vOTU vOTU-026024

vOTU: vOTU-026024

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-026024
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435555
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00213 → vOTU-026024
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0080018
Biosample ID	N/A
Genome length (bp)	28,893 bps
CheckV completeness	67.56% (Medium-quality)
CDS count	52
CDS density	93.53%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	96	Host agreement	91.67
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435555	Total connections	10	Host agreement	90

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 67.56)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0080018_1	phrog_1129	58.9	7.3e-17	holin	lysis
UniRef90	UHGV-0080018_1	UniRef90_A0A8D9PDD4	155.0	0	Holin	N/A
eggNOG-mapper	UHGV-0080018_1	1007096.BAGW01000035_gene1305	104.0	2.62e-28	N/A	N/A
Pfam	UHGV-0080018_1	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0080018_1	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0080018_2	phrog_4105	103.7	1.1e-30	N/A	unknown function
UniRef90	UHGV-0080018_2	UniRef90_A0A8D9UHA9	206.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-0080018_2	411460.RUMTOR_01326	140.0	3.32949e-42	N/A	N/A
PHROG	UHGV-0080018_4	phrog_18593	116.0	3.2e-34	N/A	unknown function
UniRef90	UHGV-0080018_4	UniRef90_A0A2Y9CAD1	158.0	0	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0080018_4	411460.RUMTOR_02099	136.0	6.36e-38	N/A	N/A
Pfam	UHGV-0080018_4	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0080018_4	PF14600	N/A	N/A	N/A	N/A
Pfam	UHGV-0080018_6	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0080018_6	PF21722	N/A	N/A	N/A	N/A
Pfam	UHGV-0080018_7	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0080018_7	PF21722	N/A	N/A	N/A	N/A
PHROG	UHGV-0080018_8	phrog_3279	41.8	0.000000000018	tail fiber protein	tail
eggNOG-mapper	UHGV-0080018_8	1235793.C809_03302	66.6	0.0000000149	N/A	N/A
PHROG	UHGV-0080018_9	phrog_15239	85.9	2.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0080018_9	1449126.JQKL01000003_gene1694	51.2	0.00000256	N/A	N/A
PHROG	UHGV-0080018_10	phrog_1357	259.4	0	major head protein	head and packaging
UniRef90	UHGV-0080018_10	UniRef90_A0A8D9UH64	800.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0080018_10	1449126.JQKL01000003_gene1695	453.0	0	N/A	N/A
Pfam	UHGV-0080018_10	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0080018_10	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0080018_10	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0080018_11	phrog_13908	306.7	0	N/A	unknown function
UniRef90	UHGV-0080018_11	UniRef90_A0A844DRV7	119.0	1.36e-26	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0080018_11	1410650.JHWL01000003_gene2831	119.0	2.02e-28	N/A	N/A
UniRef90	UHGV-0080018_12	UniRef90_A0A8D9PDR6	191.0	0	YsxB-like protein	N/A
Pfam	UHGV-0080018_12	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0080018_12	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0080018_13	phrog_156	328.2	0	portal protein	head and packaging
UniRef90	UHGV-0080018_13	UniRef90_A0A8D9UH10	1250.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0080018_13	748224.HMPREF9436_01396	539.0	0	N/A	N/A
structural_annotation	UHGV-0080018_13	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0080018_14	K06909	117.8	1.2e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0080018_14	phrog_979	194.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0080018_14	UniRef90_A0A8D9PDR5	1017.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0080018_14	1321782.HMPREF1986_00343	617.0	0	N/A	N/A
Pfam	UHGV-0080018_14	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0080018_14	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0080018_14	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080018_15	UniRef90_A0A8D9PDT2	247.0	0	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-0080018_15	1226322.HMPREF1545_00042	138.0	3.4e-40	N/A	N/A
structural_annotation	UHGV-0080018_15	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-0080018_16	K22299	49.1	0.00000000000014	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0080018_16	phrog_8	64.0	3.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0080018_16	UniRef90_A0A8D9PDC4	151.0	0	Repressor protein	N/A
eggNOG-mapper	UHGV-0080018_16	1226322.HMPREF1545_00039	77.8	4.83e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0080018_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0080018_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0080018_16	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080018_19	UniRef90_A0A8D9PDT5	247.0	0	Hydrogenase/urease nickel incorporation protein	N/A
UniRef90	UHGV-0080018_21	UniRef90_A0A8D9PDK2	210.0	0	Zinc-ribbon containing domain	N/A
UniRef90	UHGV-0080018_22	UniRef90_A0A8D9PDQ6	154.0	0	Restriction alleviation protein	N/A
Pfam	UHGV-0080018_22	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0080018_22	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0080018_23	phrog_3136	128.5	2.3e-38	N/A	unknown function
UniRef90	UHGV-0080018_23	UniRef90_UPI001CBCD733	129.0	1.51e-34	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0080018_23	642492.Clole_1416	68.9	0.00000000000108	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0080018_23	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0080018_23	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080018_25	UniRef90_A0A8D9PDK1	209.0	0	Anti-repressor	N/A
KOfam	UHGV-0080018_26	K00558	41.1	0.000000000014	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0080018_26	phrog_757	109.1	3.5e-32	DNA methyltransferase	other
UniRef90	UHGV-0080018_26	UniRef90_A0A8D9PDD1	410.0	0	DNA (Cytosine 5) methyltransferase	N/A
eggNOG-mapper	UHGV-0080018_26	622312.ROSEINA2194_01264	342.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-0080018_26	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0080018_26	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0080018_26	PF00145,MF_00341,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0080018_28	K00571	92.7	2e-27	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0080018_28	phrog_67	71.5	3.8e-29	DNA methyltransferase	other
