vOTU vOTU-025371

vOTU: vOTU-025371

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-025371
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00017 → vOTU-025371
Host lineage
Host range breadth
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1462482
Biosample ID	SAMEA2738133
Genome length (bp)	35,434 bps
CheckV completeness	59.25% (Medium-quality)
CDS count	35
CDS density	95.64%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 59.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1462482_1	K02319	55.6	1.9e-16	pol; DNA polymerase, archaea type [EC:2.7.7.7]	N/A
PHROG	UHGV-1462482_1	phrog_4210	1526.8	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1462482_1	UniRef90_A0A6G5Y767	1173.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-1462482_1	475178.B2BTL9_9CAUD	1077.0	0	nucleic acid binding	N/A
Pfam	UHGV-1462482_1	PF19263	N/A	N/A	N/A	DUF5906
structural_annotation	UHGV-1462482_1	PF00136,PF09250,MF_04100,TIGR00592,COG0417	N/A	N/A	N/A	N/A
PHROG	UHGV-1462482_2	phrog_4787	110.9	8.1e-33	single strand annealing protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1462482_2	475178.B2BTN0_9CAUD	89.0	2.92e-20	N/A	N/A
structural_annotation	UHGV-1462482_2	PF21265,MF_04153	N/A	N/A	N/A	N/A
PHROG	UHGV-1462482_3	phrog_62	145.2	1.96182e-44	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1462482_3	UniRef90_A0A5J6D7C2	389.0	0	Helicase	N/A
eggNOG-mapper	UHGV-1462482_3	742740.HMPREF9474_02299	363.0	0	Helicase conserved C-terminal domain	N/A
COG	UHGV-1462482_3	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1462482_3	PF02399,MF_01821,NF038318,COG0553	N/A	N/A	N/A	N/A
UniRef90	UHGV-1462482_4	UniRef90_A0A5J6TG45	104.0	4.09e-27	Nuclease	N/A
eggNOG-mapper	UHGV-1462482_4	742740.HMPREF9474_02280	113.0	1.89e-31	N/A	N/A
structural_annotation	UHGV-1462482_4	PF01870,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1462482_5	phrog_3953	161.6	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1462482_5	UniRef90_D4P7X3	163.0	0	Gp105	N/A
eggNOG-mapper	UHGV-1462482_5	1476888.X4YEL4_9CAUD	179.0	0	N/A	N/A
structural_annotation	UHGV-1462482_5	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1462482_6	phrog_4291	804.7	0	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1462482_6	UniRef90_A0A6M3SVN7	672.0	0	Helix-turn-helix DNA binding domain protein	N/A
eggNOG-mapper	UHGV-1462482_6	428125.CLOLEP_01400	623.0	0	Bacterial regulatory proteins, luxR family	N/A
Pfam	UHGV-1462482_6	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
Pfam	UHGV-1462482_6	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-1462482_6	PF05183	N/A	N/A	N/A	N/A
PHROG	UHGV-1462482_7	phrog_4303	65.9	5.6e-19	N/A	unknown function
UniRef90	UHGV-1462482_7	UniRef90_D4P7L8	59.3	0.00000000104	Gp107	N/A
eggNOG-mapper	UHGV-1462482_7	691965.D4P7L8_9CAUD	59.3	0.000000000175	N/A	N/A
PHROG	UHGV-1462482_9	phrog_6918	52.4	0.0000000000000085	holin	lysis
Pfam	UHGV-1462482_9	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
PHROG	UHGV-1462482_11	phrog_4321	146.0	9.94922e-44	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1462482_11	UniRef90_X4YEE5	123.0	1.07e-33	Homing endonuclease	N/A
eggNOG-mapper	UHGV-1462482_11	475178.B2BTG9_9CAUD	110.0	1.28e-29	N/A	N/A
KOfam	UHGV-1462482_12	K19721	157.6	0	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-1462482_12	phrog_32123	427.6	0	N/A	unknown function
UniRef90	UHGV-1462482_12	UniRef90_UPI001CED1953	319.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1462482_12	997830.HMPREF1124_0614	327.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1462482_12	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1462482_12	COG3468	N/A	N/A	Autotransporter adhesin AidA	N/A
structural_annotation	UHGV-1462482_12	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-1462482_13	phrog_8577	146.4	2.20004e-43	endolysin	lysis
UniRef90	UHGV-1462482_13	UniRef90_UPI00128D03D8	248.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1462482_13	1314.HKU360_01469	175.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-1462482_13	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1462482_13	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-1462482_13	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1462482_13	PF19127,PF05257,TIGR04035,TIGR02594,COG5263	N/A	N/A	N/A	N/A
