vOTU vOTU-025481

vOTU: vOTU-025481

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-025481
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00132 → vSUBFAM-00871 → vGENUS-00763 → vOTU-025481
Host lineage	Bacteria → Firmicutes
Host range breadth	Phylum
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1484323
Biosample ID	SAMEA2338636
Genome length (bp)	27,648 bps
CheckV completeness	64.98% (Medium-quality)
CDS count	55
CDS density	89.27%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes	Total connections	22	Host agreement	59.09
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 64.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1484323_1	phrog_156	68.5	6.3e-20	portal protein	head and packaging
eggNOG-mapper	UHGV-1484323_1	693746.OBV_01670	179.0	0	N/A	N/A
KOfam	UHGV-1484323_3	K21523	66.1	1.7e-20	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-1484323_3	phrog_2	95.4	9.4e-28	terminase large subunit	head and packaging
UniRef90	UHGV-1484323_3	UniRef90_UPI00189AAAC0	440.0	0	DNA packaging protein	N/A
eggNOG-mapper	UHGV-1484323_3	693746.OBV_23980	420.0	0	phage Terminase large subunit	N/A
COG	UHGV-1484323_3	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-1484323_3	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1484323_4	phrog_606	48.4	0.000000000000018	terminase small subunit	head and packaging
Pfam	UHGV-1484323_4	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
eggNOG-mapper	UHGV-1484323_7	97139.C824_00043	53.9	0.0000000505	N/A	N/A
PHROG	UHGV-1484323_8	phrog_7245	107.3	3.1e-32	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1484323_8	UniRef90_UPI001D06A358	132.0	2.21e-31	zincin-like metallopeptidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1484323_8	97139.C824_00155	137.0	8.65e-34	N/A	N/A
Pfam	UHGV-1484323_8	PF08401	N/A	N/A	N-terminal domain of anti-restriction factor ArdC	ArdcN
Pfam	UHGV-1484323_8	PF18818	N/A	N/A	Zincin-like metallopeptidase	MPTase-PolyVal
COG	UHGV-1484323_8	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
structural_annotation	UHGV-1484323_8	PF18818,PF08401,COG4227	N/A	N/A	N/A	N/A
COG	UHGV-1484323_9	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
eggNOG-mapper	UHGV-1484323_18	445970.ALIPUT_02528	52.0	0.00000065	N/A	N/A
PHROG	UHGV-1484323_28	phrog_918	102.4	1.9e-30	N/A	unknown function
UniRef90	UHGV-1484323_28	UniRef90_UPI001D0B68F4	121.0	7.98e-34	N/A	N/A
eggNOG-mapper	UHGV-1484323_28	411473.RUMCAL_00361	100.0	1.08e-26	N/A	N/A
Pfam	UHGV-1484323_28	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1484323_28	PF19791	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1484323_30	1123263.AUKY01000015_gene1588	53.1	0.0000000699	N/A	N/A
UniRef90	UHGV-1484323_31	UniRef90_A0A345BNS9	53.5	0.000000743	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1484323_31	428127.EUBDOL_01518	52.0	0.000000263	N/A	N/A
PHROG	UHGV-1484323_32	phrog_424	164.4	0	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1484323_32	UniRef90_UPI0004A0D626	255.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1484323_32	33876.JNXY01000004_gene1782	214.0	0	sulfate reduction	N/A
PADLOC	UHGV-1484323_32	SspD_00001	65.3	2.1e-18	SspD	SSP
Pfam	UHGV-1484323_32	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1484323_32	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1484323_32	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1484323_33	1121865.OMW_01950	58.9	0.000000000196	N/A	N/A
structural_annotation	UHGV-1484323_33	PF18300,NF033216,COG4568	N/A	N/A	N/A	N/A
UniRef90	UHGV-1484323_34	UniRef90_A0A6N7WVF3	58.2	0.0000000429	Restriction endonuclease subunit S	N/A
PHROG	UHGV-1484323_36	phrog_5968	123.3	1.4e-36	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1484323_36	UniRef90_A0A8I0ADW4	110.0	4.5e-25	Phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1484323_36	626523.GCWU000342_01039	139.0	3.29e-36	DnaD domain protein	N/A
Pfam	UHGV-1484323_36	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1484323_36	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1484323_36	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1484323_36	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-1484323_39	K03111	50.3	0.000000000000052	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1484323_39	phrog_44	57.3	3.6e-16	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1484323_39	UniRef90_A0A6G7Y1U6	58.2	0.0000000362	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1484323_39	406818.XBJ1_3380	56.2	0.0000000621	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1484323_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1484323_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1484323_39	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1484323_40	K01160	52.0	0.000000000000019	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1484323_40	phrog_1682	67.0	3e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1484323_40	UniRef90_F8J189	100.0	6.6e-25	Putative Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1484323_40	508419.F8J189_9CAUD	100.0	1.11e-25	magnesium ion binding	N/A
