CCAT010000053_gene2132	177.0	0	Phage capsid family	N/A
COG	UHGV-1379342_1	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
PHROG	UHGV-1379342_2	phrog_749	59.5	5.7e-17	N/A	unknown function
UniRef90	UHGV-1379342_2	UniRef90_A0A1I3QJG6	107.0	2.41e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1379342_2	1211817.CCAT010000008_gene943	50.1	0.00000123	N/A	N/A
PHROG	UHGV-1379342_3	phrog_11176	201.4	0	head-tail adaptor	connector
UniRef90	UHGV-1379342_3	UniRef90_UPI00164ACD7E	301.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-1379342_3	1347392.CCEZ01000045_gene13	73.2	0.0000000000000531	N/A	N/A
Pfam	UHGV-1379342_3	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1379342_3	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1379342_3	PF05521,PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1379342_4	phrog_5	59.6	8.6e-17	tail completion or Neck1 protein	connector
UniRef90	UHGV-1379342_4	UniRef90_UPI00164C9F08	137.0	2.28e-39	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1379342_4	1476973.JMMB01000007_gene1766	69.3	0.00000000000021	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1379342_4	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1379342_4	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1379342_4	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1379342_5	phrog_78	42.9	0.0000000000089	tail terminator	connector
eggNOG-mapper	UHGV-1379342_5	1487921.DP68_11350	59.7	0.000000000463	N/A	N/A
structural_annotation	UHGV-1379342_5	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1379342_6	phrog_88	124.8	6.1e-37	major tail protein	tail
UniRef90	UHGV-1379342_6	UniRef90_B1V2P3	223.0	0	Phage major tail protein, Phi13 family	N/A
eggNOG-mapper	UHGV-1379342_6	1151292.QEW_0347	113.0	1.45e-28	Phage tail tube protein	N/A
NCBIFam	UHGV-1379342_6	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1379342_6	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1379342_7	phrog_37637	41.3	0.000000000031	N/A	unknown function
eggNOG-mapper	UHGV-1379342_7	1476973.JMMB01000007_gene1770	67.0	0.0000000000207	N/A	N/A
KOfam	UHGV-1379342_8	K20478	65.5	9.3e-20	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1379342_8	phrog_1533	433.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1379342_8	UniRef90_UPI00164B849B	726.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1379342_8	1151292.QEW_0351	407.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1379342_8	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1379342_8	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1379342_8	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1379342_8	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
UniRef90	UHGV-1379342_9	UniRef90_UPI000DD01D50	172.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1379342_9	1280689.AUJC01000011_gene1531	169.0	0	phage tail	N/A
Pfam	UHGV-1379342_9	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1379342_9	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1379342_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1379342_9	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1379342_10	phrog_1067	268.5	0	minor head protein	head and packaging
UniRef90	UHGV-1379342_10	UniRef90_UPI00164A835E	813.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1379342_10	1292035.H476_1004	383.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1379342_10	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1379342_10	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1379342_10	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1379342_10	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1379342_11	phrog_13015	121.7	5.9e-36	virion structural protein	head and packaging
UniRef90	UHGV-1379342_11	UniRef90_UPI001369E144	470.0	0	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-1379342_11	1280663.ATVR01000018_gene1258	73.6	0.00000000000832	GDSL-like Lipase/Acylhydrolase	N/A
