vOTU vOTU-025000

vOTU: vOTU-025000

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-025000
Number of genomes	3
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vOTU-025000
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Merdibacter → Merdibacter sp900759455
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0067186
Biosample ID	N/A
Genome length (bp)	30,690 bps
CheckV completeness	85.55% (Medium-quality)
CDS count	49
CDS density	95.51%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Merdibacter → Merdibacter sp900759455	Total connections	2	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 85.55)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0067186_1	K01356	96.9	2.9e-28	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0067186_1	phrog_4	126.6	1.9e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-0067186_1	UniRef90_UPI00096A9788	325.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0067186_1	999413.HMPREF1094_00245	211.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0067186_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0067186_1	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0067186_1	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0067186_1	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-0067186_2	UniRef90_A0A412PAU2	75.1	2.29e-16	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0067186_2	1232446.BAIE02000002_gene796	60.5	0.0000000000292	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0067186_2	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
structural_annotation	UHGV-0067186_2	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0067186_8	phrog_2113	54.2	0.000000000000002	N/A	unknown function
UniRef90	UHGV-0067186_8	UniRef90_UPI000C85DE39	59.3	0.00000000374	HTH domain-containing protein	N/A
eggNOG-mapper	UHGV-0067186_8	1160721.RBI_II00485	50.1	0.00000193	N/A	N/A
PHROG	UHGV-0067186_9	phrog_2514	125.7	2.7e-37	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0067186_9	UniRef90_UPI000E3E3572	140.0	3.16e-37	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0067186_9	146269.A8YQM0_9CAUD	130.0	6.16e-34	calcium ion binding	N/A
Pfam	UHGV-0067186_9	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
structural_annotation	UHGV-0067186_9	PF09681,TIGR01714,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0067186_10	K02314	143.2	1.99965e-42	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0067186_10	phrog_19	149.2	2.94273e-44	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0067186_10	UniRef90_H1B475	295.0	0	SF4 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0067186_10	1232446.BAIE02000002_gene817	269.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0067186_10	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0067186_10	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0067186_10	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067186_12	PF02768,PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
KOfam	UHGV-0067186_13	K04763	88.6	9.1e-26	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0067186_13	phrog_216	130.0	8.6e-39	integrase	integration and excision
UniRef90	UHGV-0067186_13	UniRef90_G1VXJ6	312.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0067186_13	1232446.BAIE02000002_gene805	189.0	0	Integrase	N/A
Pfam	UHGV-0067186_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0067186_13	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0067186_13	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067186_14	PF18358	N/A	N/A	N/A	N/A
PHROG	UHGV-0067186_15	phrog_2245	95.3	6.1e-28	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0067186_15	UniRef90_A0A4U9RLZ8	66.2	0.0000000000032	N/A	N/A
eggNOG-mapper	UHGV-0067186_15	1567010.A0A0A7RU90_9VIRU	67.4	0.000000000000546	protein disulfide oxidoreductase activity	N/A
structural_annotation	UHGV-0067186_15	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
UniRef90	UHGV-0067186_16	UniRef90_UPI000EF4F8BA	84.7	4.96e-20	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0067186_17	428127.EUBDOL_01238	50.8	0.000000436	N/A	N/A
UniRef90	UHGV-0067186_18	UniRef90_A0A3R6KSP4	93.2	7.68e-22	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0067186_18	1235794.C811_01545	93.6	2.11e-22	N/A	N/A
eggNOG-mapper	UHGV-0067186_20	1120978.KB894087_gene426	61.6	0.000000000396	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0067186_20	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
PHROG	UHGV-0067186_22	phrog_9107	50.5	0.000000000000031	N/A	unknown function
eggNOG-mapper	UHGV-0067186_22	562743.JH976434_gene1036	67.8	0.000000000000042	N/A	N/A
PHROG	UHGV-0067186_26	phrog_424	98.4	8e-29	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0067186_26	UniRef90_R7J621	245.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0067186_26	1226322.HMPREF1545_02186	221.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0067186_26	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0067186_26	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0067186_26	PF01507,MF_00063,TIGR00268,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067186_28	PF04319,TIGR00686	N/A	N/A	N/A	N/A
PHROG	UHGV-0067186_29	phrog_36	56.5	5.7e-16	transcriptional regulator	transcription regulation
Pfam	UHGV-0067186_29	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0067186_29	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0067186_31	phrog_119	60.5	2.6e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0067186_31	UniRef90_A0A3E3ADS4	155.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0067186_31	1232446.BAIE02000002_gene820	155.0	0	HNH nucleases	N/A
COG	UHGV-0067186_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0067186_32	phrog_361	100.3	1.5e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0067186_32	UniRef90_UPI000E41E610	144.0	3.06044e-42	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0067186_32	1235798.C817_04581	143.0	1.5106e-42	Phage terminase, small subunit	N/A