Pfam	UHGV-1484323_40	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-1484323_40	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1484323_41	phrog_1389	42.5	0.00000000001	N/A	unknown function
eggNOG-mapper	UHGV-1484323_41	1347392.CCEZ01000060_gene3269	57.8	0.00000000314	N/A	N/A
structural_annotation	UHGV-1484323_41	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-1484323_42	phrog_7566	72.0	6.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-1484323_42	508419.F8J187_9CAUD	64.3	0.00000000000338	N/A	N/A
PHROG	UHGV-1484323_43	phrog_298	79.4	1.5e-23	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1484323_43	UniRef90_A0A3D5XTJ3	118.0	8.72e-30	Cas_Cas4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1484323_43	508419.F8J184_9CAUD	95.9	9.36e-22	nuclease activity	N/A
Pfam	UHGV-1484323_43	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
structural_annotation	UHGV-1484323_43	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1484323_44	phrog_6244	79.6	4.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-1484323_44	1399942.U3PIX9_9CAUD	52.8	0.000000179	N/A	N/A
structural_annotation	UHGV-1484323_44	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1484323_45	phrog_155	74.1	2.2e-21	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1484323_45	UniRef90_UPI001E498420	114.0	3.16e-28	ERF family protein	N/A
eggNOG-mapper	UHGV-1484323_45	318464.IO99_00460	97.8	1.8e-22	ERF superfamily	N/A
Pfam	UHGV-1484323_45	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1484323_45	PF04404	N/A	N/A	N/A	N/A
Pfam	UHGV-1484323_47	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-1484323_48	phrog_3	45.2	0.0000000000036	transcriptional repressor	transcription regulation
UniRef90	UHGV-1484323_48	UniRef90_A0A374UNQ5	65.1	0.00000000000423	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1484323_48	1163671.JAGI01000002_gene3923	53.1	0.0000000253	N/A	N/A
Pfam	UHGV-1484323_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1484323_48	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1484323_49	K22300	66.7	4.7e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1484323_49	phrog_8	64.7	2e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1484323_49	UniRef90_A0A1G5GG78	63.9	0.0000000000579	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-1484323_49	1000569.HMPREF1040_0380	56.6	0.0000000379	Peptidase S24-like	N/A
PADLOC	UHGV-1484323_49	retron_type_VI_hth_cluster2_1	43.3	0.00000000001	N/A	Retron
Pfam	UHGV-1484323_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1484323_49	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-1484323_50	K14059	169.6	0	int; integrase	N/A
PHROG	UHGV-1484323_50	phrog_1	158.4	0	integrase	integration and excision
UniRef90	UHGV-1484323_50	UniRef90_UPI00189AE8E1	216.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1484323_50	290402.Cbei_1491	83.2	0.0000000000000111	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1484323_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1484323_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1484323_50	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1484323_52	K06823	92.5	4.8e-33	COL18A; collagen type XVIII alpha	N/A
PHROG	UHGV-1484323_52	phrog_819	79.3	0	tail protein	tail
eggNOG-mapper	UHGV-1484323_52	290402.Cbei_3387	79.0	0.0000000000000422	N/A	N/A
Pfam	UHGV-1484323_52	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-1484323_53	K16617	66.0	2.6e-19	COL13A; collagen type XIII alpha	N/A
PHROG	UHGV-1484323_53	phrog_819	67.3	1e-19	tail protein	tail
Pfam	UHGV-1484323_53	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1484323_54	PF16640,TIGR04488	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1484323_55	871968.DESME_08840	112.0	1.71e-22	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1484323	Yes	27,648	38	65	1
UHGV-0067576	No	27,648	38	65	1
UHGV-1483379	No	25,407	37	60	1
UHGV-1597176	No	18,087	37	43	1