vOTU vOTU-025389

vOTU: vOTU-025389

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-025389
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00026 → vGENUS-00148 → vOTU-025389
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-0084490
Biosample ID	SAMEA2784480
Genome length (bp)	44,725 bps
CheckV completeness	78.53% (Medium-quality)
CDS count	72
CDS density	86.76%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	4237	Host agreement	90.96
PHIST-predicted host lineage	Bacteria → Firmicutes_A	Total connections	12	Host agreement	58.33

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 78.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0084490_2	658655.HMPREF0988_00919	110.0	2.8e-28	N/A	N/A
structural_annotation	UHGV-0084490_2	NF033819	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0084490_3	658655.HMPREF0988_00918	86.3	2.25e-21	N/A	N/A
PHROG	UHGV-0084490_4	phrog_59	132.6	5.1e-40	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0084490_4	UniRef90_UPI00189871DD	162.0	0	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0084490_4	357276.EL88_11520	146.0	2.98995e-41	HNH endonuclease domain protein	N/A
PADLOC	UHGV-0084490_4	HEase_00016	81.1	8.6e-25	homing endonuclease	RM
Pfam	UHGV-0084490_4	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0084490_4	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0084490_4	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
structural_annotation	UHGV-0084490_4	PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0084490_5	phrog_16490	193.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0084490_5	397290.C810_01328	199.0	0	N/A	N/A
PHROG	UHGV-0084490_7	phrog_20016	209.2	0	N/A	unknown function
UniRef90	UHGV-0084490_7	UniRef90_A0A285PT46	157.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0084490_7	397290.C810_05214	206.0	0	N/A	N/A
structural_annotation	UHGV-0084490_7	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0084490_8	UniRef90_UPI001F10428A	47.0	0.00000757	N/A	N/A
Pfam	UHGV-0084490_8	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0084490_8	PF19891,NF041793,COG4877	N/A	N/A	N/A	N/A
PHROG	UHGV-0084490_9	phrog_374	213.8	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0084490_9	UniRef90_A0A0H3N242	191.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0084490_9	673376.F2VHW3_9CAUD	184.0	0	sequence-specific DNA binding transcription factor activity	N/A
eggNOG-mapper	UHGV-0084490_10	658655.HMPREF0988_00915	112.0	4.31e-28	N/A	N/A
PHROG	UHGV-0084490_11	phrog_1233	62.0	1.1e-17	N/A	unknown function
UniRef90	UHGV-0084490_11	UniRef90_A0A345BPX6	87.8	2.11e-20	Metal-dependent hydrolase	N/A
eggNOG-mapper	UHGV-0084490_11	658655.HMPREF0988_00914	95.5	3.67e-24	N/A	N/A
Pfam	UHGV-0084490_11	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
eggNOG-mapper	UHGV-0084490_14	592031.GCWU000322_00057	80.9	0.00000000000000793	N/A	N/A
structural_annotation	UHGV-0084490_17	PF18701,NF000331,COG4014	N/A	N/A	N/A	N/A
KOfam	UHGV-0084490_19	K07727	58.9	1.5e-16	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0084490_19	UniRef90_A0A415M7P1	139.0	1.46996e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0084490_19	411470.RUMGNA_00075	103.0	3.8e-28	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0084490_19	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0084490_19	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0084490_22	UniRef90_A0A8D9UIS5	352.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0084490_22	658655.HMPREF0988_00895	87.0	5.92e-19	N/A	N/A
PHROG	UHGV-0084490_23	phrog_229	115.3	4.5e-34	MazG-like pyrophosphatase	other
UniRef90	UHGV-0084490_23	UniRef90_R7BGE2	171.0	0	MazG nucleotide pyrophosphohydrolase domain	N/A
eggNOG-mapper	UHGV-0084490_23	428125.CLOLEP_01391	97.4	2.13e-24	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-0084490_23	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-0084490_23	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0084490_23	PF03819,MF_01020,TIGR03188,COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-0084490_25	phrog_428	68.2	2.3e-19	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0084490_25	UniRef90_A0A412EKX5	137.0	3.51e-34	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0084490_25	1122172.KB890259_gene1441	125.0	6.65e-31	N/A	N/A
Pfam	UHGV-0084490_25	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0084490_25	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0084490_25	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-0084490_26	UniRef90_A0A8D9PGW1	129.0	5.82e-38	HTH psq-type domain-containing protein	N/A
Pfam	UHGV-0084490_26	PF05225	N/A	N/A	helix-turn-helix, Psq domain	HTH_psq
structural_annotation	UHGV-0084490_26	PF05225,COG2886	N/A	N/A	N/A	N/A