Pfam	UHGV-0067186_32	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0067186_32	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0067186_33	phrog_9	296.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0067186_33	UniRef90_UPI001F1BD989	940.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0067186_33	1232446.BAIE02000002_gene823	908.0	0	Phage Terminase	N/A
Pfam	UHGV-0067186_33	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0067186_33	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0067186_33	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0067186_33	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0067186_34	phrog_12	170.3	0	portal protein	head and packaging
UniRef90	UHGV-0067186_34	UniRef90_UPI000E3FF410	506.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0067186_34	1232446.BAIE02000002_gene824	494.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0067186_34	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0067186_34	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0067186_34	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0067186_34	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0067186_35	K06904	141.0	1.19993e-41	N/A	N/A
PHROG	UHGV-0067186_35	phrog_80	163.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0067186_35	UniRef90_UPI001D141099	243.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0067186_35	1232446.BAIE02000002_gene825	228.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0067186_35	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0067186_35	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0067186_35	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0067186_35	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0067186_36	phrog_10	165.5	0	major head protein	head and packaging
UniRef90	UHGV-0067186_36	UniRef90_A0A1Y4R494	555.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0067186_36	642492.Clole_0744	371.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0067186_36	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0067186_36	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0067186_36	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0067186_36	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0067186_36	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0067186_37	phrog_2550	65.9	4e-19	N/A	unknown function
UniRef90	UHGV-0067186_37	UniRef90_R5V091	63.9	0.000000000012	Phage related protein	N/A
eggNOG-mapper	UHGV-0067186_37	1235798.C817_04586	88.2	6.37e-22	N/A	N/A
structural_annotation	UHGV-0067186_37	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0067186_38	phrog_19734	103.7	1.5e-30	N/A	unknown function
UniRef90	UHGV-0067186_38	UniRef90_A0A3R6AW46	139.0	1.68e-40	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0067186_38	1235798.C817_04587	122.0	1.27e-34	N/A	N/A
structural_annotation	UHGV-0067186_38	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0067186_39	1232446.BAIE02000002_gene829	123.0	3.61e-35	N/A	N/A
structural_annotation	UHGV-0067186_39	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0067186_40	phrog_5	41.0	0.000000000046	tail completion or Neck1 protein	connector
UniRef90	UHGV-0067186_40	UniRef90_R6UNR2	194.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0067186_40	908340.HMPREF9406_2573	194.0	0	N/A	N/A
structural_annotation	UHGV-0067186_40	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0067186_41	phrog_88	101.1	1e-29	major tail protein	tail
UniRef90	UHGV-0067186_41	UniRef90_N9WHZ7	316.0	0	Phi13 family phage major tail protein	N/A
eggNOG-mapper	UHGV-0067186_41	33035.JPJF01000039_gene278	211.0	0	N/A	N/A
structural_annotation	UHGV-0067186_41	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0067186_44	K20478	55.8	9.7e-17	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0067186_44	phrog_5218	369.9	0	N/A	unknown function
UniRef90	UHGV-0067186_44	UniRef90_N9V933	853.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0067186_44	908340.HMPREF9406_2570	862.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-0067186_44	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0067186_44	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0067186_44	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0067186_45	phrog_33	68.6	1.6e-19	distal tail protein Dit	tail
UniRef90	UHGV-0067186_45	UniRef90_UPI001D024C2F	248.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0067186_45	908340.HMPREF9406_2569	248.0	0	phage tail	N/A
COG	UHGV-0067186_45	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0067186_45	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0067186_46	phrog_1067	301.2	0	minor head protein	head and packaging
UniRef90	UHGV-0067186_46	UniRef90_UPI001D01FD0A	548.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0067186_46	908340.HMPREF9406_2568	523.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0067186_46	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0067186_46	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0067186_46	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0067186_47	phrog_3267	320.7	0	tail protein	tail
UniRef90	UHGV-0067186_47	UniRef90_R9C033	455.0	0	YkqB	N/A
eggNOG-mapper	UHGV-0067186_47	207656.S6BUV4_9CAUD	333.0	0	N/A	N/A
structural_annotation	UHGV-0067186_47	PF02010,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
PHROG	UHGV-0067186_48	phrog_2929	73.5	1.2e-21	tail fiber protein	tail
structural_annotation	UHGV-0067186_48	PF04862,NF033675,COG4935	N/A	N/A	N/A	N/A
PHROG	UHGV-0067186_49	phrog_372	135.0	7.4e-40	tail protein	tail
UniRef90	UHGV-0067186_49	UniRef90_A0A6N8U5G4	262.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0067186_49	1540091.A0A0A0RPE7_9CAUD	79.3	0.000000000000807	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0067186_49	PF05895	N/A	N/A	N/A	DUF859

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0067186	Yes	30,690	39	86	1
UHGV-1407083	No	25,167	40	70	1
UHGV-1419286	No	21,766	39	61	1