vOTU vOTU-026114

vOTU: vOTU-026114

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-026114
Number of genomes	3
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00513 → vGENUS-00603 → vOTU-026114
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → Flemingibacterium → Flemingibacterium sp900546315
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1864479
Biosample ID	SAMN18819055
Genome length (bp)	27,763 bps
CheckV completeness	60.26% (Medium-quality)
CDS count	60
CDS density	90.48%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → Flemingibacterium → Flemingibacterium sp900546315	Total connections	2	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 60.26)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1864479_2	UniRef90_UPI001D07B715	94.0	5.67e-20	DNA-packaging protein	N/A
structural_annotation	UHGV-1864479_2	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1864479_3	phrog_8841	452.3	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1864479_3	UniRef90_A0A1C6FPW9	446.0	0	Superfamily II helicase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-1864479_3	742738.HMPREF9460_02495	379.0	0	N/A	N/A
Pfam	UHGV-1864479_3	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1864479_3	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1864479_3	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1864479_3	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-1864479_4	K02316	81.9	1.1e-23	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1864479_4	phrog_11992	88.7	8.9e-26	N/A	unknown function
UniRef90	UHGV-1864479_4	UniRef90_D4JZ02	91.3	3.52e-19	DNA primase (Bacterial type)	N/A
eggNOG-mapper	UHGV-1864479_4	718252.FP2_18240	91.3	5.9e-20	CHC2 zinc finger	N/A
PADLOC	UHGV-1864479_4	drt-cluster192	61.2	2.7e-17	DRT	DRT
Pfam	UHGV-1864479_4	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1864479_4	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1864479_4	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-1864479_6	phrog_3490	123.4	1.8e-36	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1864479_6	UniRef90_A0A1C6FNL5	161.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1864479_6	357809.Cphy_2986	142.0	4.96004e-41	N/A	N/A
Pfam	UHGV-1864479_6	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1864479_6	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-1864479_7	K03111	108.0	1.7e-31	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1864479_7	phrog_44	111.7	9.1e-33	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1864479_7	UniRef90_A0A3D3U8Y9	129.0	7.36e-36	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1864479_7	537013.CLOSTMETH_00062	94.4	1.63e-22	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1864479_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1864479_7	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1864479_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1864479_7	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1864479_7	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1864479_8	phrog_561	148.3	5.1848e-44	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1864479_8	UniRef90_UPI001EE8E2AA	216.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1864479_8	887325.HMPREF0381_0098	189.0	0	N/A	N/A
Pfam	UHGV-1864479_8	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-1864479_8	PF03837,TIGR01913	N/A	N/A	N/A	N/A
KOfam	UHGV-1864479_10	K10906	83.4	3.2e-28	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-1864479_10	phrog_412	226.0	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1864479_10	UniRef90_A0A1C6GFL6	242.0	0	Exodeoxyribonuclease 8	N/A
eggNOG-mapper	UHGV-1864479_10	1454004.AW11_02382	192.0	0	N/A	N/A
Pfam	UHGV-1864479_10	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1864479_10	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1864479_10	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1864479_12	phrog_774	54.5	0.0000000000000027	N/A	unknown function
eggNOG-mapper	UHGV-1864479_12	397290.C810_05225	66.6	0.000000000000384	N/A	N/A
structural_annotation	UHGV-1864479_14	PF15781	N/A	N/A	N/A	N/A
PHROG	UHGV-1864479_18	phrog_1374	47.8	0.0000000000002	N/A	unknown function
eggNOG-mapper	UHGV-1864479_18	33876.JNXY01000004_gene1766	55.5	0.00000000158	Transmembrane Fragile-X-F protein	N/A
structural_annotation	UHGV-1864479_19	COG3460	N/A	N/A	N/A	N/A
PHROG	UHGV-1864479_24	phrog_799	191.8	0	DNA methyltransferase	other
UniRef90	UHGV-1864479_24	UniRef90_A0A373KMH1	250.0	0	NAD(P)-dependent oxidoreductase	N/A