UniRef90	UHGV-0084490_32	UniRef90_UPI0011072322	73.2	0.0000000000000216	N/A	N/A
eggNOG-mapper	UHGV-0084490_32	1256908.HMPREF0373_00479	68.6	0.000000000000214	N/A	N/A
structural_annotation	UHGV-0084490_32	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0084490_33	phrog_38	142.6	2.90069e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0084490_33	UniRef90_A0A4Q5C857	961.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0084490_33	397290.C810_01390	666.0	0	chromosome segregation	N/A
Pfam	UHGV-0084490_33	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
COG	UHGV-0084490_33	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0084490_33	PF17289,PF03237,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0084490_34	phrog_36	63.8	3.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0084490_34	UniRef90_A0A352SH29	82.8	4.55e-18	RNA polymerase subunit sigma-70 (Fragment)	N/A
eggNOG-mapper	UHGV-0084490_34	97138.C820_00772	67.4	0.00000000000228	sigma factor activity	N/A
Pfam	UHGV-0084490_34	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0084490_34	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0084490_34	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
UniRef90	UHGV-0084490_35	UniRef90_A0A8D9UIR9	152.0	0	RimK-related lysine biosynthesis protein	N/A
PHROG	UHGV-0084490_36	phrog_64	136.7	1.3e-40	portal protein	head and packaging
UniRef90	UHGV-0084490_36	UniRef90_A0A8D9PG58	1043.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0084490_36	397290.C810_01397	461.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0084490_36	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0084490_36	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0084490_38	phrog_544	276.7	0	major head protein	head and packaging
UniRef90	UHGV-0084490_38	UniRef90_A0A8D9PGL1	642.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0084490_38	608534.GCWU000341_02293	333.0	0	N/A	N/A
NCBIFam	UHGV-0084490_38	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0084490_38	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0084490_39	UniRef90_A0A8D9UIY7	168.0	0	Rho termination factor	N/A
structural_annotation	UHGV-0084490_39	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-0084490_41	phrog_1863	53.8	0.0000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0084490_41	1232452.BAIB02000007_gene1606	53.5	0.000000301	N/A	N/A
PHROG	UHGV-0084490_42	phrog_1129	74.8	7.8e-22	holin	lysis
UniRef90	UHGV-0084490_42	UniRef90_A0A8D9UII9	164.0	0	Holin	N/A
eggNOG-mapper	UHGV-0084490_42	411461.DORFOR_00721	107.0	2.8e-29	N/A	N/A
Pfam	UHGV-0084490_42	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0084490_42	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0084490_43	1298920.KI911353_gene2656	65.1	0.0000000000252	N/A	N/A
structural_annotation	UHGV-0084490_43	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0084490_44	1298920.KI911353_gene2654	180.0	0	N/A	N/A
structural_annotation	UHGV-0084490_45	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0084490_46	UniRef90_A0A8D9PGN2	304.0	0	Major tail protein	N/A
structural_annotation	UHGV-0084490_46	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0084490_47	phrog_36112	68.4	8.1e-20	N/A	unknown function
UniRef90	UHGV-0084490_47	UniRef90_A0A8D9PG71	308.0	0	Tail assembly chaperone protein	N/A
eggNOG-mapper	UHGV-0084490_47	1298920.KI911353_gene2651	117.0	3.09e-31	N/A	N/A
structural_annotation	UHGV-0084490_47	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0084490_49	phrog_28918	75.8	3.7e-22	N/A	unknown function
UniRef90	UHGV-0084490_49	UniRef90_A0A8D9PGP0	685.0	0	Minor tail protein	N/A
eggNOG-mapper	UHGV-0084490_49	1298920.KI911353_gene2649	166.0	1.18998e-41	tape measure	N/A
COG	UHGV-0084490_49	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0084490_49	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0084490_50	phrog_1535	85.0	5.2e-26	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0084490_50	483218.BACPEC_01146	97.1	1.11e-17	domain protein	N/A
COG	UHGV-0084490_50	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0084490_51	phrog_23726	58.4	1e-31	N/A	unknown function
UniRef90	UHGV-0084490_51	UniRef90_A0A1M5TXV8	94.0	8.82e-20	Zinc-ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0084490_51	1384484.AEQU_1334	132.0	1.28e-34	cell wall organization	N/A
COG	UHGV-0084490_51	COG2247	N/A	N/A	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	N/A
PHROG	UHGV-0084490_53	phrog_2657	213.0	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0084490_53	UniRef90_R7BHB1	315.0	0	Phage regulatory protein Rha family	N/A
eggNOG-mapper	UHGV-0084490_53	33035.JPJF01000043_gene993	292.0	0	N/A	N/A
