vOTU vOTU-025413

vOTU: vOTU-025413

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-025413
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00005 → vGENUS-04061 → vOTU-025413
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1506938
Biosample ID	SAMEA2338776
Genome length (bp)	35,797 bps
CheckV completeness	81.50% (Medium-quality)
CDS count	55
CDS density	91.91%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	383	Host agreement	74.67
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp001916855	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 81.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1506938_2	K14059	151.3	9.80909e-45	int; integrase	N/A
PHROG	UHGV-1506938_2	phrog_1	158.5	0	integrase	integration and excision
UniRef90	UHGV-1506938_2	UniRef90_A0A1C5W824	533.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1506938_2	693746.OBV_41260	300.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1506938_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1506938_2	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1506938_2	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1506938_3	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1506938_6	COG1321	N/A	N/A	N/A	N/A
UniRef90	UHGV-1506938_7	UniRef90_UPI00196819D3	57.0	0.0000000431	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1506938_7	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1506938_8	K22300	46.5	0.00000000000069	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1506938_8	UniRef90_A0A3D3Y6C1	68.6	0.0000000000000553	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1506938_8	796942.HMPREF9623_00878	55.1	0.0000000494	N/A	N/A
Pfam	UHGV-1506938_8	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1506938_8	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1506938_8	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1506938_9	UniRef90_A0A8D9PDM8	67.0	0.000000000000285	Pyocin activator protein	N/A
KOfam	UHGV-1506938_10	K24214	52.1	0.0000000000000063	OTOL1; otolin-1	N/A
PHROG	UHGV-1506938_10	phrog_4433	253.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1506938_10	573061.Clocel_3578	125.0	5.26e-30	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-1506938_10	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1506938_10	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1506938_10	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1506938_16	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-1506938_17	K03111	152.2	4.2039e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1506938_17	phrog_44	150.2	9.80909e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1506938_17	UniRef90_A0A810QFR8	189.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1506938_17	1007096.BAGW01000023_gene151	184.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1506938_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1506938_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1506938_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1506938_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1506938_17	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_18	phrog_15768	83.8	2.5e-24	N/A	unknown function
UniRef90	UHGV-1506938_18	UniRef90_A0A7J0BEJ2	91.7	7.11e-19	N/A	N/A
eggNOG-mapper	UHGV-1506938_18	1095750.HMPREF9970_1674	151.0	4.4197e-42	N/A	N/A
structural_annotation	UHGV-1506938_18	PF01978,MF_01819,NF041413,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-1506938_19	K02314	277.7	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1506938_19	phrog_19	248.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1506938_19	UniRef90_A0A3D1XEC3	426.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1506938_19	1408437.JNJN01000010_gene1232	189.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1506938_19	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1506938_19	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1506938_19	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1506938_19	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-1506938_20	K01160	60.9	3.5e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1506938_20	phrog_34	58.0	2e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1506938_20	UniRef90_A0A6B9SRR2	136.0	5.96e-39	Endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1506938_20	561177.ANHYDRO_01396	116.0	7.35e-32	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1506938_20	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1506938_20	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1506938_20	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1506938_22	K14440	60.4	7.2e-26	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1506938_22	phrog_62	199.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1506938_22	UniRef90_A0A845MVG4	640.0	0	Helicase	N/A
