vOTU vOTU-024970

vOTU: vOTU-024970

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-024970
Number of genomes	3
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-02090 → vOTU-024970
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1404667
Biosample ID	SAMEA2338839
Genome length (bp)	24,980 bps
CheckV completeness	55.12% (Medium-quality)
CDS count	33
CDS density	91.21%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	6	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 55.12)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1404667_1	phrog_533	223.9	0	portal protein	head and packaging
UniRef90	UHGV-1404667_1	UniRef90_A0A173R9C0	709.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1404667_1	476272.RUMHYD_01758	719.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1404667_1	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1404667_2	phrog_1129	93.0	1.4e-27	holin	lysis
UniRef90	UHGV-1404667_2	UniRef90_UPI00051B7422	167.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1404667_2	1232453.BAIF02000013_gene3227	155.0	0	N/A	N/A
Pfam	UHGV-1404667_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1404667_2	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-1404667_3	phrog_774	60.5	3e-17	N/A	unknown function
eggNOG-mapper	UHGV-1404667_3	397290.C810_05225	137.0	4.10006e-41	N/A	N/A
PHROG	UHGV-1404667_4	phrog_581	267.0	0	minor head protein	head and packaging
UniRef90	UHGV-1404667_4	UniRef90_A0A373MXM0	551.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1404667_4	476272.RUMHYD_01761	553.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1404667_4	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1404667_4	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1404667_4	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1404667_6	phrog_3754	113.8	1.1e-33	N/A	unknown function
eggNOG-mapper	UHGV-1404667_6	476272.RUMHYD_01764	260.0	0	N/A	N/A
UniRef90	UHGV-1404667_8	UniRef90_A0A395X7A4	126.0	9.4e-36	CTP synthase	N/A
eggNOG-mapper	UHGV-1404667_8	476272.RUMHYD_01766	177.0	0	N/A	N/A
PHROG	UHGV-1404667_9	phrog_21718	194.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1404667_9	476272.RUMHYD_01768	267.0	0	N/A	N/A
PHROG	UHGV-1404667_10	phrog_22984	89.6	2.6e-26	N/A	unknown function
PHROG	UHGV-1404667_11	phrog_16490	200.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1404667_11	476272.RUMHYD_01770	247.0	0	N/A	N/A
PHROG	UHGV-1404667_12	phrog_20016	167.9	0	N/A	unknown function
UniRef90	UHGV-1404667_12	UniRef90_A0A345BPX4	113.0	1.8e-29	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-1404667_12	397290.C810_05214	112.0	8.35e-30	N/A	N/A
structural_annotation	UHGV-1404667_12	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1404667_13	phrog_28802	256.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1404667_13	476272.RUMHYD_01772	272.0	0	N/A	N/A
KOfam	UHGV-1404667_14	K00571	113.8	1.8e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1404667_14	phrog_23224	190.6	0	DNA methyltransferase	other
UniRef90	UHGV-1404667_14	UniRef90_A0A396PTY1	380.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1404667_14	888049.HMPREF8578_0680	345.0	0	DNA methylase	N/A
PADLOC	UHGV-1404667_14	MTase_II_00172	88.8	1.2e-27	Type II methyltransferase	RM
Pfam	UHGV-1404667_14	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1404667_14	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1404667_14	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
UniRef90	UHGV-1404667_15	UniRef90_UPI001D15D4B7	62.0	0.0000000000139	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-1404667_15	476272.RUMHYD_01773	64.3	0.000000000000289	Cysteine-rich KTR	N/A
Pfam	UHGV-1404667_15	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-1404667_15	PF14205,NF041070	N/A	N/A	N/A	N/A
PHROG	UHGV-1404667_16	phrog_194	82.1	8.6e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-1404667_16	UniRef90_UPI001D14C9C8	177.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1404667_16	476272.RUMHYD_01775	311.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1404667_16	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1404667_16	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1404667_17	phrog_544	158.7	0	major head protein	head and packaging
UniRef90	UHGV-1404667_17	UniRef90_A0A173R8P5	686.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1404667_17	1232453.BAIF02000011_gene3359	394.0	0	N/A	N/A
Pfam	UHGV-1404667_17	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1404667_17	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1404667_18	phrog_541	105.3	3.2e-31	head-tail adaptor	connector
eggNOG-mapper	UHGV-1404667_18	476272.RUMHYD_01778	222.0	0	N/A	N/A
PHROG	UHGV-1404667_19	phrog_3366	109.6	2.1e-32	N/A	unknown function
eggNOG-mapper	UHGV-1404667_19	476272.RUMHYD_01779	287.0	0	N/A	N/A
structural_annotation	UHGV-1404667_19	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1404667_20	phrog_556	78.0	7.8e-23	minor head protein	head and packaging
UniRef90	UHGV-1404667_20	UniRef90_UPI0008B4CFF0	156.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1404667_20	476272.RUMHYD_01780	305.0	0	N/A	N/A
Pfam	UHGV-1404667_20	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1404667_20	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1404667_21	phrog_3266	95.1	4.8e-28	tail completion	connector
eggNOG-mapper	UHGV-1404667_21	476272.RUMHYD_01781	287.0	0	N/A	N/A
structural_annotation	UHGV-1404667_21	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1404667_22	phrog_3099	122.3	3.2e-36	N/A	unknown function
eggNOG-mapper	UHGV-1404667_22	476272.RUMHYD_01782	280.0	0	N/A	N/A
structural_annotation	UHGV-1404667_22	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1404667_23	phrog_11299	102.7	2.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-1404667_23	33035.JPJF01000106_gene3125	100.0	4.96e-25	N/A	N/A
structural_annotation	UHGV-1404667_23	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1404667_24	phrog_706	122.1	2.7e-36	N/A	unknown function
UniRef90	UHGV-1404667_24	UniRef90_UPI00156F9D1C	283.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1404667_24	411459.RUMOBE_01383	207.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1404667_24	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1404667_24	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1404667_25	phrog_1535	613.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1404667_25	UniRef90_A0A1C5N853	171.0	9.36e-40	Phage-related protein	N/A
eggNOG-mapper	UHGV-1404667_25	411459.RUMOBE_01384	168.0	1.76e-39	phage tail tape measure protein	N/A
COG	UHGV-1404667_25	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1404667_26	phrog_1194	60.1	3.4e-17	N/A	unknown function
structural_annotation	UHGV-1404667_26	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1404667_27	phrog_6616	520.0	0	tail protein	tail
UniRef90	UHGV-1404667_27	UniRef90_UPI0015714EA8	884.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1404667_27	1121866.AUGK01000003_gene1439	255.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1404667_27	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-1404667_27	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1404667_27	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-1404667_28	UniRef90_A0A7X3MEX5	90.5	9.37e-21	H_lectin domain-containing protein	N/A
KOfam	UHGV-1404667_30	K03733	230.4	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-1404667_30	phrog_1	167.7	0	integrase	integration and excision
UniRef90	UHGV-1404667_30	UniRef90_UPI0011DD7E30	348.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1404667_30	1235793.C809_01951	342.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1404667_30	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1404667_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1404667_30	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1404667_30	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
COG	UHGV-1404667_32	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1404667	Yes	24,980	41	55	1
UHGV-0058913	No	22,143	42	49	1
UHGV-1686482	No	17,169	41	38	1