eggNOG-mapper	UHGV-1864479_24	1231377.C426_1976	229.0	0	DNA restriction-modification system	N/A
COG	UHGV-1864479_24	COG0827	N/A	N/A	Adenine-specific DNA N6-methylase	N/A
structural_annotation	UHGV-1864479_24	PF19587,MF_01872,NF011489,COG0286	N/A	N/A	N/A	N/A
UniRef90	UHGV-1864479_25	UniRef90_A0A3A9ES11	58.9	0.000000000234	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1864479_25	657322.FPR_26610	69.7	0.000000000000234	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1864479_25	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1864479_26	phrog_474	120.6	1.8e-35	phosphofructokinase	other
eggNOG-mapper	UHGV-1864479_26	428125.CLOLEP_01367	105.0	2.43e-27	N/A	N/A
Pfam	UHGV-1864479_26	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-1864479_26	PF19905	N/A	N/A	N/A	N/A
dbAPIS	UHGV-1864479_28	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
COG	UHGV-1864479_28	COG5352	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1864479_28	PF01710,NF040595,COG3415	N/A	N/A	N/A	N/A
Pfam	UHGV-1864479_29	PF04255	N/A	N/A	N/A	DUF433
Pfam	UHGV-1864479_29	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-1864479_34	PF21291,NF041951,COG1513	N/A	N/A	N/A	N/A
KOfam	UHGV-1864479_38	K22300	42.2	0.000000000017	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1864479_38	phrog_8	42.0	0.000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-1864479_38	UniRef90_UPI0014396AC6	59.7	0.00000000431	helix-turn-helix domain-containing protein	N/A
COG	UHGV-1864479_38	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-1864479_38	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-1864479_41	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1864479_41	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1864479_42	K14059	185.0	0	int; integrase	N/A
PHROG	UHGV-1864479_42	phrog_1	165.5	0	integrase	integration and excision
UniRef90	UHGV-1864479_42	UniRef90_A0A328U998	194.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1864479_42	1226322.HMPREF1545_00144	172.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1864479_42	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1864479_42	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1864479_42	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1864479_42	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1864479_43	PF16734,PF01402	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1864479_46	PF02255,TIGR00823,COG1447	N/A	N/A	N/A	N/A
UniRef90	UHGV-1864479_49	UniRef90_A0A843IZ65	68.2	0.000000000000136	Sigma70_r4 domain-containing protein	N/A
structural_annotation	UHGV-1864479_49	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1864479_50	phrog_6918	58.7	8.9e-17	holin	lysis
UniRef90	UHGV-1864479_50	UniRef90_G9YP36	53.5	0.000000778	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-1864479_50	1226322.HMPREF1545_03575	56.6	0.0000000106	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1864479_50	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1864479_50	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-1864479_51	K07273	163.2	0	acm; lysozyme	N/A
PHROG	UHGV-1864479_51	phrog_291	141.1	9.99967e-42	endolysin	lysis
UniRef90	UHGV-1864479_51	UniRef90_A0A1C6ACC3	157.0	1.14066e-42	Lysozyme M1	N/A
eggNOG-mapper	UHGV-1864479_51	999411.HMPREF1092_03301	132.0	4.32e-34	family 25	N/A
Pfam	UHGV-1864479_51	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1864479_51	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1864479_51	PF01183,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1864479_53	742733.HMPREF9469_05009	53.1	0.00000392	N/A	N/A
PHROG	UHGV-1864479_54	phrog_13589	166.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1864479_54	428125.CLOLEP_01434	211.0	0	N/A	N/A
PHROG	UHGV-1864479_56	phrog_15594	91.4	6.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-1864479_56	1118055.CAGU01000013_gene763	65.9	0.00000000000108	N/A	N/A
structural_annotation	UHGV-1864479_56	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-1864479_57	phrog_4105	72.8	4.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-1864479_57	397288.C806_00056	85.9	2.18e-20	N/A	N/A
PHROG	UHGV-1864479_58	phrog_18593	130.6	1.1e-38	N/A	unknown function
UniRef90	UHGV-1864479_58	UniRef90_A0A2Y9CAD1	166.0	0	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1864479_58	411460.RUMTOR_02099	136.0	6.61e-38	N/A	N/A
Pfam	UHGV-1864479_58	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1864479_58	PF14600	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1864479	Yes	27,763	55	60	1
UHGV-1599957	No	18,044	57	39	1
UHGV-1601465	No	16,740	57	36	1