vOTU vOTU-025126

vOTU: vOTU-025126

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-025126
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01130 → vGENUS-20989 → vOTU-025126
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0050927
Biosample ID	N/A
Genome length (bp)	28,708 bps
CheckV completeness	66.33% (Medium-quality)
CDS count	45
CDS density	95.34%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	418	Host agreement	97.37
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira sp003537285	Total connections	12	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 66.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0050927_2	phrog_6616	278.6	0	tail protein	tail
UniRef90	UHGV-0050927_2	UniRef90_A0A3D3U8S7	137.0	2.03e-30	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0050927_2	33035.JPJF01000043_gene1002	145.0	9.49e-34	N/A	N/A
PHROG	UHGV-0050927_3	phrog_1194	71.3	1.2e-20	N/A	unknown function
structural_annotation	UHGV-0050927_3	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0050927_4	phrog_1535	145.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0050927_4	UniRef90_A0A1I2KTM2	95.9	1.81e-16	Phage-related protein	N/A
eggNOG-mapper	UHGV-0050927_4	1449050.JNLE01000003_gene3881	143.0	7.05e-32	domain protein	N/A
COG	UHGV-0050927_4	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0050927_5	phrog_706	137.2	1.10001e-40	N/A	unknown function
UniRef90	UHGV-0050927_5	UniRef90_UPI0011DC8B0C	192.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0050927_5	1304866.K413DRAFT_3045	181.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0050927_5	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0050927_5	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0050927_6	phrog_11299	112.9	2.4e-33	N/A	unknown function
eggNOG-mapper	UHGV-0050927_6	1298920.KI911353_gene2067	103.0	4.01e-26	N/A	N/A
PHROG	UHGV-0050927_7	phrog_3099	152.3	2.8026e-45	N/A	unknown function
eggNOG-mapper	UHGV-0050927_7	1160721.RBI_II00532	204.0	0	N/A	N/A
structural_annotation	UHGV-0050927_7	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0050927_8	phrog_3266	71.9	8.1e-21	tail completion	connector
eggNOG-mapper	UHGV-0050927_8	1449050.JNLE01000003_gene3885	103.0	3.03e-26	N/A	N/A
structural_annotation	UHGV-0050927_8	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0050927_9	phrog_556	83.3	2.3e-24	minor head protein	head and packaging
UniRef90	UHGV-0050927_9	UniRef90_A0A1M7NJ72	109.0	4.77e-28	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0050927_9	1304866.K413DRAFT_3041	118.0	2.5e-32	N/A	N/A
Pfam	UHGV-0050927_9	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0050927_9	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0050927_10	phrog_3366	68.4	4.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0050927_10	1449050.JNLE01000003_gene3887	99.0	3.58e-25	N/A	N/A
Pfam	UHGV-0050927_10	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0050927_10	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0050927_12	phrog_541	80.7	1.6e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-0050927_12	1449050.JNLE01000003_gene3888	91.3	5.15e-22	N/A	N/A
PHROG	UHGV-0050927_13	phrog_10	188.3	0	major head protein	head and packaging
UniRef90	UHGV-0050927_13	UniRef90_UPI001D090FF5	450.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0050927_13	1235792.C808_05368	436.0	0	Phage capsid family	N/A
Pfam	UHGV-0050927_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0050927_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0050927_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0050927_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0050927_14	phrog_2303	90.9	1.6e-26	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0050927_14	1321782.HMPREF1986_02267	147.0	5.67946e-42	N/A	N/A
structural_annotation	UHGV-0050927_14	PF10788,MF_02110	N/A	N/A	N/A	N/A
KOfam	UHGV-0050927_15	K07584	85.3	8.6e-25	N/A	N/A
PHROG	UHGV-0050927_15	phrog_4478	71.2	1.2e-20	peptidase	other
UniRef90	UHGV-0050927_15	UniRef90_A0A2Z4UEY6	80.1	1.58e-17	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0050927_15	411470.RUMGNA_03236	72.0	0.00000000000000362	Cysteine protease Prp	N/A
Pfam	UHGV-0050927_15	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0050927_15	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0050927_15	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0050927_16	phrog_581	92.5	5.1e-27	minor head protein	head and packaging
eggNOG-mapper	UHGV-0050927_16	1449050.JNLE01000003_gene3892	133.0	1.75e-35	Phage minor capsid protein 2	N/A
Pfam	UHGV-0050927_16	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0050927_16	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0050927_18	phrog_581	215.4	0	minor head protein	head and packaging
UniRef90	UHGV-0050927_18	UniRef90_UPI001593C099	319.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0050927_18	1449050.JNLE01000003_gene3892	220.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0050927_18	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0050927_18	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0050927_19	phrog_533	392.4	0	portal protein	head and packaging
UniRef90	UHGV-0050927_19	UniRef90_UPI00156E473F	575.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0050927_19	411461.DORFOR_00749	491.0	0	COG NOG25118 non supervised orthologous group	N/A
