vOTU vOTU-025706

vOTU: vOTU-025706

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-025706
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-04750 → vGENUS-08830 → vOTU-025706
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1531348
Biosample ID	N/A
Genome length (bp)	32,319 bps
CheckV completeness	53.70% (Medium-quality)
CDS count	45
CDS density	92.87%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	243	Host agreement	97.53
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	9	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 53.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1531348_1	K06400	279.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1531348_1	phrog_95	283.6	0	integrase	integration and excision
UniRef90	UHGV-1531348_1	UniRef90_UPI001D084942	657.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1531348_1	246199.CUS_6803	263.0	0	N/A	N/A
Pfam	UHGV-1531348_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1531348_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1531348_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1531348_1	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1531348_3	UniRef90_UPI001D05EDA5	73.9	5.75e-16	LuxR C-terminal-related transcriptional regulator	N/A
Pfam	UHGV-1531348_3	PF13542	N/A	N/A	Helix-turn-helix domain of transposase family ISL3	HTH_Tnp_ISL3
structural_annotation	UHGV-1531348_3	PF00196,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1531348_4	PF04936	N/A	N/A	N/A	N/A
PHROG	UHGV-1531348_5	phrog_9804	142.7	2.10055e-42	N/A	unknown function
UniRef90	UHGV-1531348_5	UniRef90_A0A1C5LKA4	180.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1531348_5	626523.GCWU000342_01038	124.0	2.55e-32	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1531348_5	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1531348_5	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1531348_6	phrog_5708	244.8	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1531348_6	UniRef90_UPI0018994D15	207.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-1531348_6	1415774.U728_867	170.0	0	DnaD domain protein	N/A
COG	UHGV-1531348_6	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1531348_6	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1531348_8	phrog_19106	325.1	0	N/A	unknown function
UniRef90	UHGV-1531348_8	UniRef90_R7BHG7	273.0	0	GIY-YIG domain-containing protein	N/A
eggNOG-mapper	UHGV-1531348_8	658655.HMPREF0988_00875	255.0	0	N/A	N/A
structural_annotation	UHGV-1531348_8	TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-1531348_11	K03111	114.6	1.4e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1531348_11	phrog_44	122.8	3e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1531348_11	UniRef90_R9KL32	193.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1531348_11	397290.C810_01495	193.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1531348_11	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1531348_11	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1531348_11	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1531348_11	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1531348_11	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1531348_13	PF02452,NF010262,COG2337	N/A	N/A	N/A	N/A
KOfam	UHGV-1531348_14	K00558	227.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1531348_14	phrog_116	264.3	0	DNA methyltransferase	other
UniRef90	UHGV-1531348_14	UniRef90_A0A1C5S2H5	976.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1531348_14	1235800.C819_02255	641.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1531348_14	MTase_II_00020	108.2	3.6e-35	Type II methyltransferase	RM
Pfam	UHGV-1531348_14	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1531348_14	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1531348_14	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1531348_16	phrog_4433	218.2	0	N/A	unknown function
UniRef90	UHGV-1531348_16	UniRef90_A0A1C6I166	153.0	1.15e-40	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-1531348_16	665950.HMPREF1025_01373	163.0	0	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1531348_16	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1531348_16	PF12120,NF000318	N/A	N/A	N/A	N/A
KOfam	UHGV-1531348_17	K06167	55.4	6.3e-16	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1531348_17	phrog_392	169.5	0	metal-dependent hydrolase	other
UniRef90	UHGV-1531348_17	UniRef90_UPI001BC4CEB0	309.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1531348_17	1443122.Z958_05735	162.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-1531348_17	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
dbAPIS	UHGV-1531348_17	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-1531348_17	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1531348_17	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-1531348_18	K06940	53.6	0.0000000000000048	N/A	N/A
PHROG	UHGV-1531348_18	phrog_32498	206.3	0	N/A	unknown function
UniRef90	UHGV-1531348_18	UniRef90_A0A3R6ASD4	226.0	0	YkgJ family cysteine cluster protein	N/A
eggNOG-mapper	UHGV-1531348_18	397290.C810_01479	147.0	4.48416e-44	Putative zinc- or iron-chelating domain	N/A
Pfam	UHGV-1531348_18	PF03692	N/A	N/A	Putative zinc- or iron-chelating domain	CxxCxxCC
structural_annotation	UHGV-1531348_18	PF03692	N/A	N/A	N/A	N/A
PHROG	UHGV-1531348_20	phrog_25456	67.7	7.8e-21	N/A	unknown function
PHROG	UHGV-1531348_21	phrog_561	176.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1531348_21	UniRef90_UPI001A8D427A	196.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1531348_21	537013.CLOSTMETH_01715	202.0	0	N/A	N/A