eggNOG-mapper	UHGV-1506938_22	394503.Ccel_3060	525.0	0	SNF2 family N-terminal domain	N/A
Pfam	UHGV-1506938_22	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1506938_22	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1506938_22	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1506938_22	PF06862,MF_01821,NF003426,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-1506938_23	K24451	141.2	6.30024e-42	zim; modification methylase	N/A
PHROG	UHGV-1506938_23	phrog_67	111.7	5.2e-33	DNA methyltransferase	other
UniRef90	UHGV-1506938_23	UniRef90_A0A845MWG4	536.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1506938_23	1120971.AUCA01000053_gene371	403.0	0	DNA methylase	N/A
PADLOC	UHGV-1506938_23	MTase_II_00139	112.1	7e-33	Type II methyltransferase	RM
Pfam	UHGV-1506938_23	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1506938_23	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1506938_23	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1506938_24	K00558	109.6	2.3e-32	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1506938_24	phrog_116	128.6	3.4e-38	DNA methyltransferase	other
UniRef90	UHGV-1506938_24	UniRef90_K1R461	330.0	0	DNA-cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1506938_24	588581.Cpap_0162	216.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1506938_24	oMTase_00004	195.9	0	orphan methyltransferase	RM
Pfam	UHGV-1506938_24	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1506938_24	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1506938_24	PF00145,TIGR00675	N/A	N/A	N/A	N/A
KOfam	UHGV-1506938_25	K00558	42.4	7.7e-19	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1506938_25	phrog_16528	79.9	1.9e-29	DNA methyltransferase	other
UniRef90	UHGV-1506938_25	UniRef90_A0A6L5TDR3	207.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1506938_25	657322.FPR_26610	189.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-1506938_25	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1506938_25	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
UniRef90	UHGV-1506938_27	UniRef90_UPI001654E08C	64.7	0.000000000144	N/A	N/A
eggNOG-mapper	UHGV-1506938_27	411470.RUMGNA_00214	71.6	0.000000000000246	N/A	N/A
Pfam	UHGV-1506938_27	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-1506938_30	693746.OBV_18010	124.0	3.22e-34	N/A	N/A
structural_annotation	UHGV-1506938_30	TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-1506938_31	K07474	112.2	8e-33	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1506938_31	phrog_51	104.3	8.9e-31	terminase small subunit	head and packaging
UniRef90	UHGV-1506938_31	UniRef90_UPI001D05F697	166.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-1506938_31	697281.Mahau_0566	83.2	2.18e-18	Terminase Small Subunit	N/A
Pfam	UHGV-1506938_31	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1506938_31	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1506938_31	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1506938_32	K06909	377.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1506938_32	phrog_5653	162.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1506938_32	UniRef90_A0A2U1BEH4	712.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1506938_32	33035.JPJF01000106_gene3136	461.0	0	Terminase small subunit	N/A
Pfam	UHGV-1506938_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1506938_32	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1506938_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1506938_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1506938_32	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_33	phrog_533	365.0	0	portal protein	head and packaging
UniRef90	UHGV-1506938_33	UniRef90_UPI0006C81717	702.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1506938_33	1226322.HMPREF1545_00044	614.0	0	N/A	N/A
Pfam	UHGV-1506938_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1506938_33	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_35	phrog_9479	139.3	1.90002e-41	N/A	unknown function
eggNOG-mapper	UHGV-1506938_35	1514668.JOOA01000002_gene2680	57.0	0.0000000136	N/A	N/A
structural_annotation	UHGV-1506938_35	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_36	phrog_8680	228.9	0	N/A	unknown function
UniRef90	UHGV-1506938_36	UniRef90_A0A3R6D7I3	262.0	0	N/A	N/A
eggNOG-mapper	UHGV-1506938_36	411470.RUMGNA_02208	240.0	0	N/A	N/A
Pfam	UHGV-1506938_36	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-1506938_36	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_37	phrog_581	296.4	0	minor head protein	head and packaging