PHROG	UHGV-1462482_15	phrog_7021	56.9	1.1e-17	N/A	unknown function
PHROG	UHGV-1462482_16	phrog_9	241.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1462482_16	UniRef90_A0A1I7FAT9	736.0	0	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
eggNOG-mapper	UHGV-1462482_16	742733.HMPREF9469_05033	724.0	0	Phage Terminase	N/A
Pfam	UHGV-1462482_16	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1462482_16	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1462482_16	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1462482_16	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1462482_17	phrog_12	109.8	2e-32	portal protein	head and packaging
UniRef90	UHGV-1462482_17	UniRef90_A0A3C2CGL3	317.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1462482_17	742740.HMPREF9474_02271	303.0	0	Phage portal protein	N/A
Pfam	UHGV-1462482_17	PF04860	N/A	N/A	Phage portal protein	Phage_portal
KOfam	UHGV-1462482_18	K06904	76.0	4.9e-22	N/A	N/A
PHROG	UHGV-1462482_18	phrog_3270	550.9	0	head maturation protease	head and packaging
UniRef90	UHGV-1462482_18	UniRef90_A0A6G5Y7H0	410.0	0	BIG2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1462482_18	1476888.X4YUP1_9CAUD	314.0	0	peptidase activity	N/A
Pfam	UHGV-1462482_18	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
Pfam	UHGV-1462482_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
structural_annotation	UHGV-1462482_18	PF05065,PF04586,MF_04119,TIGR01554,TIGR01543,COG4653,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1462482_19	phrog_4270	80.0	2.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-1462482_19	428125.CLOLEP_01413	62.8	0.0000000000422	N/A	N/A
PHROG	UHGV-1462482_20	phrog_2645	239.1	0	major tail protein	tail
UniRef90	UHGV-1462482_20	UniRef90_A0A2L1IW72	184.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-1462482_20	742740.HMPREF9474_02267	174.0	0	N/A	N/A
structural_annotation	UHGV-1462482_20	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1462482_21	phrog_4282	115.2	5.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-1462482_21	742733.HMPREF9469_05024	68.9	0.000000000000325	N/A	N/A
COG	UHGV-1462482_22	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
PHROG	UHGV-1462482_23	phrog_4338	157.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1462482_23	1537917.JU82_06570	111.0	1.44e-28	N/A	N/A
UniRef90	UHGV-1462482_24	UniRef90_UPI000659DD5E	70.1	0.000000000000609	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1462482_24	478749.BRYFOR_08514	67.0	0.0000000000016	N/A	N/A
PHROG	UHGV-1462482_25	phrog_4372	573.6	0	tail length tape measure protein	tail
UniRef90	UHGV-1462482_25	UniRef90_UPI001C26BAEC	271.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-1462482_25	742733.HMPREF9469_05020	276.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-1462482_25	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1462482_25	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1462482_25	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1462482_26	phrog_33	52.7	0.000000000000011	distal tail protein Dit	tail
UniRef90	UHGV-1462482_26	UniRef90_UPI00047A2AF3	60.1	0.000000398	phage tail family protein	N/A
eggNOG-mapper	UHGV-1462482_26	1540257.JQMW01000004_gene407	60.5	0.0000000489	tail component	N/A
COG	UHGV-1462482_26	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1462482_26	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1462482_27	phrog_1067	207.1	0	minor head protein	head and packaging
eggNOG-mapper	UHGV-1462482_27	1201292.DR75_1501	187.0	0	Prophage endopeptidase tail	N/A
NCBIFam	UHGV-1462482_27	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1462482_27	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1462482_27	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1462482	Yes	35,434	40	59	1
UHGV-1703932	No	17,222	41	29	1
UHGV-1631091	No	12,332	41	21	1