Pfam	UHGV-1379342_11	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-1379342_11	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-1379342_11	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-1379342_11	PF10651,PF16255,COG3470	N/A	N/A	N/A	N/A
PHROG	UHGV-1379342_13	phrog_199	59.7	3.9e-17	holin	lysis
UniRef90	UHGV-1379342_13	UniRef90_A0A174GWW6	220.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-1379342_13	1499684.CCNP01000023_gene3170	135.0	1.62e-39	Bacteriophage holin family	N/A
Pfam	UHGV-1379342_13	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1379342_13	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1379342_13	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1379342_13	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1379342_14	K01446	93.0	3.2e-27	PGRP; peptidoglycan recognition protein	N/A
PHROG	UHGV-1379342_14	phrog_35436	154.6	0	amidase	lysis
UniRef90	UHGV-1379342_14	UniRef90_UPI0018A90822	370.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1379342_14	553973.CLOHYLEM_04450	237.0	0	Ami_2	N/A
Pfam	UHGV-1379342_14	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1379342_14	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1379342_14	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1379342_14	PF01510,PF01471,MF_04111,NF008758,TIGR02869,COG5632,COG3409	N/A	N/A	N/A	N/A
KOfam	UHGV-1379342_16	K13525	134.2	7.6e-40	VCP, CDC48; transitional endoplasmic reticulum ATPase	N/A
PHROG	UHGV-1379342_16	phrog_3757	300.0	0	N/A	unknown function
UniRef90	UHGV-1379342_16	UniRef90_A0A0C3I4X9	474.0	0	ATPase AAA	N/A
eggNOG-mapper	UHGV-1379342_16	398512.JQKC01000009_gene393	405.0	0	ATPase family associated with various cellular activities (AAA)	N/A
PADLOC	UHGV-1379342_16	IetA_00002	292.7	0	NA	ietAS
Pfam	UHGV-1379342_16	PF00004	N/A	N/A	ATPase family associated with various cellular activities (AAA)	AAA
COG	UHGV-1379342_16	COG0464	N/A	N/A	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	N/A
structural_annotation	UHGV-1379342_16	PF00004,MF_00553,TIGR01242,COG1222	N/A	N/A	N/A	N/A
KOfam	UHGV-1379342_17	K17734	124.4	9.9e-37	aprX; serine protease AprX [EC:3.4.21.-]	N/A
PHROG	UHGV-1379342_17	phrog_3964	399.3	0	N/A	unknown function
UniRef90	UHGV-1379342_17	UniRef90_A0A0C3M9D2	858.0	0	Peptidase_S8 domain-containing protein	N/A
eggNOG-mapper	UHGV-1379342_17	398512.JQKC01000009_gene394	614.0	0	Subtilase family	N/A
PADLOC	UHGV-1379342_17	IetS_00001	221.7	0	NA	ietAS
Pfam	UHGV-1379342_17	PF00082	N/A	N/A	Subtilase family	Peptidase_S8
COG	UHGV-1379342_17	COG1404	N/A	N/A	Serine protease, subtilisin family	N/A
structural_annotation	UHGV-1379342_17	PF00082,TIGR03921,COG1404	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1379342_18	1414720.CBYM010000001_gene718	77.4	2.57e-18	N/A	N/A
UniRef90	UHGV-1379342_19	UniRef90_UPI000AABEC73	113.0	1.28e-31	LLM class flavin-dependent oxidoreductase	N/A
eggNOG-mapper	UHGV-1379342_19	1499683.CCFF01000017_gene2117	113.0	2.46e-32	N/A	N/A
structural_annotation	UHGV-1379342_19	PF20075,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1379342_20	phrog_428	53.0	0.0000000000000081	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1379342_20	UniRef90_UPI000A58161B	375.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1379342_20	1382315.JPOI01000001_gene1329	55.8	0.000000662	Helix-turn-helix domain	N/A
Pfam	UHGV-1379342_20	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-1379342_20	PF13730,MF_01586,NF040939,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-1379342_21	UniRef90_A0A174B7J2	172.0	0	Pyridine nucleotide-disulfide oxidoreductase family protein	N/A
eggNOG-mapper	UHGV-1379342_21	545697.HMPREF0216_01658	166.0	0	division protein A	N/A
COG	UHGV-1379342_21	COG1206	N/A	N/A	Folate-dependent tRNA-U54 methylase TrmFO/GidA	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1379342	Yes	22,034	28	60	1
UHGV-2104193	No	12,021	28	33	1
UHGV-1653572	No	11,297	29	19	1