vOTU vOTU-025015

vOTU: vOTU-025015

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-025015
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00153 → vSUBFAM-01580 → vOTU-025015
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales
Host range breadth	Order
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1475706
Biosample ID	N/A
Genome length (bp)	31,692 bps
CheckV completeness	79.55% (Medium-quality)
CDS count	52
CDS density	96.16%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales	Total connections	5	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → Borkfalkiaceae → UBA10281 → UBA10281 sp900548285	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 79.55)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-1475706_6	PF18902	N/A	N/A	N/A	DUF5658
structural_annotation	UHGV-1475706_6	PF18902	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1475706_7	1408415.JHXL01000001_gene403	59.7	0.0000017	deoxyhypusine monooxygenase activity	N/A
COG	UHGV-1475706_7	COG1413	N/A	N/A	HEAT repeat	N/A
structural_annotation	UHGV-1475706_7	PF01079,NF038136	N/A	N/A	N/A	N/A
PHROG	UHGV-1475706_9	phrog_3287	73.7	9.2e-22	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1475706_9	1232449.BAHV02000016_gene1816	211.0	0	N/A	N/A
structural_annotation	UHGV-1475706_9	PF11134,MF_01282,TIGR03300,COG2319	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1475706_10	1232449.BAHV02000016_gene1817	60.5	0.0000000142	N/A	N/A
structural_annotation	UHGV-1475706_10	PF20387	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1475706_11	PF07100,COG4288	N/A	N/A	N/A	N/A
PHROG	UHGV-1475706_12	phrog_267	86.3	3.4e-25	major head protein	head and packaging
UniRef90	UHGV-1475706_12	UniRef90_A0A7C6CNA9	172.0	0	P22 coat protein-protein 5 domain protein	N/A
eggNOG-mapper	UHGV-1475706_12	665956.HMPREF1032_03906	275.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-1475706_12	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1475706_15	phrog_156	147.2	6.86636e-44	portal protein	head and packaging
UniRef90	UHGV-1475706_15	UniRef90_A0A8D9UHD1	292.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1475706_15	1121091.AUMP01000003_gene2583	233.0	0	N/A	N/A
structural_annotation	UHGV-1475706_15	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1475706_17	phrog_24361	90.6	1e-26	terminase	head and packaging
UniRef90	UHGV-1475706_17	UniRef90_R6ELB5	441.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-1475706_17	652103.Rpdx1_2950	192.0	0	Mu-like prophage FluMu protein gp28	N/A
COG	UHGV-1475706_17	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-1475706_17	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-1475706_18	UniRef90_UPI000B34C540	79.7	0.00000000000000162	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1475706_18	PF13518	N/A	N/A	Helix-turn-helix domain	HTH_28
structural_annotation	UHGV-1475706_18	PF06056,COG2963	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1475706_20	PF04545,MF_00674,NF008895,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-1475706_22	phrog_3136	110.6	3.5e-33	N/A	unknown function
UniRef90	UHGV-1475706_22	UniRef90_UPI001C02A61B	112.0	5.34e-27	ASCH domain-containing protein	N/A
structural_annotation	UHGV-1475706_22	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-1475706_24	K02338	41.5	2.1e-17	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	N/A
COG	UHGV-1475706_24	COG0592	N/A	N/A	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	N/A
structural_annotation	UHGV-1475706_24	PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1475706_26	PF04456,MF_02244,NF001670,COG1550	N/A	N/A	N/A	N/A
PHROG	UHGV-1475706_29	phrog_478	112.5	2.1e-33	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1475706_29	UniRef90_R6E548	162.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-1475706_29	1123263.AUKY01000096_gene1821	94.4	3.88e-23	N/A	N/A
eggNOG-mapper	UHGV-1475706_32	1235835.C814_01168	57.0	0.000000000562	N/A	N/A
KOfam	UHGV-1475706_33	K00558	197.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1475706_33	phrog_116	220.3	0	DNA methyltransferase	other
UniRef90	UHGV-1475706_33	UniRef90_A0A7K3ZBD4	368.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1475706_33	397290.C810_05213	316.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1475706_33	MTase_II_00058	153.5	0	Type II methyltransferase	RM
Pfam	UHGV-1475706_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1475706_33	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1475706_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1475706_33	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1475706_34	phrog_8489	245.5	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1475706_34	UniRef90_S1N930	190.0	0	Phage replication initiation protein	N/A
eggNOG-mapper	UHGV-1475706_34	1139219.I569_01402	192.0	0	DnaD domain protein	N/A
COG	UHGV-1475706_34	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1475706_34	TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-1475706_35	K03111	143.5	1.99965e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1475706_35	phrog_44	142.5	2.20004e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1475706_35	UniRef90_A0A3D5ZRJ4	162.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1475706_35	1089548.KI783301_gene2021	125.0	2.95e-35	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1475706_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1475706_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1475706_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1475706_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1475706_35	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1475706_37	phrog_7370	71.3	9.5e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1475706_37	UniRef90_A0A2V2FQC1	118.0	1.41e-32	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1475706_37	445972.ANACOL_01826	87.0	5.62e-21	HNH nucleases	N/A
PHROG	UHGV-1475706_38	phrog_72	66.5	3e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1475706_38	411471.SUBVAR_05829	76.6	0.00000000000000517	N/A	N/A
Pfam	UHGV-1475706_38	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-1475706_38	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1475706_39	phrog_434	62.0	8.9e-18	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1475706_39	UniRef90_B0PAM4	210.0	0	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-1475706_39	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1475706_40	phrog_659	49.9	0.00000000000004	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1475706_40	UniRef90_UPI00122ECE7D	149.0	1.46996e-41	N/A	N/A
eggNOG-mapper	UHGV-1475706_40	445972.ANACOL_01823	143.0	6.62e-40	N/A	N/A
Pfam	UHGV-1475706_40	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1475706_40	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
Pfam	UHGV-1475706_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1475706_43	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1475706_46	UniRef90_UPI000465CFF8	56.2	0.00000000631	sporulation transcriptional regulator SpoIIID	N/A
eggNOG-mapper	UHGV-1475706_46	1385512.N784_13400	47.4	0.00000438	N/A	N/A
structural_annotation	UHGV-1475706_46	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1475706_47	K01356	137.5	1.3e-40	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1475706_47	phrog_4	119.2	4e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-1475706_47	UniRef90_UPI0018984762	245.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1475706_47	411473.RUMCAL_03095	199.0	0	N/A	N/A
Pfam	UHGV-1475706_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1475706_47	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1475706_47	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1475706_47	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-1475706_50	K14059	167.9	0	int; integrase	N/A
PHROG	UHGV-1475706_50	phrog_1	155.4	0	integrase	integration and excision
UniRef90	UHGV-1475706_50	UniRef90_A0A353EXX9	469.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1475706_50	596330.HMPREF0628_1084	148.0	1.83e-38	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1475706_50	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1475706_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1475706_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1475706_50	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1475706	Yes	31,692	42	80	1
UHGV-0065851	No	30,798	42	77	1
UHGV-1516510	No	30,798	42	77	1
UHGV-1408243	No	28,670	42	72	1
UHGV-1643116	No	14,588	44	36	1