UniRef90	UHGV-1506938_37	UniRef90_UPI001D080D49	566.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1506938_37	1226322.HMPREF1545_00046	381.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1506938_37	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1506938_37	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1506938_37	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1506938_38	PF18152	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_39	phrog_2303	54.5	0.0000000000000018	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1506938_39	1226322.HMPREF1545_00049	157.0	0	N/A	N/A
PHROG	UHGV-1506938_40	phrog_10	168.6	0	major head protein	head and packaging
UniRef90	UHGV-1506938_40	UniRef90_A0A2U1BEF2	511.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-1506938_40	1226322.HMPREF1545_00050	478.0	0	Phage capsid family	N/A
Pfam	UHGV-1506938_40	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1506938_40	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1506938_40	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1506938_40	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_41	phrog_541	107.2	9.3e-32	head-tail adaptor	connector
eggNOG-mapper	UHGV-1506938_41	411470.RUMGNA_02220	65.1	0.0000000000159	N/A	N/A
PHROG	UHGV-1506938_42	phrog_3366	85.6	5.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-1506938_42	1226322.HMPREF1545_00053	154.0	0	N/A	N/A
structural_annotation	UHGV-1506938_42	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_43	phrog_556	76.7	2.4e-22	minor head protein	head and packaging
UniRef90	UHGV-1506938_43	UniRef90_UPI00195E1497	195.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1506938_43	1226322.HMPREF1545_00054	158.0	0	Minor capsid protein	N/A
Pfam	UHGV-1506938_43	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1506938_43	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_44	phrog_3266	47.1	0.00000000000035	tail completion	connector
eggNOG-mapper	UHGV-1506938_44	1232443.BAIA02000078_gene24	149.0	7.00649e-45	N/A	N/A
structural_annotation	UHGV-1506938_44	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_45	phrog_3099	96.1	3.7e-28	N/A	unknown function
eggNOG-mapper	UHGV-1506938_45	693746.OBV_18150	227.0	0	N/A	N/A
structural_annotation	UHGV-1506938_45	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_46	phrog_11299	87.7	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-1506938_46	693746.OBV_18160	111.0	1.33e-29	N/A	N/A
structural_annotation	UHGV-1506938_46	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_47	phrog_706	124.8	6.3e-37	N/A	unknown function
UniRef90	UHGV-1506938_47	UniRef90_UPI000682A80B	248.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1506938_47	693746.OBV_18170	235.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1506938_47	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1506938_47	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_48	phrog_1535	107.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1506938_48	UniRef90_A0A810PX76	253.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1506938_48	1235797.C816_04182	473.0	0	SLT domain	N/A
COG	UHGV-1506938_48	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1506938_48	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_49	phrog_1194	118.0	4e-35	N/A	unknown function
UniRef90	UHGV-1506938_49	UniRef90_A0A4U9RD70	110.0	4.3e-29	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-1506938_49	469596.HMPREF9488_01317	117.0	1.59e-32	N/A	N/A
Pfam	UHGV-1506938_49	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1506938_49	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_50	phrog_6616	108.6	5.9e-33	tail protein	tail
UniRef90	UHGV-1506938_50	UniRef90_R5GWP5	66.6	0.0000000571	KID repeat family protein	N/A
eggNOG-mapper	UHGV-1506938_50	469596.HMPREF9488_01318	287.0	0	N/A	N/A
structural_annotation	UHGV-1506938_50	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_51	phrog_372	240.3	0	tail protein	tail
UniRef90	UHGV-1506938_51	UniRef90_UPI001373A0FD	240.0	0	N/A	N/A
eggNOG-mapper	UHGV-1506938_51	1235802.C823_05263	215.0	0	N/A	N/A
Pfam	UHGV-1506938_51	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1506938_51	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1506938_51	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1506938_52	PF10651,TIGR04339	N/A	N/A	N/A	N/A
PHROG	UHGV-1506938_53	phrog_30034	93.4	3.3e-27	N/A	unknown function
UniRef90	UHGV-1506938_53	UniRef90_A0A3D1XGA4	209.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1506938_53	478749.BRYFOR_07638	74.7	0.0000000000000137	N/A	N/A
Pfam	UHGV-1506938_53	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1506938	Yes	35,797	54	82	1
UHGV-0043223	No	35,315	55	81	1
UHGV-1395426	No	35,315	55	81	1
UHGV-1470044	No	30,780	55	71	1