Pfam	UHGV-0084490_53	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0084490_53	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0084490_53	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0084490_53	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0084490_56	phrog_1194	66.2	4.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0084490_56	1232453.BAIF02000058_gene1638	65.1	0.00000000000761	N/A	N/A
structural_annotation	UHGV-0084490_56	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0084490_57	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0084490_58	phrog_6616	148.5	4.34403e-44	tail protein	tail
UniRef90	UHGV-0084490_58	UniRef90_A0A8D9PGP3	953.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-0084490_58	1294142.CINTURNW_1706	267.0	0	Phage minor structural protein	N/A
COG	UHGV-0084490_58	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0084490_58	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
KOfam	UHGV-0084490_60	K07273	137.8	9.99995e-41	acm; lysozyme	N/A
PHROG	UHGV-0084490_60	phrog_6745	93.0	3.6e-27	endolysin	lysis
UniRef90	UHGV-0084490_60	UniRef90_A0A174GRH8	217.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0084490_60	1235800.C819_00458	226.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0084490_60	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0084490_60	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0084490_60	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
KOfam	UHGV-0084490_61	K22300	59.9	5.2e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0084490_61	phrog_8	79.5	5.9e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0084490_61	UniRef90_A0A8D9UIK2	222.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0084490_61	445974.CLORAM_02966	85.5	8.68e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0084490_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0084490_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0084490_61	PF13560,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0084490_62	UniRef90_A0A8D9UIR6	129.0	4.83e-38	DNA-binding transcriptional regulator	N/A
eggNOG-mapper	UHGV-0084490_62	1121335.Clst_0370	94.7	5.29e-25	N/A	N/A
structural_annotation	UHGV-0084490_62	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0084490_63	phrog_463	187.0	0	anti-repressor	transcription regulation
UniRef90	UHGV-0084490_63	UniRef90_A0A285PXX7	283.0	0	ORF6C domain	N/A
eggNOG-mapper	UHGV-0084490_63	411490.ANACAC_00813	182.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0084490_63	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0084490_63	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0084490_63	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0084490_63	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
COG	UHGV-0084490_65	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0084490_65	PF10552	N/A	N/A	N/A	N/A
KOfam	UHGV-0084490_68	K03111	49.3	0.0000000000000044	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0084490_68	phrog_26861	125.2	3.7e-37	N/A	unknown function
UniRef90	UHGV-0084490_68	UniRef90_A0A8D9PGK1	233.0	0	Single strand binding protein	N/A
eggNOG-mapper	UHGV-0084490_68	515620.EUBELI_01590	223.0	0	N/A	N/A
Pfam	UHGV-0084490_68	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0084490_68	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0084490_68	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0084490_68	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0084490_70	K19171	114.7	9e-34	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0084490_70	phrog_77	201.8	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0084490_70	UniRef90_A0A8D9PGW5	987.0	0	Chromosome partition protein	N/A
eggNOG-mapper	UHGV-0084490_70	1298920.KI911353_gene2731	296.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0084490_70	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0084490_70	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0084490_70	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-0084490_71	phrog_1510	83.7	4.1e-25	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0084490_71	UniRef90_F8WPQ1	89.0	2.7e-21	Superinfection exclusion protein	N/A
eggNOG-mapper	UHGV-0084490_71	10752.A0MZA8_BPN4	82.4	2.34e-19	Pfam:Gp17	N/A
Pfam	UHGV-0084490_71	PF17420	N/A	N/A	Superinfection exclusion gene product 17	GP17
structural_annotation	UHGV-0084490_71	PF17420	N/A	N/A	N/A	N/A
PHROG	UHGV-0084490_72	phrog_4433	75.1	1.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0084490_72	886882.PPSC2_p0048	113.0	2.78e-28	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0084490_72	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0084490	Yes	44,725	37	79	1
UHGV-1515784	No	44,194	37	78	1
UHGV-2023037	No	42,581	37	75	1
UHGV-1464747	No	33,954	37	60	1
UHGV-1459181	No	33,794	37	59	1
UHGV-0182064	No	33,785	37	59	1