Pfam	UHGV-1531348_21	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-1531348_21	NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1531348_22	K19171	51.3	0.0000000000000011	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1531348_22	phrog_77	144.1	1.00053e-42	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1531348_22	UniRef90_A0A412RQV0	452.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1531348_22	397290.C810_01461	410.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1531348_22	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1531348_22	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
UniRef90	UHGV-1531348_23	UniRef90_R6Q349	82.0	0.00000000000000135	Single-strand binding protein/Primosomal replication protein n	N/A
eggNOG-mapper	UHGV-1531348_23	1414720.CBYM010000067_gene3415	70.5	0.00000000000409	PFAM single-strand binding protein	N/A
Pfam	UHGV-1531348_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1531348_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1531348_23	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1531348_26	phrog_19890	88.6	6.9e-26	N/A	unknown function
UniRef90	UHGV-1531348_26	UniRef90_A0A352SFF8	175.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1531348_26	1410650.JHWL01000003_gene2854	133.0	4.53e-37	lytic transglycosylase activity	N/A
Pfam	UHGV-1531348_26	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-1531348_26	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
PHROG	UHGV-1531348_27	phrog_2316	87.0	3.7e-26	N/A	unknown function
UniRef90	UHGV-1531348_27	UniRef90_A0A8I0AF49	124.0	1.24e-31	N/A	N/A
eggNOG-mapper	UHGV-1531348_27	1280698.AUJS01000007_gene1022	116.0	2.63e-29	N/A	N/A
Pfam	UHGV-1531348_27	PF16475	N/A	N/A	N/A	DUF5052
structural_annotation	UHGV-1531348_27	PF16475	N/A	N/A	N/A	N/A
PHROG	UHGV-1531348_28	phrog_14105	219.5	0	N/A	unknown function
UniRef90	UHGV-1531348_28	UniRef90_U2BMS0	335.0	0	Pentapeptide repeat protein	N/A
eggNOG-mapper	UHGV-1531348_28	742740.HMPREF9474_02379	225.0	0	dextransucrase activity	N/A
Pfam	UHGV-1531348_28	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-1531348_28	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
UniRef90	UHGV-1531348_30	UniRef90_UPI000DA61890	54.3	0.0000000187	antA/AntB antirepressor family protein	N/A
eggNOG-mapper	UHGV-1531348_30	552396.HMPREF0863_00756	63.2	0.0000000000462	P22_AR N-terminal domain	N/A
COG	UHGV-1531348_30	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1531348_31	PF12729	N/A	N/A	N/A	N/A
UniRef90	UHGV-1531348_33	UniRef90_UPI001D0090A6	111.0	1.33e-30	N/A	N/A
eggNOG-mapper	UHGV-1531348_33	171693.BN988_01635	99.8	8.37e-27	N/A	N/A
Pfam	UHGV-1531348_33	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1531348_33	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1531348_33	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1531348_34	phrog_2967	40.3	0.000000000053	transcriptional regulator	transcription regulation
UniRef90	UHGV-1531348_34	UniRef90_UPI001D029144	178.0	0	transcriptional regulator	N/A
eggNOG-mapper	UHGV-1531348_34	457412.RSAG_00795	120.0	6.75e-33	sequence-specific DNA binding	N/A
COG	UHGV-1531348_34	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1531348_34	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1531348_35	K01448	111.5	8.7e-33	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1531348_35	phrog_12727	229.4	0	endolysin	lysis
UniRef90	UHGV-1531348_35	UniRef90_A0A1Y4IK94	238.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-1531348_35	411490.ANACAC_00597	179.0	0	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-1531348_35	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-1531348_35	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1531348_35	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1531348_35	PF01832,PF08230,NF038016,TIGR02594,COG1705,COG4322	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1531348_36	742735.HMPREF9467_00753	73.6	0.0000000000000037	N/A	N/A
structural_annotation	UHGV-1531348_36	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1531348_37	phrog_20274	152.8	1.4013e-45	N/A	unknown function
UniRef90	UHGV-1531348_37	UniRef90_A0A1C5ZRD7	225.0	0	Predicted membrane protein	N/A
eggNOG-mapper	UHGV-1531348_37	1235799.C818_04238	187.0	0	Putative ABC-transporter type IV	N/A
Pfam	UHGV-1531348_37	PF06541	N/A	N/A	Putative ABC-transporter type IV	ABC_trans_CmpB
COG	UHGV-1531348_37	COG4905	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1531348_37	PF06541,COG4905	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1531348_39	397291.C804_01137	182.0	0	N/A	N/A
Pfam	UHGV-1531348_39	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
PHROG	UHGV-1531348_40	phrog_18725	57.0	3.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-1531348_40	585501.HMPREF6123_0822	86.7	7.35e-20	N/A	N/A
PHROG	UHGV-1531348_41	phrog_13879	292.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1531348_41	742740.HMPREF9474_03516	560.0	0	N/A	N/A
structural_annotation	UHGV-1531348_41	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1531348_42	phrog_1194	53.0	0.0000000000000056	N/A	unknown function
eggNOG-mapper	UHGV-1531348_42	1298920.KI911353_gene4840	79.0	3.86e-17	N/A	N/A
structural_annotation	UHGV-1531348_42	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-1531348_43	K10421	52.2	4.8e-16	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-1531348_43	phrog_1535	273.6	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1531348_43	1158612.I580_01921	116.0	3.82e-23	SLT domain	N/A
COG	UHGV-1531348_43	COG1511	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1531348	Yes	32,319	42	54	1
UHGV-0052817	No	30,528	42	51	1
UHGV-1862760	No	14,155	42	24	1