Pfam	UHGV-0050927_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0050927_19	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0050927_20	K06909	226.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0050927_20	phrog_2	114.5	1.5e-33	terminase large subunit	head and packaging
UniRef90	UHGV-0050927_20	UniRef90_UPI0015714730	625.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0050927_20	1235799.C818_04217	604.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0050927_20	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0050927_20	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0050927_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0050927_20	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0050927_21	K07474	135.9	4.5e-40	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0050927_21	phrog_2606	301.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-0050927_21	UniRef90_A0A6B4XMY8	294.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0050927_21	1415774.U728_838	294.0	0	terminase, small subunit	N/A
Pfam	UHGV-0050927_21	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0050927_21	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0050927_21	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0050927_21	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0050927_22	phrog_36	50.8	0.000000000000036	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0050927_22	411490.ANACAC_00789	58.5	0.0000000103	N/A	N/A
structural_annotation	UHGV-0050927_22	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0050927_23	phrog_625	64.4	1.2e-18	N/A	unknown function
UniRef90	UHGV-0050927_23	UniRef90_A0A413YU40	209.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0050927_23	397290.C810_01502	122.0	2.2e-34	N/A	N/A
structural_annotation	UHGV-0050927_23	PF12961,COG2028	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0050927_24	397290.C810_01505	139.0	6.48941e-42	N/A	N/A
PHROG	UHGV-0050927_25	phrog_20593	111.2	4.2e-33	N/A	unknown function
PHROG	UHGV-0050927_28	phrog_2118	105.0	7.1e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050927_28	UniRef90_A0A2U2EKN9	225.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0050927_28	1235799.C818_02668	172.0	0	endonuclease activity	N/A
Pfam	UHGV-0050927_28	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0050927_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0050927_28	PF13395,TIGR02646,COG1403	N/A	N/A	N/A	N/A
KOfam	UHGV-0050927_31	K00558	229.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0050927_31	phrog_116	263.6	0	DNA methyltransferase	other
UniRef90	UHGV-0050927_31	UniRef90_A0A174GZ53	933.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0050927_31	1235800.C819_02255	714.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0050927_31	MTase_II_00020	116.6	8.6e-37	Type II methyltransferase	RM
Pfam	UHGV-0050927_31	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0050927_31	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0050927_31	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0050927_32	K07319	92.0	4e-27	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0050927_32	phrog_16	227.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050927_32	UniRef90_A0A356C6C6	1483.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-0050927_32	1298920.KI911353_gene2709	1390.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0050927_32	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0050927_32	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0050927_32	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0050927_32	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0050927_34	phrog_7566	95.5	3.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0050927_34	1235800.C819_00511	100.0	1.63e-24	N/A	N/A
structural_annotation	UHGV-0050927_35	PF02179,NF011863	N/A	N/A	N/A	N/A
KOfam	UHGV-0050927_36	K03469	69.0	1e-19	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0050927_36	phrog_531	66.3	5.4e-19	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050927_36	UniRef90_A0A413YU26	262.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0050927_36	1121447.JONL01000002_gene2134	77.0	8.72e-16	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0050927_36	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0050927_36	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0050927_36	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0050927_37	phrog_3584	166.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0050927_37	641107.CDLVIII_1314	152.0	1.53022e-42	N/A	N/A
structural_annotation	UHGV-0050927_37	PF21578	N/A	N/A	N/A	N/A
UniRef90	UHGV-0050927_44	UniRef90_UPI000E52936A	84.3	1.38e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0050927_44	887929.HMP0721_1290	76.3	3.32e-17	Helix-turn-helix domain of resolvase	N/A
structural_annotation	UHGV-0050927_44	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0050927_45	887929.HMP0721_1291	60.1	0.00000000026	Peptidase S24-like	N/A
Pfam	UHGV-0050927_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0050927_45	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0050927	Yes	28,708	38	66	1
UHGV-1405211	No	28,708	38	66	1
UHGV-1420926	No	23,134	38	58	1
UHGV-1594710	No	11,812	37	30	1