UniRef90	UHGV-0080018_28	UniRef90_A0A7X8MLD3	198.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0080018_28	1125725.HMPREF1325_1312	177.0	0	N-4 methylation of cytosine	N/A
PADLOC	UHGV-0080018_28	MTase_II_00172	100.7	2.1e-29	Type II methyltransferase	RM
Pfam	UHGV-0080018_28	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0080018_28	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0080018_28	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0080018_29	phrog_190	111.0	1.1e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0080018_29	UniRef90_A0A8D9PDD6	271.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0080018_29	862517.HMPREF9225_1657	83.6	7.19e-19	N/A	N/A
Pfam	UHGV-0080018_29	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0080018_29	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0080018_31	phrog_15768	109.1	7.3e-34	N/A	unknown function
UniRef90	UHGV-0080018_31	UniRef90_A0A8D9PDU3	300.0	0	N/A	N/A
eggNOG-mapper	UHGV-0080018_31	203119.Cthe_2466	84.3	1.94e-16	N/A	N/A
Pfam	UHGV-0080018_31	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0080018_31	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0080018_33	K03111	145.7	5.10073e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0080018_33	phrog_44	141.9	3.99931e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0080018_33	UniRef90_R6GTK3	194.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0080018_33	693746.OBV_19910	193.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0080018_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0080018_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0080018_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0080018_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0080018_33	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0080018_34	phrog_7566	95.5	3.4e-28	N/A	unknown function
UniRef90	UHGV-0080018_34	UniRef90_A0A8D9UHC0	190.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0080018_34	693746.OBV_24070	123.0	2.71e-35	N/A	N/A
PHROG	UHGV-0080018_36	phrog_72	57.3	1.4e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0080018_36	UniRef90_A0A8D9PDS2	340.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0080018_36	445972.ANACOL_01825	133.0	5.02e-37	N/A	N/A
structural_annotation	UHGV-0080018_36	PF05772	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080018_37	UniRef90_B0PAM4	155.0	1.82169e-44	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-0080018_37	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080018_38	UniRef90_A0A845QLQ8	189.0	0	N/A	N/A
eggNOG-mapper	UHGV-0080018_38	33035.JPJF01000135_gene5082	115.0	2.03e-29	N/A	N/A
Pfam	UHGV-0080018_38	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0080018_38	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080018_40	UniRef90_A0A8D9UH91	317.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0080018_40	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0080018_40	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0080018_42	phrog_22529	50.2	0.000000000000032	N/A	unknown function
UniRef90	UHGV-0080018_42	UniRef90_A0A8D9UHA1	314.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-0080018_42	742733.HMPREF9469_00853	63.9	0.0000000002	3D domain	N/A
Pfam	UHGV-0080018_42	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0080018_42	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0080018_42	COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-0080018_45	phrog_8	44.1	0.0000000000046	transcriptional regulator	transcription regulation
UniRef90	UHGV-0080018_45	UniRef90_UPI000831CB3C	50.8	0.00000155	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0080018_45	394503.Ccel_3076	59.7	0.0000000000976	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0080018_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0080018_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0080018_45	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0080018_46	55511.Q4ZE02_9CAUD	50.4	0.00000879	sequence-specific DNA binding	N/A
Pfam	UHGV-0080018_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0080018_46	PF01381,MF_00535,NF041951,TIGR02607,COG3655,COG3093	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080018_50	UniRef90_A0A8D9UHA6	387.0	0	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0080018_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0080018_50	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0080018_50	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0080018_51	K14059	212.5	0	int; integrase	N/A
PHROG	UHGV-0080018_51	phrog_1	183.1	0	integrase	integration and excision
UniRef90	UHGV-0080018_51	UniRef90_U2QJL8	449.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0080018_51	1226322.HMPREF1545_00144	449.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0080018_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0080018_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0080018_51	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0080018_52	K00974	331.7	0	cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]	N/A
PHROG	UHGV-0080018_52	phrog_2244	235.2	0	tRNA nucleotidyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0080018_52	UniRef90_R6CYX9	871.0	0	tRNA nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-0080018_52	1007096.BAGW01000023_gene179	509.0	0	Probable RNA and SrmB- binding site of polymerase A	N/A
Pfam	UHGV-0080018_52	PF01743	N/A	N/A	Poly A polymerase head domain	PolyA_pol
Pfam	UHGV-0080018_52	PF12627	N/A	N/A	Probable RNA and SrmB- binding site of polymerase A	PolyA_pol_RNAbd
Pfam	UHGV-0080018_52	PF13735	N/A	N/A	tRNA nucleotidyltransferase domain 2 putative	tRNA_NucTran2_2
COG	UHGV-0080018_52	COG0617	N/A	N/A	tRNA nucleotidyltransferase/poly(A) polymerase	N/A
structural_annotation	UHGV-0080018_52	PF01743,PF13735,PF12627,MF_01263,TIGR02692,COG0617	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0080018	Yes	28,893	57	68	1
UHGV-1689337	No	14,491	54	34	1
UHGV-1622304	No	12,408	60	29	1